Phenotypic indicators for cultured pearl size improvement in the black‐lipped pearl oyster (Pinctada margaritifera): towards selection for the recipient growth performance

The black‐lipped pearl oyster, Pinctada margaritifera, is the most important farmed species in French Polynesia and the basis of the most valuable export industry. Mass production of black pearls relies on a surgical operation requiring tissue from a donor pearl oyster to be grafted, together with a nucleus made of shell, into the gonad of a recipient oyster. Improving pearl size through family selection remains one of the main challenges for future aquaculture development. This study analyses the relative contribution of donor and recipient oysters to pearl size. To this end, hatchery‐produced donor oysters of two batches, large and small (based on shell height), were used to supply grafts for recipients, which were then monitored individually for their growth performance by recording shell height, width, and thickness, and total live weight (flesh + shells) every 6 months (four biometric measurement times) over 20 months of culture. Pearls issued from the two batches of donors showed no significant differences in nacre weight or thickness. In contrast, recipient oyster shell height and total weight were increasingly positively correlated with these pearl size parameters over the culture period, becoming significant at 8 months post‐grafting. Potential therefore exists to use shell height and oyster weight as phenotypic indicators for selective breeding of recipient oysters with high growth performance to increase pearl size in P. margaritifera.     

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

Background

Fixed arrays of single nucleotide polymorphism (SNP) markers have advantages over reduced representation sequencing in their ease of data analysis, consistently higher call rates, and rapid turnaround times. A 6 K SNP array represents a cost-benefit “sweet spot” for routine genetics and breeding applications in rice. Selection of informative SNPs across species and subpopulations during chip design is essential to obtain useful polymorphism rates for target germplasm groups. This paper summarizes results from large-scale deployment of an Illumina 6 K SNP array for rice.

Results

Design of the Illumina Infinium 6 K SNP chip for rice, referred to as the Cornell_6K_Array_Infinium_Rice (C6AIR), includes 4429 SNPs from re-sequencing data and 1571 SNP markers from previous BeadXpress 384-SNP sets, selected based on polymorphism rate and allele frequency within and between target germplasm groups. Of the 6000 attempted bead types, 5274 passed Illumina’s production quality control. The C6AIR was widely deployed at the International Rice Research Institute (IRRI) for genetic diversity analysis, QTL mapping, and tracking introgressions and was intensively used at Cornell University for QTL analysis and developing libraries of interspecific chromosome segment substitution lines (CSSLs) between O. sativa and diverse accessions of O. rufipogon or O. meridionalis. Collectively, the array was used to genotype over 40,000 rice samples. A set of 4606 SNP markers was used to provide high quality data for O. sativa germplasm, while a slightly expanded set of 4940 SNPs was used for O. sativa X O. rufipogon populations. Biparental polymorphism rates were generally between 1900 and 2500 well-distributed SNP markers for indica x japonica or interspecific populations and between 1300 and 1500 markers for crosses within indica, while polymorphism rates were lower for pairwise crosses within U.S. tropical japonica germplasm. Recently, a second-generation array containing ~7000 SNP markers, referred to as the C7AIR, was designed by removing poor-performing SNPs from the C6AIR and adding markers selected to increase the utility of the array for elite tropical japonica material.

Conclusions

The C6AIR has been successfully used to generate rapid and high-quality genotype data for diverse genetics and breeding applications in rice, and provides the basis for an optimized design in the C7AIR.

     

Thermal effects on water retention behaviour of unsaturated collapsible loess

Journal of Soils and Sediments - Temperature has a significant influence on water retention curve (WRC) because temperature affects surface tension of water and volumetric behaviour of soil....     

对节白蜡幼苗移栽育苗试验初报

大田播种不易管理，往往因种子还未发芽，苗田就长满杂草并与种子争水、争阳光，造成种子不易发芽，种子甚至发霉、变质、腐烂。而采取砂床播种，便于管理，发芽率高，出土整齐。     

Partial replacement of fishmeal with Clostridium autoethanogenum single‐cell protein in the diet for juvenile black sea bream (Acanthopagrus schlegelii)

