How does water and salt stress affect the germination and initial growth of Brazilian soya bean cultivars?

The effects of water and salt stress on rate of germination and seedling growth were investigated under laboratory conditions in 46 soya bean genotypes from Central-West region of Brazil to verify how these stresses may limit crop establishment during the initial growth stage and also to identify the most tolerant genotypes to drought and salinity. Mild water and salt stresses were imposed by seed exposure to –0.20 MPa iso-osmotic solutions with polyethylene glycol—PEG 6000 (119.57 g/L) or NaCl (2.357 g/L) for 12 days at 25°C. The germination percentage, seedling length and seedling dry matter were measured, and then, salt or drought tolerance indexes were calculated. The “NS 5909 RG,” “NS 7000 IPRO,” “NS 7338IPRO,” “FPS Solimões RR,” “NS 5151 IPRO,” “SYN 13610 IPRO,” “LG 60177 IPRO,” “NS 6909 IPRO” and “BMX Desafio RR” were identified as the most drought-tolerant genotypes, whereas under salinity conditions, the genotypes “5D 615 RR,” “BMX Desafio RR,” “5D 6215 IPRO” and “BMX Ponta IPRO” were identified as tolerant. The “BMX Desafio RR” is the genotype most adapted to both stress conditions and, therefore, should be used under conditions of water shortage and excess salt in the soil at sowing time.     

The scale of landscape effect on seed dispersal depends on both response variables and landscape predictor

Landscape Ecology - Landscape structure can affect seed dispersal, but the spatial scale at which such effect is maximized (scale of effect, SoE) is unknown. We assessed patterns and predictors of...     

Rapid sequence modification in the highly polymorphic region (HPR) of the hemagglutinin gene of the infectious salmon anaemia virus (ISAV) suggests intra-segmental template switching recombination

The ISAV has a genome composed of eight segments of (–)ssRNA, segment 6 codes for the hemagglutinin–esterase protein, and has the most variable region of the genome, the highly polymorphic region (HPR), which is unique among orthomyxoviruses. The HPR has been associated with virulence, infectivity and pathogenicity. The full length of the HPR is called HPR0 and the strain with this HPR is avirulent, in contrast to strains with deleted HPR that are virulent to varying degrees. The molecular mechanism that gives rise to the different HPRs remains unclear. Here, we studied in vitro the evolution of reassortant recombinant ISAV (rISAV) in Atlantic salmon head kidney (ASK) cells. To this end, we rescued and cultivated a set of rISAV with different segment 6-HPR genotypes using a reverse genetics system and then sequencing HPR regions of the viruses. Our results show rapid multiple recombination events in ISAV, with sequence insertions and deletions in the HPR, indicating a dynamic process. Inserted sequences can be found in four segments of the ISAV genome (segments 1, 5, 6, and 8). The results suggest intra-segmental heterologous recombination, probably by class I and class II template switching, similar to the proposed segment 5 recombination mechanism.     

Detection of Ecballium elaterium in hedgerow olive orchards using a low-cost uncrewed aerial vehicle and open-source algorithms

BACKGROUND

Ecballium elaterium (common name: squirting cucumber) is an emerging weed problem in hedgerow or superintensive olive groves under no tillage. It colonizes the inter-row area infesting the natural or sown cover crops, and is considered a hard-to-control weed. Research in other woody crops has shown E. elaterium has a patchy distribution, which makes this weed susceptible to design a site-specific control strategy only addressed to E. elaterium patches. Therefore, the aim of this work was to develop a methodology based on the analysis of imagery acquired with an uncrewed aerial vehicle (UAV) to detect and map E. elaterium infestations in hedgerow olive orchards.

RESULTS

The study was conducted in two superintensive olive orchards, and the images were taken using a UAV equipped with an RGB sensor. Flights were conducted on two dates: in May, when there were various weeds infesting the orchard, and in September, when E. elaterium was the only infesting weed. UAV-orthomosaics in the first scenario were classified using random forest models, and the orthomosaics from September with E. elaterium as the only weed, were analyzed using an unsupervised algorithm. In both cases, the overall accuracies were over 0.85, and the producer's accuracies for E. elaterium ranged between 0.74 and 1.00.

CONCLUSION

These results allow the design of a site-specific and efficient herbicide control protocol which would represent a step forward in sustainable weed management. The development of these algorithms in free and open-source software fosters their application in small and medium farms. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

The impact of foliar fertilizers on growth and biochemical responses of Thymus vulgaris to salinity stress

Salinity reduces plant biomass and may lead to death when severe. To cope with the negative effects of this stress, plant species present specific physiological or biochemical responses. In this work, we hypothesized that spraying salt-stressed thyme leaves with K⁺ and Ca²⁺ could mitigate the negative effects of salinity on plant growth and metabolism. To test this hypothesis, we grew thyme plants under salinity stress for two and four weeks before applying foliar sprays. Also, to test the effect of stress relief, treated plants were allowed two weeks of recovery after four weeks of salt stress. In general, after two and four weeks of salinity stress, the leaf fresh weight of thyme plants was reduced by 31 and 43%, respectively. Salinity also decreased the relative water content, water, and osmotic potentials and led to ion imbalances and nutrient deficiencies. Salinity altered concentration of some essential oils, but leaf antioxidant contents remained fairly stable, except for a significant increase for plants under NaCl?+?KCl two weeks after treatment. Our results indicated that stressed plants accumulated significantly more soluble sugars and amino acids in comparison with the control. Foliar sprays with KCl and CaCl₂ reversed the negative effects of salinity on plant biomass and induced the accumulations of compatible solutes. Moreover, concentrations of some essential oils and gallic acid increased in sprayed plants, but these effects were dependent on the type and duration of the treatment. Overall, spraying leaves with K⁺ and Ca²⁺ was able to mitigate salinity stress in Thymus vulgaris even during the recovery period.     

