Towards sustainable farming systems: Effectiveness and deficiency of the French procedure of sustainable agriculture

There is a widespread consensus about the importance of sustainable agriculture. In France, the Farming Orientation Law of July 1999 has set down a precise procedure for the implementation of sustainable agriculture: the contrat territorial d’exploitation – or territorial farm contract (TFC). This paper aims to analyse the TFC effectiveness. An analysis has been made of the TFCs signed in the Midi-Pyrenees Region in south-western France, using statistical analysis and qualitative surveys of a sample of farms. The results show that the most valuable effects have been mainly economic. Effects regarding social and environmental aspects were very limited. But from the point of view of an integrated approach, indirect effects of TFCs can be observed on social and environmental aspects. These results are explained, on the one hand, by farmers’ motivations guided by economic objectives, and on the other hand, by the dominance of professional farming organisations in the implementation of TFC’s procedure. Given these results, two ways of improving the elaboration procedure for TFCs are proposed. Firstly, technical improvements can be made to the diagnostic assessment of farms, and to the choice of actions addressed by the contract. Secondly, organisational improvements can be applied to TFCs elaboration and implementation process, in order to adopt a participatory approach which would involve all rural stakeholders.     

Serological Methods for Detection of Polymyxa graminis, an Obligate Root Parasite and Vector of Plant Viruses

A purification procedure was developed to separate Polymyxa graminisresting spores from sorghum root materials. The spores were used as im-munogen to produce a polyclonal antiserum. In a direct antigen coating enzyme-linked immunosorbent assay (DAC ELISA), the antiserum could detect one sporosorus per well of the ELISA plate. In spiked root samples, the procedure detected one sporosorus per mg of dried sorghum roots. The majority of isolates of P. graminis from Europe, North America, and India reacted strongly with the antiserum. Interestingly, P. graminis isolates from the state of Rajasthan (northern India), from Pakistan, and an isolate from Senegal (West Africa) reacted weakly with the antiserum. The cross-reactivity of the serum with P. betae isolates from Belgium and Turkey was about 40% of that observed for the homologous isolate. There was no reaction with common fungi infecting roots or with the obligate parasite Olpidium brassicae. However, two isolates of Spongospora sub-terranea gave an absorbance similar to that observed with the homologous antigen. The DAC ELISA procedure was successfully used to detect various stages in the life cycle of P. graminis and to detect infection that occurred under natural and controlled environments. A simple procedure to conjugate antibodies to fluorescein 5-isothiocyanate (FITC) is described. Resting spores could be detected in root sections by using FITC-labeled antibodies. The potential for application of the two serological techniques for studying the epidemiology of peanut clump disease and for the characterization of Polymyxa isolates from various geographical origins is discussed.     

Identification of pathogenic Leptospira strains in tissues of a premature foal by use of polymerase chain reaction analysis.

Studies were carried out to determine the cause of death in a prematurely born Thoroughbred foal that died 24 hours after birth. Necropsy revealed gross lesions suggestive of septicemia. A commercial Leptospira polymerase chain reaction (PCR) assay designed to specifically amplify the hemolysis-associated protein 1 (hap1) gene present only in pathogenic Leptospira strains detected the presence of Leptospira DNA in various tissues of the foal. Histologic examination of lung, liver, kidney, and myocardium revealed numerous spirochetes in Warthin-Starry-stained tissue sections. Results of PCR analysis and histologic examination suggested a leptospiral infection in the newborn foal. At the moment of death, the infection coexisted with a streptococcal-associated aspiration bronchopneumonia and postpartum septicemia. These findings indicate that the PCR assay based on the amplification of the hap1 gene represents a useful tool for specific detection of pathogenic leptospira in field samples taken from horses.     

