Temporal and spatial progress of the diseases caused by the crinivirus tomato chlorosis virus and the begomovirus tomato severe rugose virus in tomatoes in Brazil

Efficient management of whitefly-borne diseases remains a challenge due to the lack of a comprehensive understanding of their epidemiology, particularly of the diseases tomato golden mosaic and tomato yellowing. Here, by monitoring 16 plots in four commercial fields, the temporal and spatial distribution of these two diseases were studied in tomato fields in Brazil. In the experimental plots these diseases were caused by tomato severe rugose virus (ToSRV) and tomato chlorosis virus (ToCV), respectively. The incidence of each virus was similar in the plots within a field but varied greatly among fields. Plants with symptoms for both diseases were randomly distributed in three of four spatial analyses. The curves representing the progress of both diseases were similar and contained small fluctuations, indicating that the spread of both viruses was similar under field conditions. In transmission experiments of ToSRV and ToCV by Bemisia tabaci MEAM1 (former biotype B), these viruses had a similar transmission rate in single or mixed infections. It was then shown that primary and secondary spread of ToCV were not efficiently controlled by insecticide applications. Finally, in a typical monomolecular model of disease progress, simulation of the primary dissemination of ToSRV and ToCV showed that infected plants were predominantly randomly distributed. It is concluded that, although the manner of vector transmission differs between ToSRV (persistent) and ToCV (semipersistent), the main dispersal mechanisms are most probably similar for these two diseases: primary spread is the predominant mechanism, and epidemics of these diseases have been caused by several influxes of viruliferous whiteflies.     

Evidence of sedimentation inequality along riparian areas colonised by Impatiens glandulifera (Himalayan balsam)

Soil loss from riparian areas supporting the annual invasive weed, Impatiens glandulifera (Himalayan balsam), was measured and compared with equivalent values recorded at nearby, topographically similar areas supporting perennial vegetation over a cumulative seven-year period, along sections of two separate river systems; one in Switzerland, and one in the UK. Soil loss from colonised locations was significantly greater than from reference locations in four of the seven measurement periods. Despite contrasting results, standard deviations, based on soil losses and gains, were predominantly higher for colonised areas at both rivers over most monitoring periods. These findings indicated that areas colonised by Himalayan balsam experience higher sediment flux in comparison with areas free of invasion. Here, we test those original interpretations by reinterrogating the datasets using a more robust analysis of inequality. Nine datasets were tested, five of which (i.e. 56%) showed that sediment flux was significantly greater at Himalayan balsam-invaded areas than at reference areas. Three datasets showed no difference in sediment flux between invaded and reference areas (33%), and one (11%) showed higher sediment flux at reference areas. Most results uphold our original interpretations and support our hypothesis that hydrochory probably dictates where colonisation initially occurs, by depositing Himalayan balsam seeds in slack or depressional areas along river margins. Once Himalayan balsam becomes established and sufficient perennial vegetation is displaced, seasonal die-off and depleted vegetation cover may increase the risk that some areas will experience significantly higher sediment flux.     

Correction to: Individual based modelling of fish migration in a 2-D river system: model description and case study

Landscape Ecology - In the original publication of the article, the third author name has been misspelt. The correct name is given in this Correction. The original version of this article was revised.     

Prevalence,geographic distribution and phenotypic differences of Piscirickettsia salmonis EM‐90‐like isolates

Early reports accounted for two main genotypes of Piscirickettsia salmonis, a fish pathogen and causative agent of piscirickettsiosis, placing the single isolate EM‐90 apart from the prototypic LF‐89 and related isolates. In this study, we provide evidence that, contrary to what has been supposed, the EM‐90‐like isolates are highly prevalent and disseminated across Chilean marine farms. Molecular analysis of 507 P. salmonis field isolates derived from main rearing areas, diverse hosts and collected over 6 years, revealed that nearly 50% of the entire collection were indeed typed as EM‐90‐like. Interestingly, these isolates showed a marked host preference, being recovered exclusively from Atlantic salmon (Salmo salar) samples. Although both strains produce undistinguishable pathological outcomes, differences regarding growth kinetics and susceptibility to the antibiotics and bactericidal action of serum could be identified. In sum, our results allow to conclude that the EM‐90‐like isolates represent an epidemiologically relevant group in the current situation of piscirickettsiosis. Based on the consistency between genotype and phenotype exhibited by this strain, we point out the need for genotypic studies that may be as important for the Chilean salmon industry as the continuous surveillance of antimicrobial susceptibility patterns.     

Optimal dietary carbohydrate‐to‐lipid ratios for silvery‐black porgy (Sparidentex hasta) juveniles

Four isonitrogenous diets containing different carbohydrate:lipid (CHO:L) ratios (0.3, 0.6, 1.1 and 1.8) were tested in triplicate groups (16 fish per replicate) of silvery‐black porgy juveniles for 8 weeks. Growth performance was not affected by different dietary CHO:L ratios (P > 0.05); however, the viscerosomatic index, the intraperitoneal fat, whole‐body lipid, energy and n‐3 long chain polyunsaturated fatty acids levels increased with decreasing dietary CHO:L ratios (P < 0.05). Fish fed with 1.8 CHO:L diet had the lowest apparent digestibility coefficients of protein and lipid, as well as the lowest plasma haemolytic and lysozyme activities (P < 0.05). Red blood cell counts and plasma glucose levels were higher in fish fed with 1.1 and 1.8 CHO:L ratio diets than in the other groups (P < 0.05). Plasma alkaline phosphatase and alanine aminotransferase, as well as the level of lipid peroxidation and total antioxidant capacity in the liver and plasma increased as dietary CHO:L ratios decreased (P < 0.05). The results of the current study indicated that the diets with CHO:L ratios between 0.6 and 1.1 are optimal for silvery‐black porgy, whereas higher ratios may result in hyperglycaemia and immune suppression, and lower CHO:L ratios may lead to oxidative stress and liver dysfunction.     

