Real-time RT-qPCR assay to detect sequences in the Piscine orthoreovirus-1 genome segment S1 associated with heart and skeletal muscle inflammation in Atlantic salmon

During the last decade, Piscine orthoreovirus was identified as the main causative agent of heart and skeletal muscle inflammation (HSMI) in Atlantic Salmon, Norway. A recent study showed that PRV-1 sequences from salmonid collected in North Atlantic Pacific Coast (NAPC) grouped separately from the Norwegian sequences found in Atlantic Salmon diagnosed with HSMI. Currently, the routine assay used to screen for PRV-1 in NAPC water and worldwide cannot differentiate between the two groups of PRV-1. Therefore, this study aimed at developing a real-time polymerase chain reaction (RT-qPCR) assay to target the PRV-1 genome segments specific for variants associated with HSMI. The assay was optimized and tested against 71 tissue samples collected from different regions including Norway, Chile and both coast of Canada and different hosts farmed Atlantic Salmon, wild Coho Salmon and escaped Atlantic Salmon collected in British Columbia, West Coast of Canada. This assay has the potential to be used for screening salmonids and non-salmonids that may carry PRV-1 potentially causing HSMI.     

Neighbourhood character affects the spatial extent and magnitude of the functional footprint of urban green infrastructure

Landscape Ecology - Urban densification has been argued to increase the contrast between built up and open green space. This contrast may offer a starting point for assessing the extent and...     

Modified full-sib selection and best linear unbiased prediction of progeny performance in a European F2 maize population

Four cycles of modified recurrent full‐sib (FS) selection were conducted in an intermated F₂ population of European flint maize. The objectives of our study were to monitor trends across selection cycles in the estimates of population mean, inbreeding coefficients and variance components, and to investigate the usefulness of best linear unbiased prediction (BLUP) of progeny performance under the recurrent FS selection scheme applied. We used a selection rate of 25% for a selection index, based on grain yield and dry matter content. A pseudo‐factorial mating scheme was used for recombination. In this scheme, the selected FS families were divided into an upper‐ranking group of parents mated to the lower‐ranking group. Variance components were estimated with restricted maximum likelihood (REML). Average grain yield increased 1.2 t/ha per cycle, average grain moisture decreased 20.1 g/kg per cycle, and the selection index relative to the F₂ check entries decreased 0.3% per cycle. For a more precise calculation of selection response, the four cycles should be tested together in multi‐environmental trials. We observed a significant decrease in additive variance in the selection index, suggesting smaller future selection response. Predictions of FS family performance in Cn + 1 based on mean performance of parental FS families in Cn were of equal precision as those based on the mean additive genetic BLUP of their parents, and corresponding correlations were of moderate size for grain moisture and selection index.     

Displacement imaging in porous media using the line scan NMR technique

Displacement imaging is a recent, powerful NMR method with which distributions of displacements can be acquired of e.g. fluids within a porous medium. Both motion parallel and perpendicular to the flow direction may be observed within a time window of a few milliseconds to several seconds. By combining displacement imaging with the line scan technique, one-dimensionally resolved measurements with a high temporal resolution ( < 1 min) of the spatial dependency of motion can be obtained. Here we present displacement images of flow through two simple model systems for soil: an unconsolidated glass bead water system and a sintered glass bead filter. It is demonstrated that the combination of displacement imaging and spatial resolution along a line is important to access both bulk displacement and local displacements in relation to the local porosity.     

Homogenization conditions affect the oxidative stability of fish oil enriched milk emulsions: oxidation linked to changes in protein composition at the oil-water interface

Fish oil was incorporated into milk under different homogenization temperatures (50 and 72 degrees C) and pressures (5, 15, and 22.5 MPa). Subsequently, the oxidative stability of the milk and changes in the protein composition of the milk fat globule membrane (MFGM) were examined. Results showed that high pressure and high temperature (72 degrees C and 22.5 MPa) resulted in less lipid oxidation, whereas low pressure and low temperature (50 degrees C and 5 MPa) resulted in faster lipid oxidation. Analysis of protein oxidation indicated that especially casein was prone to oxidation. The level of free thiol groups was increased by high temperature (72 degrees C) and with increasing pressure. Furthermore, SDS-PAGE and confocal laser scanning microscopy (CLSM) indicated that high temperature resulted in an increase in beta-lactoglobulin adsorbed at the oil-water interface. This was even more pronounced with higher pressure. Less casein seemed to be present at the oil-water interface with increasing pressure. Overall, the results indicated that a combination of more beta-lactoglobulin and less casein at the oil-water interface gave the most stable emulsions with respect to lipid oxidation.     

Cross-sectional study on acrylamide hemoglobin adducts in subpopulations from the European Prospective Investigation into Cancer and Nutrition (EPIC) Study

Acrylamide exposure was investigated in subgroups of the EPIC study population (510 subjects from 9 European countries, randomly selected and stratified by age, gender, and smoking status) using hemoglobin adducts of acrylamide (HbAA) and its primary metabolite glycidamide (HbGA). Blood samples were analyzed for HbAA and HbGA by HPLC/MS/MS. Statistical models for HbAA and HbGA were developed including body mass index (BMI), educational level, and physical activity. A large variability in acrylamide exposure and metabolism between individuals and country groups was observed with HbAA and HbGA values ranging between 15-623 and 8-377 pmol/g of Hb, respectively. Both adducts differed significantly by country, sex, and smoking status. HbGA values were significantly lower in high alcohol consumers than in moderate consumers. With increasing BMI, HbGA in nonsmokers and HbAA in smokers decreased significantly. In the assessment of potential health effects related to acrylamide exposure, country of origin, BMI, alcohol consumption, sex, and smoking status should be considered.     

Determinants of floodplain forest development illustrated by the example of the floodplain forest in the District of Leipzig

This paper discusses determinants of the historical and current spatial extent of the floodplain forest in Leipzig as well as its tree species composition using a GIS-data based delineation model and historical forest inventories for the floodplain forest in the district of Leipzig in Germany from the 19th to the 20th century. We found that the spatial extent of the floodplain forest remained considerably stable in spite of an overall decline in the entire floodplain area from the period where the city first experienced industrialisation in the 19th century to now. However, with river regulations and the alteration of forest management from coppice-with-standards forest to high forest in the 19th century, major changes can be found in the tree species composition of the floodplain forest. Comparing these findings with references from other European floodplain forests we discuss the impact of historical and current forest management as well as the city location's influence on the extent and tree species composition of urban floodplain forests. For urban forest management in particular there is a great need to integrate biophysical, historical and forestry knowledge when predicting future developmental trends.     

Morphology and ionization of the interstellar cloud surrounding the solar system

The first encounter between the sun and the surrounding interstellar cloud appears to have occurred 2000 to 8000 years ago. The sun and cloud space motions are nearly perpendicular, an indication that the sun is skimming the cloud surface. The electron density derived for the surrounding cloud from the carbon component of the anomalous cosmic ray population in the solar system and from the interstellar ratio of Mg(+) to Mg degrees toward Sirius support an equilibrium model for cloud ionization (an electron density of 0.22 to 0.44 per cubic centimeter). The upwind magnetic field direction is nearly parallel to the cloud surface. The relative sun-cloud motion indicates that the solar system has a bow shock.