Isolation and characterisation of equine influenza viruses (H3N8) from Europe and North America from 2008 to 2009

Like other influenza A viruses, equine influenza virus undergoes antigenic drift. It is therefore essential that surveillance is carried out to ensure that recommended strains for inclusion in vaccines are kept up to date. Here we report antigenic and genetic characterisation carried out on equine influenza virus strains isolated in North America and Europe over a 2-year period from 2008 to 2009. Nasopharyngeal swabs were taken from equines showing acute clinical signs and submitted to diagnostic laboratories for testing and virus isolation in eggs. The sequence of the HA1 portion of the viral haemagglutinin was determined for each strain. Where possible, sequence was determined directly from swab material as well as from virus isolated in eggs. In Europe, 20 viruses were isolated from 15 sporadic outbreaks and 5 viruses were isolated from North America. All of the European and North American viruses were characterised as members of the Florida sublineage, with similarity to A/eq/Lincolnshire/1/07 (clade 1) or A/eq/Richmond/1/07 (clade 2). Antigenic characterisation by haemagglutination inhibition assay indicated that the two clades could be readily distinguished and there were also at least seven amino acid differences between them. The selection of vaccine strains for 2010 by the expert surveillance panel have taken these differences into account and it is now recommended that representatives of both Florida clade 1 and clade 2 are included in vaccines.     

The behavior of hydrophobic,organic micropollutants in different Karst water systems

In weekly intervals water samples of bulk precipitation and different Karst waters from the vadose and phreatic zone of two hydrogeologically and hydrochemically different Karst catchment areas in Upper Franconia (F.R.G.) were taken. Water samples and additional soil, residual loam and sinter samples were analyzed for benzo(a)pyrene, fluoranthene, benzo(ghi)perylene by HPTLC and α-BHC, lindane by GC. Furthermore, partition coefficients of these micropollutants between carbonate water and top soil material, residual loam and dolomite were determined. The calculation of effective equilibrium coefficients between soil water and soil of ambient Rendolls revealed that the thin soil layer of Karst terrains acts as major pollutant sink. Furthermore, co-precipitation of pollutants can occur during the precipitation of dissolved humic material. However, due to rapid percolation of soil and Karst waters 0.3 to 3.3 % of the deposited contaminants can reach the groundwater.     

Anaesthesia of Atlantic halibut (Hippoglossus hippoglossus) Effect of pre‐anaesthetic sedation,and importance of body weight and water temperature

The efficacy of the anaesthetic agents benzocaine, metacaine (MS‐222), metomidate, 2‐phenoxyethanol, quinaldine and isoeugenol was studied in Atlantic halibut (Hippoglossus hippoglossus). Fish with an average body weight of 33 g were anaesthetized at 8 °C and fish with an average body weight of 1243 g were anaesthetized at 8 and 15 °C. Agents were tested individually and as combination anaesthesia comprising pre‐anaesthetic sedation, followed by anaesthesia. Induction and recovery times varied in relation to the body weight and water temperature. Large fish had longer induction times and shorter recovery times, and displayed reduced responsiveness to handling compared with small fish. A higher temperature resulted in shorter induction times, longer recovery times and increased responsiveness to handling. Lower dosages were used for all agents in combination anaesthesia. In small fish, this had no effect on the induction times but resulted in shorter recovery times and reduced responsiveness to handling. In large fish, combination anaesthesia resulted in shorter induction times whereas no uniform trend in recovery times and no differences in responsiveness to handling were observed. Neither individual agents nor combinations blocked all reflex reactions to external stimulation in all fish of any treatment group. MS‐222 and benzocaine, used separately or in combination anaesthesia, were the most effective agents in reducing reflex reactions.     

Current status of insecticide resistance in Q biotype Bemisia tabaci populations from Crete