Multilocus sequence typing detects new Piscirickettsia salmonis hybrid genogroup in Chilean fish farms: Evidence for genetic diversity and population structure

Piscirickettsia salmonisis the causative bacterial pathogen of piscirickettsiosis, a salmonid disease that causes notable mortalities in the worldwide aquaculture industry. Published research describes the phenotypic traits, virulence factors, pathogenicity and antibiotic‐resistance potential for various P. salmonisstrains. However, evolutionary and genetic information is scarce for P. salmonis. The present study used multilocus sequence typing (MLST) to gain insight into the population structure and evolution of P. salmonis. Forty‐two Chilean P. salmonisisolates, as well as the type strain LF‐89^T, were recovered from diseased Salmo salar, Oncorhynchus kisutchand Oncorhynchus mykissfrom two Chilean Regions. MLST assessed the loci sequences of dnaK, efp, fumC, glyA, murG, rpoD and trpB. Bioinformatics analyses established the genetic diversity among P. salmonis isolates (H = 0.5810). A total of 23 sequence types (ST) were identified, 53.48% of which were represented by ST1, ST5 and ST2. Population structure analysis through polymorphism patterns showed few polymorphic sites (218 nucleotides from 4,010 bp), while dN/dS ratio analysis indicated purifying selection for dnaK, epf, fumC, murG, and rpoD but neutral selection for the trpB loci. The standardized index of association indicated strong linkage disequilibrium, suggesting clonal population structure. However, recombination events were detected in a group of seven isolates. Findings included genogroups homologous to the LF‐89^T and EM‐90 strains, as well as a seven‐isolate hybrid genogroup recovered from both assessed regions (three O. mykiss and four S. salar isolates). The presented MLST scheme has comparative potential, with promising applications in studying distinct P. salmonis isolates (e.g., from different hosts, farms, geographical areas) and in understanding the epidemiology of this pathogen.     

Effects of anthropogenic noise as a source of acoustic stress in wild populations of Hippocampus guttulatus in the Ria Formosa,south Portugal

1. This study evaluated the effects of underwater noise as a source of acoustic stress in the wild populations of Hippocampus guttulatus in the Ria Formosa, south Portugal. Two different scenarios of underwater noise were tested: transient motor boat sound (63.4–127.6 dB) and constant sound produced by the motor of the boat directly above the animals (up to 137.1 dB).
2. Observations were obtained in the wild between 4 and 10 m depth throughout a 3 min period, using a video camera and a hydrophone set, and compared with a control sample.
3. A significant increase (P < 0.05) in the respiratory rate was observed in 87% of the observed fish. Opercular movements per minute (OMPM) increased from 35.7 ± 10 (control sample) to 41.2 ± 15.5 after the first minute, to 45.5 ± 13.3 after the second (both under transient sound) and to 49.7 ± 12.5 after the third (under constant sound exposure). Differences in means between the control fish and fish observed during the second (P < 0.01) and third minute of observation (P < 0.0001) were significant. Concordantly, a significant increase (P < 0.05) in the OMPM of fish observed in the first minute and the third minute was noted. In addition to the OMPM increase, 37.5% of the animals abandoned the observation location presumably in an attempt to avoid the negative sound stimuli.
4. The noise caused by boat traffic generated an immediate physiological response, expressed as an increase in OMPM, and a behavioural response resulting in site abandonment, which together can be considered as a negative impact on the seahorse populations. This work contributes to an increasing number of studies that have shown that boat traffic can induce ecological and environmental consequences to aquatic species. Future research should evaluate how navigation exclusion areas could have a positive impact on the seahorse populations inhabiting shallow coastal areas.

     

Impact of Caligus treatments on unit costs of heterogeneous salmon farms in Chile

We measure the impact that sanitary treatments that control ectoparasite Caligus rogercresseyi abundance have on unit production costs of Salmo salar farms in Chile. We follow complete production cycles for a sample of farms between 2009 and 2015. We estimate a simultaneous salmon biomass growth and Caligus abundance model. The statistical analysis determines the effect of antiparasitic treatments, location of farms, environmental conditions and Caligus abundance on the salmon growth profile. Using outside cost information, we simulate how unit production costs vary by treatment and farm characteristics. Our results suggest that unit production costs increase on average by $1.4?US/kg with Caligus and treatments. Treatment costs are compensated by higher harvesting levels, and unit production costs are invariant to the situation without treatment. All estimated effects differ depending on farm’s environmental and spatial conditions, suggesting that the design of cost-effective intervention calls for discriminatory regulation under heterogeneous conditions.