Dietary fibre and indigestible protein increase ileal glycoprotein output without impacting colonic crypt goblet cells in weaned piglets

Mucus plays an important role in gut health by favouring colonisation resistance. The aim of this study was to quantify the impact of fibre and protein on mucin recovery in ileal digesta and on goblet cell histochemistry in the proximal colon. A control diet with highly digestible protein and low fibre and three complex diets containing indigestible protein associated with low, soluble or insoluble fibre sources were tested for 14 days in piglets weaned at 28 days of age. Mucin concentration was determined by ethanol precipitation. Goblet cell subtypes in colonic crypts were analysed by histochemistry. The ileal mucin output was higher with the complex diets than with the control diet (31.6 on average vs 21.7 g/kg DM intake). Increases observed with the low and soluble fibre diets were similar (34 g/kg DM intake). This suggests a limited effect of soluble fibre in presence of indigestible protein. Surprisingly, the observed increase was lower with insoluble fibre (27.2 g/kg DM intake). DM and N output and digestibility were not affected by the diets, but a linear relationship was found between DM and mucin output. In proximal colon, crypt depth, goblet cell numbers per crypt and glycosylation subtypes were not affected by the diet suggesting no change in the capacity of mucus to protect the gut. To conclude, introducing highly indigestible protein in the diet increased ileal mucin output, without effects of these factors on crypt goblet cell patterns in the proximal colon. Introducing fibre in a diet containing highly indigestible protein had a marginal effect.     

Effect of feeding fermentable fiber on synthesis of total and mucosal protein in the intestine of the growing pig

In a previous study, a reduced efficiency of ileal digestible threonine (THR) use for body protein deposition was observed in growing pigs when pectin was included in the diet. This response was not due to increased physical endogenous ileal THR loss. Our aim was to explore the contribution of diet-induced increases in protein synthesis in the colon, especially mucins, to dietary THR requirements. Twelve barrows (21 kg mean BW) were fed either a cornstarch–soybean meal-based diet (Control) or Control with 12% pectin (Pectin). Pigs were given intravenously 1.5 mmol/kg BW of L-1-¹³C valine (40 mol%) to measure fractional and absolute synthesis rates (FSR, ASR, respectively) of mucosal and whole intestinal protein in the jejunum and colon. Dietary pectin inclusion increased plasma levels of glucose, isoleucine and glutamine (P < 0.05) but had no effect on insulin or urea nitrogen (P > 0.10). There were no differences in FSR and ASR of whole intestinal protein in jejunum and colon (P > 0.10). The FSR of mucosal proteins in colon, not in jejunum, was increased with dietary pectin supplementation (P < 0.05). Assuming mucosal protein mass is constant, these results imply that the higher protein synthesis in colon mucosa contributes to the reduced THR efficiency observed in pectin-supplemented diet.     

Purification of chinook salmon (Oncorhynchus tshawytscha) GH for receptor study

A method for the purification of chinook Salmon (Oncorhynchus tshawytscha) GH, which retains its biological activity, is described. The biological activity was investigated with an established radioreceptor assay using liver membranes from pregnant rabbits and bovine GH as standard and labelled hormone. The enrichment of the preparation was checked with electrophoresis (SDS-PAGE). Extraction and further steps were carried out using low molarity alkaline buffer (pH 8–10, M = 100 mM). Three chromatography steps were performed (Concanavalin-A sepharose, Bio-gel P60, DEAE). Ion exchange chromatography was performed under isocratic conditions (using a 50 cm column). Two isoforms (sGH1 and sGH2) were isolated. The purification yield is 0.7% compared to lyophilized pituitaries. The molecule is homogeneous in SDS-PAGE. Contamination by prolactin, gonadotrophin and corticotrophin is negligible (< 0.5%). It could be demonstrated that the biological activity of the preparation is maintained since this preparation stimulates the growth of juvenile trout (Salmo gairdneri) and binds specifically (35%) to trout liver membranes.     

Range fidelity: The missing link between caribou decline and habitat alteration?