Clostridium autoethanogenum protein (CAP) is a single‐cell protein derived from ethanol production and may have potential to become a substitute for fishmeal in aquafeeds. A 70‐day feeding trial was conducted with black sea bream (Acanthopagrus schlegelii) (mean initial weight 6.03 ± 0.09 g) to evaluate partial replacement of fishmeal with CAP in diets. Seven isonitrogenous and isoenergetic diets were formulated with graded levels of CAP (0, 4.85, 9.70, 14.55, 19.40, 38.80 and 58.20%) to replace fishmeal. The inclusion of CAP at all dietary levels tested did not significantly affect the growth performance (p > .05). Fish fed the CAP58.20% diet showed a significantly lower feeding rate, with significantly higher protein efficiency ratio and feed efficiency ratio compared with fish fed the other diets (p < .05). No statistical differences were found in dorsal muscle and whole‐body compositions. Total superoxide dismutase in serum of fish fed CAP58.20% diet was significantly lower compared with that of the control. Malondialdehyde, catalase, total antioxidant capacity and digestive enzyme activities revealed no significant differences among dietary treatments. Phosphorus retention efficiency significantly increased, and phosphorus discharge showed a downward trend with increasing CAP inclusion levels. In conclusion, the results indicated that CAP is a safe and effective alternative protein source, which can replace fishmeal in the diet of black sea bream up to 58.20%, without adverse effects on growth performance, antioxidation and digestive enzyme activity. This study has shown the potential of converting industrial waste into a high protein feed ingredient for aquafeeds.     

Distribution and habitat characteristics of three sympatric cetacean species in the coastal waters of Matang,Perak, Peninsular Malaysia

1. Coastal cetaceans in Southeast Asia are poorly studied and are particularly vulnerable to anthropogenic threats, especially in intensive fishing grounds.
2. To investigate the distribution and habitat characteristics of cetaceans in the productive coastal waters of Matang, Perak, Malaysia, boat‐based line transect surveys were conducted between 2013 and 2016.
3. The Irrawaddy dolphin (Orcaella brevirostris) was most frequently encountered at 3.87 sightings per 100 km, followed by the Indo‐Pacific finless porpoise (Neophocaena phocaenoides) at 1.72 sightings per 100 km, and the Indo‐Pacific humpback dolphin (Sousa chinensis) at 0.66 sightings per 100 km.
4. The mean group size was largest for humpback dolphins (8.4 individuals), followed by Irrawaddy dolphins (6.4 individuals), and finless porpoises (2.8 individuals).
5. Humpback dolphins exhibited a clustered distribution concentrated mainly in shallow estuarine waters (<10 m deep and <5 km from river mouths), whereas Irrawaddy dolphins were more widely distributed in farther coastal waters (<15 m deep and <15 km from river mouths), and finless porpoises were mostly found farthest from the shore in coastal waters (10–25 m deep and >15 km from river mouths).
6. The spatial distribution of the three cetaceans overlapped minimally, and this is likely to reflect the distribution of preferred prey resources, species interactions, and their differential responses to anthropogenic activities and species dominance.
7. The results from our study serve as baseline information for future research, conservation, and habitat management of these vulnerable and endangered coastal cetaceans. Conservation actions are recommended for the Matang area.

     

Requirements for the successful introduction and management of rotational irrigation

This paper attempts to identify the critical elements associated with the introduction and management of the practice of Rotational Irrigation in Taiwan, and thus to shed some light on the basic requirements for its successful adoption. While the emphasis is on this specific practice we believe it has implications for the transfer of other technologies in which physical, biological and managerial factors interact importantly.Seven irrigation associations in Taiwan were studied to identify the external conditions and system characteristics that are necessary for a successful change from continuous to rotational irrigation. Three external essentials are identified: (1) a water deficit approximating 25 percent of normal practice in the area; (2) political commitment to the change; (3) adequate financial resources for implementation and subsequent operation. Two system characteristics considered essential are: (1) physical facilities that provide for control and measurement to the level of farmer group responsibility; and (2) management patterns that provide a well-organized operating group and effective communication between the farmers and system personnel, resulting in a responsive plan of operation.Specific adaptations of the Taiwan practices to the local conditions will be necessary before effective transfer of this technology can take place elsewhere.     

沙冷杉结实特性的观测

以沙冷杉为材料,对其结实特性进行观测,结果表明:在城市人工栽培条件下,初次结实年龄为40～45 a,与野生植株基本相同,初次结实株率为31.3%;充足的光照可使结实植株和球果数量增加,温度对其无明显影响.球果着生于2 a或3 a生枝条基部,以2 a生枝条基部居多;多集中分布在树冠上部的枝条上.果鳞开裂至有种子与果鳞脱落...