Genetic diversity and relatedness estimates for captive barramundi (Lates calcarifer,Bloch) broodstock informs efforts to form a base population for selective breeding

Aquaculture of barramundi or Asian seabass (Lates calcarifer) is growing in both Australia and Southeast Asia and there is substantial interest to improve production efficiency through selective breeding. The establishment of a large and genetically diverse base population is a prerequisite for a sustainable and long‐term productive breeding program. Before selective breeding programs can begin for Australian barramundi it is important to assess the overall genetic diversity of current captive broodstock populations. To address this question, 407 captive barramundi broodstock from eight separate Australian broodstock populations were genotyped using 16 polymorphic microsatellite DNA markers. A Bayesian STRUCTURE analysis indicated that captive Australian broodstock are broadly divided into two genetic stocks. Multivariate analysis between broodstock individuals and pairwise F_ST between broodstock populations also supported the existence of two stocks. Comparisons with data obtained from natural stocks suggested that hatchery individuals were either sourced from the two stocks or represented an admixture between them. Genetic diversity was low within each broodstock population (allelic richness ranged from 2.67 to 3.42 and heterozygosity ranged from 0.453 to 0.537) and relatedness estimates within hatcheries were generally low (average r was equal to 0.141). We recommend sourcing captive individuals according to high levels of neutral genetic diversity and low levels of relatedness for the establishment of a base population. We also make recommendations about including genetically diverse wild individuals.     

Water savings, nutrient leaching, and fruit yield in a young avocado orchard as affected by irrigation and nutrient management

This project was designed to determine the effect of fertilizer rate and irrigation scheduling on water use, nutrient leaching, and fruit yield of young avocado trees (Persea americana Mill. cv. Simmonds). Seven nutrient and irrigation management practices were evaluated: (1) irrigation based on crop evapotranspiration (ET) with 50% fertilizer at a standard rate (FSR); (2) ET irrigation with FSR (typical for avocado production in the area); (3) ET irrigation with 200% FSR; (4) irrigation based on exceedance of 15-kPa (SW) soil water suction with 50% FSR; (5) SW with FSR; (6) SW with 200% FSR; and (7) irrigation at a set schedule (based on timing and frequency typically used in local avocado production) with FSR. The SW with FSR treatment saved 87% of the water volume applied and reduced total phosphorus leached by 74% compared to the set schedule irrigation with FSR. The SW with FSR treatment had higher avocado fruit production, tree water-use efficiency, and fertilizer-use efficiency than the other six treatments. Thus, the use of soil water monitoring for irrigation management can substantially increase sustainability of young avocado orchards in southern Florida.     

Impact of foot-and-mouth disease on mastitis and culling on a large-scale dairy farm in Kenya

Foot and mouth disease (FMD) is a highly transmissible viral infection of cloven hooved animals associated with severe economic losses when introduced into FMD-free countries. Information on the impact of the disease in FMDV-endemic countries is poorly characterised yet essential for the prioritisation of scarce resources for disease control programmes. A FMD (virus serotype SAT2) outbreak on a large-scale dairy farm in Nakuru County, Kenya provided an opportunity to evaluate the impact of FMD on clinical mastitis and culling rate. A cohort approach followed animals over a 12-month period after the commencement of the outbreak. For culling, all animals were included; for mastitis, those over 18 months of age. FMD was recorded in 400/644 cattle over a 29-day period. During the follow-up period 76 animals were culled or died whilst in the over 18 month old cohort 63 developed clinical mastitis. Hazard ratios (HR) were generated using Cox regression accounting for non-proportional hazards by inclusion of time-varying effects. Univariable analysis showed FMD cases were culled sooner but there was no effect on clinical mastitis. After adjusting for possible confounders and inclusion of time-varying effects there was weak evidence to support an effect of FMD on culling (HR = 1.7, 95% confidence intervals [CI] 0.88-3.1, P = 0.12). For mastitis, there was stronger evidence of an increased rate in the first month after the onset of the outbreak (HR = 2.9, 95%CI 0.97-8.9, P = 0.057).

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-015-0173-4) contains supplementary material, which is available to authorized users.     

Effectiveness of Protected Area Governance in the Conservation of Mt. Marsabit Forest Ecosystem,Kenya

ABSTRACT

Protected area systems (PAs) have the potential to conserve natural resources and provide social and economic benefits to local communities. Establishing and maintaining good governance and associated mechanisms is necessary for adaptive management of PAs. To test this hypothesis, we analyzed the relationships between various stakeholders and the effectiveness of PA governance of Mt. Marsabit forest ecosystem in Kenya. We used social network analysis (SNA) to assess the interactions between actors, and factor analysis to analyze the effectiveness of governance criteria. Governance of Mt. Marsabit forest ecosystem was complex with a multiplicity of stakeholders from diverse interests. Governance was moderately effective (61%) with positive indicators including the regulatory framework, delineation of areas under conservation, and reduction in poaching. The low level of interactions and associations among stakeholders suggest a weakness in the networks that may negatively affect the flow of information and other resources. This weakness was attributed to a lack of institutionalization of the links leading to poor coordination of processes. Local communities were inadequately represented in the governance of this PA despite being important actors. Our study finds that local ownership and strong linkages between actors are important ingredients for effective governance of PAs.     

Outbreak of bovine clinical mastitis caused by Mycoplasma bovis in a North Italian herd

This report describes an outbreak of Mycoplasma bovis mastitis affecting 45 cows in a herd of 122 dairy cattle in Northern Italy. Clinically, the outbreak was characterized by agalactia, multiple swollen and painless quarters, high milk somatic cell count and unresponsiveness to conventional antibiotic therapy. M. bovis was isolated from the milk samples of all the 32 affected cows tested and from the mammary tissue of three affected cows that underwent necropsy. No other pathogens were isolated from these samples. Lesions in two of the necropsied cows were characterized by mild chronic suppurative mastitis and galactophoritis. The other necropsied cow showed a chronic necrosuppurative and pyogranulamaous galactophoritis, a condition not previously associated with M. bovis. M. bovis was detected immunohistochemically in the lumen of the affected mammary ducts suggesting that ascending infection via the teat canal was the likely route of transmission. No other intralesional pathogens were demonstrated microscopically.     

Early origin and recent expansion of Plasmodium falciparum

The emergence of virulent Plasmodium falciparum in Africa within the past 6000 years as a result of a cascade of changes in human behavior and mosquito transmission has recently been hypothesized. Here, we provide genetic evidence for a sudden increase in the African malaria parasite population about 10,000 years ago, followed by migration to other regions on the basis of variation in 100 worldwide mitochondrial DNA sequences. However, both the world and some regional populations appear to be older (50,000 to 100,000 years old), suggesting an earlier wave of migration out of Africa, perhaps during the Pleistocene migration of human beings.     

Bordetella bronchiseptica-reactive antibodies in Canadian polar bears

Bordetella bronchiseptica is a promiscuous bacterium that infects a variety of species but has not been reported in free-ranging polar bears (Ursus maritimus). Sera from 385 polar bears from the western Hudson Bay region, 1986 to 2017, were tested for reactivity to B. bronchiseptica with enzyme-linked immunosorbent assays using anti-canine IgG and Streptococcus protein G as secondary reagents. Sera from bears had variable reactivity to B. bronchiseptica antigens, and there was no difference among bears that had a history of coming near the town of Churchill, Manitoba, and bears that did not. Although the sources of exposure were not determined, equivalent results in both groups suggest that potential exposure to humans (aside from handling during sampling) and their animals (dogs) was not an important co-factor in sero-positivity to B. bronchiseptica.