Effects of Natural and Artificial Colorants on Hot Smoked Garfish—Belone belone (Linnaeus, 1761)—Stored at 4 ± 1ºC

In this study, the effects of natural and artificial colorants on the shelf life of hot smoked garfish were investigated in terms of its chemical, microbiological, and sensory quality. Turmeric and Sunset Yellow FCF were used as the natural and artificial colorants, respectively. The amount of total volatile basic nitrogen (TVB-N) and thiobarbituric acid (TBA), counts of total mesophilic aerobic bacteria, total psychrophilic aerobic bacteria, total yeast and molds increased during the storage (p < 0.05). The results showed that turmeric and Sunset Yellow FCF had a significant effect on pH value and salt content of hot smoked garfish samples during storage (p < 0.05). According to the sensory analysis results, the shelf life of hot smoked garfish stored at 4 ± 1ºC was determined as 17 days.     

Temperature modulates liver lipid accumulation in Atlantic salmon (Salmo salar L.) fed low dietary levels of long‐chain n‐3 fatty acids

Atlantic salmon (Salmo salar) were fed five graded levels of eicosapentaenoic acid (EPA, 20:5n‐3) and docosahexaenoic acid (DHA, 22:6n‐3), from 1.4 to 5.2% of total fatty acids (FA, 5–17 mg kg^?1 feed), and grew from ~160 g to ~3000 g, with the period from 1450 g onwards conducted both at 6 °C and at 12 °C. All fish appeared healthy, and there were no diet‐related differences in haematological or plasma parameters, as well as intestinal histological or gut microbiota analysis. Fish reared at 6 °C had higher accumulation of storage lipids in the liver compared to fish reared at 12 °C. Liver lipids also increased with decreasing dietary EPA + DHA at 6 °C, while there was no such relationship at 12 °C. Gene expression of SREBP1 and 2, LXR, FAS and CPT1 could not explain the differences in liver lipid accumulation. In liver polar lipids, DHA was found to be reduced when dietary EPA + DHA was <2.7% of FAs, while the level of EPA in the membranes was not affected. In conclusion, reducing dietary EPA + DHA from 5.2 to 1.4% of total FAs had a minor impact on fish health. Temperature was the factor that most affected the liver lipid accumulation, but there was also an interaction with dietary components.     

南疆植被总初级生产力对区域降水的响应规律

为研究总初级生产力(Gross primary productivity,GPP)对区域降水的响应规律,本研究通过对南疆地区喀什、阿克苏、和田3个市2000—2014年的GPP进行分析,得出GPP的时空分布规律,进而与2000—2011年同期的降水进行耦合分析,以探寻植被GPP与降水之间的响应关系,从而为南疆地区植被生态保持和可持续发展提供依据。结果表明:1)从时间尺度来看,GPP呈现出与季节相关的波动性,年均GPP的极值点基本出现在每年的7月;2)在空间分布上,和田地区的GPP在空间上呈现北低南高的空间格局,阿克苏地区的GPP呈现北高南低的空间格局,并且在数值上存在较大的差异性,喀什地区的GPP呈现北高南低的空间格局,西北部GPP分布比较集中并有较高的值;3)变化趋势上,和田地区呈现上升趋势、阿克苏地区整体比较稳定、喀什地区呈现上升的趋势;4)研究区域内GPP与降水之间均为正相关关系。当降水滞后1个月时,和田及喀什GPP与降水之间的相关系数显著提高,但是阿克苏地区没有表现出时滞性,说明响应关系更加明显。     

Root distribution patterns of peanut genotypes with different drought resistance levels under early‐season drought stress

Drought severely limits crop yield of peanut. Yet cultivars with enhanced root development enable the exploration of a greater volume of soil for water and nutrients, helping the plant survive. Root distribution patterns of three genotypes (ICGV 98305, ICGV 98324 and Tifton‐8) were compared when grown in well‐watered rhizoboxes and when grown in rhizoboxes where an early‐season drought was imposed using rain‐exclusion shelters. The treatments were arranged in a completely randomized design with three replications, and the experiment was conducted during two seasons at the Field Crop Research Station of Khon Kaen University, in Khon Kaen, Thailand. The root system of ICGV 98305, when grown under drought, had a significantly higher root length in the 30–110 cm deep soil layers and less roots in the 0–30 cm soil layers when under drought than when grown under well‐watered conditions. Roots of Tifton‐8 had the largest reductions in root length in upper soil layer and reduced in most soil layers. Tifton‐8 grown under drought was smaller than under well‐watered control for all root traits, showing negative response to drought. The peanut genotypes with high root traits in deeper soil layer under early‐season drought might contribute to drought avoidance mechanism.