BACKGROUND: A major problem of crop protection in Crete, Greece, is the control of Bemisia tabaci (Gennadius) (Homoptera: Aleyrodidae) with chemical insecticides owing to the rapid development of resistance. The aim of this study was to investigate the establishment of resistance and the underlying mechanisms to major insecticide classes with classical bioassays and known biochemical resistance markers. RESULTS: During a 2005–2007 survey, 53 Q biotype populations were collected. Application history records showed extensive use of neonicotinoids, organophosphates, carbamates and pyrethroids. High resistance levels were identified in the majority of populations (>80%) for imidacloprid (RF: 38–1958×) and α‐cypermethrin (RF: 30–600×). Low resistance levels (RF < 12) were observed for pirimiphos‐methyl. A strong correlation between resistance to imidacloprid and the number of applications with neonicotinoids was observed. Significant correlations were observed between COE and P450‐dependent monoxygenase activity with resistance to α‐cypermethrin and imidacloprid respectively. A propoxur‐based AChE diagnostic test indicated that iAChE was widespread in most populations. Resistance levels for α‐cypermethrin were increased when compared with a previous survey (2002–2003). Differentiation of LC₅₀ values between localities was observed for imidacloprid only. CONCLUSION: Bemisia tabaci resistance evolved differently in each of the three insecticides studied. Imidacloprid resistance seems less established and less persistent than α‐cypermethrin resistance. The low resistance levels for pirimiphos‐methyl suggest absence of cross‐resistance with other organophosphates or carbamates used. Copyright © 2008 Society of Chemical Industry     

High colonization by native arbuscular mycorrhizal fungi (AMF) of rubber trees in small-holder plantations on low fertility soils in North East Thailand

Rubber tree is a very important crop in Thailand, representing an essential source of income for farmers. In the past two decades, rubber tree plantations have been greatly expanding in unfavorable areas, where climate conditions are difficult and soil fertility is very poor. To optimize latex yields, mineral fertilizers have been widely used. A better understanding of the roles of the biological compartment in soil fertility is essential to determine alternative management practices to sustain soil fertility and optimize latex yields. Arbuscular mycorrhizal fungi (AMF) are widely recognized as beneficial for plants, mainly through their role in improving plant nutrient uptake. The objective of this study was to assess the AMF populations in rubber tree plantations and the impact of both soil characteristics and plantation age on these communities. Our results showed that all rubber trees were highly colonized, regardless of the soil structure and nutrient contents. AMF colonization was not affected by the age of the trees, suggesting that maintaining the symbiosis is likely to be beneficial at all stages. A better understanding and management of the microbial communities would contribute to maintaining or restoring soil fertility, leading to a better tree growth and optimized latex yield.     

Nonlocal wind-driven fjord–coast advection and its potential effect on plankton and fish recruitment

The Bergen Ocean Model (BOM), a three-dimensional physical coastal ocean model, was used for a numerical simulation experiment to investigate short-term effects of wind-generated coastal upwelling and downwelling on the dynamics of adjacent large outer and smaller inner fjords. The effect of the real alongshore wind regime on advection for an idealized fjord topography, resembling Masfjorden, western Norway, is used as an example. This modelling exercise is a supplement to, and its predictions support, the various hypotheses investigated in ecosystem simulation studies of the Masfjorden. The model predicts that coastal winds from the north cause upwelling and transport the upper water layer out from the fjords. Winds from the south cause downwelling and transport the upper water layer into the fjords. The transport is rapid and ≈50% of the upper water layer may be replaced within 1–2 days. Implications of these physical processes for the dispersal and retention of planktonic organisms and the early life stages of fish are discussed. If strong southerly winds occur frequently, this will transport planktonic organisms into the fjord and may increase the carrying capacity for planktivorous fish. In contrast, frequent strong northerly winds may reduce the abundance of planktonic organisms, including the early life stages of marine fish, and thus possibly reduce recruitment to fjord fish populations. Frequent shifts between southerly and northerly winds would cause an exchange of early life stages between neighbouring fjords and thus enhance genetic exchange.     

Sample size for diversity studies in tetraploid alfalfa (<Emphasis Type="Italic">Medicago sativa</Emphasis>) based on codominantly coded SSR markers

The number of genotypes investigated per population is important for the reliability of diversity studies. The objective of this study was to determine the sample size for the identification of differences among populations of an outcrossing autotetraploid species, alfalfa (Medicago sativa), using codominantly coded SSR markers. One hundred and twenty genotypes from each of two closely related populations were analysed with two markers. Twenty random subsamples for each of three sample sizes (10, 20 and 40 genotypes) were built. Compared to the populations with 120 genotypes, alleles that were no longer present in subsamples with 40 genotypes were mainly rare, whereas abundant alleles were also excluded in subsamples with 10 genotypes. F _ST values for pairs of subsamples between the two populations were always significantly different based on 40 genotypes, whereas for 10 genotypes more than half of the pairs were not significantly different. We concluded that 40 genotypes are a reasonable sample size for diversity studies with closely related populations of tetraploid alfalfa investigated with SSR markers. Twenty genotypes may be an economical alternative for large scale studies, but 10 genotypes were a too low number for reliable results.