Conservation of forest-dwelling caribou (Rangifer tarandus caribou) is of great concern across most of its range. Anthropogenic disturbances, primarily logging activities, have been identified as the most important cause of caribou decline, although the mechanisms underlying this decline are not fully understood. Caribou commonly display fidelity to calving sites or seasonal ranges, but the potential role of this life-history trait has been largely overlooked in research and conservation planning. This is surprising because sites and ranges with high inter-annual use should have high conservation value. We investigated the relationship between habitat disturbances and home-range fidelity of forest-dwelling caribou across three study sites in Québec, Canada, using a broad range of natural and anthropogenic disturbances. Between 2004 and 2007, we tracked 47 adult female caribou using GPS collars. Home-range fidelity varied between seasons, being higher during calving and summer, and lower during winter. Caribou reduced fidelity following natural and anthropogenic disturbances, the latter having a stronger negative influence. Anthropogenic disturbances had a strong negative impact on home-range fidelity during annual, summer and winter periods, whereas natural disturbance was the dominant factor during calving. Despite this negative influence on fidelity, caribou tended to demonstrate range fidelity even in study sites most impacted by human activities. Habitat disturbances could produce two possible outcomes for caribou conservation: (1) a trend for females to reduce home-range fidelity which could translate into lower calf and female caribou survival through reduced familiarity with food distribution, escape cover and predation risk and (2) a global tendency to maintain range fidelity even in a drastically modified landscape which could turn into an ecological trap, particularly for calves when predation risk increases due to increased black bear density in early successional forests. Taking range fidelity behavior into consideration during forest management planning could direct conservation efforts toward the best available sites and therefore facilitate caribou persistence in managed landscapes.     

Weed management and irrigation are key treatments in emerging black truffle (Tuber melanosporum) cultivation

Interest in conversion of marginal agricultural lands to small oak woodlands for the production of black truffles (Tuber melanosporum Vittad.) is increasing in the native black truffle areas of France, Spain and Italy as well as suitable or amended sites throughout the world due to high economic returns for gastronomically valuable truffles. Successful long-term management of a perennial plantation replacing an annual crop requires understanding the system in all phases of the life cycle, and in the case of truffles this involves understanding the interactive growth of the aboveground host and the belowground symbiotic ectomycorrhizal fungus whose fruitbody is the desired truffle. Here we focus on the pre-production phase, 4 years after establishing the truffle-oak plantation and prior to truffle production. We tested the influence of weed control, irrigation and fertilizer, each at 3 levels, on plant growth and ectomycorrhizal proliferation in three truffle-oaks plantations in northeast Spain. Results show that adequate weed control improves root and shoot dry weight while fertilizer and irrigation treatments did not influence plant growth. The low dose of irrigation (50% of the estimated water deficit for the site) and glyphosate weed control both increased total root tips/plant and T. melanosporum colonized tips (ectomycorrhizae) by approximately two-fold, compared to control treatments. Distribution of the ectomycorrhizae within the soil profile was significantly influenced by the low dose irrigation treatment, with increases observed in the 10?C20 cm and the 20?C30 cm deep layers compared to the control and high irrigation treatments. Four years after planting, T. melanosporum remained the dominant fungal symbiont, despite the presence of 14 other ectomycorrhizal morphotypes from these sites.     

Reference evapotranspiration estimation without local climatic data

The Penman–Monteith equation for reference evapotranspiration (ET_o) estimation cannot be applied in many situations, because climatic records are totally or partially not available or reliable. In these cases, empirical equations that rely on few climatic variables are necessary. Nevertheless, the uncertainty associated with empirical model estimations is often high. Thus, the improvement of methods relying on few climatic inputs as well as the development of emergency estimation tools that demand no local climatic records turns into a task of great relevance. The present study describes different approaches based on multiple linear regression, simple regression and artificial neural networks (ANNs) to deal with ET_o estimation exclusively from exogenous records from secondary stations. This cross-station approach is based on a continental characterization of the study region, which enables the selection and hierarchization of the most suitable ancillary data supplier stations. This procedure is compared with different traditional and cross-station approaches, including methodologies that also consider local temperature inputs. The proposed methods are also evaluated as gap infilling procedures and compared with a simple methodology, the window averaging. The artificial neural network and the multiple linear regression approaches present very similar performance accuracies, considerably higher than simple regression and traditional temperature-based approaches. The proposed input combinations allow similar performance accuracies as ANN models relying on exogenous ET_o records and local temperature measurements. The cross-station multiple linear regression procedure is recommended due to its higher simplicity.