Soil Characteristics Overwhelm Cultivar Effects on the Structure and Assembly of Root-Associated Microbiomes of Modern Maize

Modern breeding primarily targets crop yield traits and is likely to influence root-associated microbiomes, which play significant roles in plant growth and health. The relative importance of soil and cultivar factors in shaping root-associated microbiomes of modern maize (Zea mays L.) remains uncertain. We conducted a pot experiment in a controlled environment using three soils (Mollisol, Inceptisol, and Ultisol) and four contrasting cultivars, Denghai 605, Nonghua 816, Qiaoyu 8, and Zhengdan 958, which are widely planted in China. We used 16S rRNA gene amplicon sequencing to characterize the bacterial communities in the bulk soil, rhizosphere, and endosphere. Our results showed that the four cultivars had different shoot biomass and root exudate total organic carbon and organic acid contents. The microbiomes in the bulk soil, rhizosphere, and endosphere were different. We observed apparent community divergence between soils rather than cultivars, within which edaphic factors substantially contributed to microbiome variation. Moreover, permutational multivariate analysis of variance corroborated significant contributions of soil type but not cultivar on the root-associated microbiome structure. Differential abundance analysis confirmed that each soil presented a distinct root microbiome, while network analysis indicated different co-occurrence patterns of the root microbiome among the three soils. The core root microbiome members are implicated in plant growth promotion and nutrient acquisition in the roots. In conclusion, root-associated microbiomes of modern maize are much more controlled by soil characteristics than by cultivar root exudation. Our study is anticipated to help improve breeding strategies through integrative interactions of soils, cultivars, and their associated microbiomes.     

Partial cutting in mixedwood stands: Effects of treatment configuration and intensity on stand structure,regeneration, and tree mortality

In temperate and boreal mixedwood forests of eastern North America, partial disturbances such as insect outbreaks and gap dynamics result in the development of irregular forest structures. From a forest ecosystem management perspective, management of these forests should therefore include silvicultural regimes that incorporate medium- to high-retention harvesting. We present 12-year results of a field experiment undertaken to evaluate the effects of variable retention harvesting on stand structure, recruitment, and mortality. Treatments were gap harvesting (GAP), diameter-limit harvesting (DL), careful logging (CL), and careful logging followed by scarification (CL + SCAR), and an unharvested control. Although post-harvest basal area in the GAP treatment was significantly lower than that of controls, it maintained a diameter distribution profile and densities of balsam fir regeneration similar to those of pre-harvest conditions. Lower retention treatments (DL, CL, and CL + SCAR) tended to favor regeneration of pioneer, shade-intolerant species. Except for black spruce (for which mortality was highest in DL), stem mortality was similar among harvesting treatments. From an ecosystem management perspective, this study suggests that gap harvesting can maintain, in the short term, forest stand composition and structure similar to unharvested forests, and could be used where management objectives include the maintenance of late successional forest conditions.     

Season-specific varietal management as an option to increase rainfed lowland rice production in East African high altitude cropping systems

Due to land expansion and an increase in productivity, rice production in sub-Saharan Africa has been growing at a rate of 6% in the past decade. Rainfed rice production systems have accounted for a large share of this expansion. In these systems, the potential growing period not only depends on the length of the rainy season and thus water availability, but is often, especially in the highlands of East Africa, bordered by the onset of the cool period of the year, when low minimum temperatures compromise rice yields. The objective of this study was to investigate the yield potential of 30 rice varieties contrasting in crop duration and cold tolerance in the highlands of East Africa, with its limited length of growing period. A field trial was conducted in the cropping seasons in 2016 and 2017 at the Fogera rice research station, Ethiopia. As a function of the onset of rains, rice was sown mid-July in 2016 and early July in 2017. Early sowing in 2017 led to an extended crop duration and significantly lower yields of the short-duration varieties, and to a shortened duration and significantly higher yields of the medium- and long-duration varieties, when compared to late sowing in 2016. Late sowing compromised yield of the medium- and long-duration varieties because of low temperatures during booting stage, which led to high spikelet sterility. Early sowing resulted in low yields of the short-duration varieties, probably due to low solar radiation during the cloudy rainy season, which coincided with the vegetative stage. Therefore, choice of variety should be a function of the variable onset of the rainy season and related sowing date. However, crop models precisely calibrated for potential varieties and the respective environmental conditions could fully support the selection of a suitable variety, depending on the date of sowing, for example with the help of online tools or smartphone applications.     

Is it a hindrance for an invasive aquatic species to spread across scattered habitat patches?

1. Despite their importance for aquatic biodiversity, ponds are among the most vulnerable freshwater habitats. Owing to their isolation in terrestrial environments, ponds are expected to be relatively well protected from biological invasions, but this depends on many factors. 2. The purpose of this study was to examine the influence of a range of variables (water quality, habitat, and landscape attributes) on the colonization of discrete ponds by a widespread aquatic invader, the red swamp crayfish Procambarus clarkii, which can disperse overland. 3. Investigations were conducted in two networks of ponds, each located in close proximity to a large invaded marsh. The two marshes under study differed in the length of time since the crayfish were introduced. 4. The proportions of colonized ponds and crayfish abundances were moderate in both networks, but higher in the network that had been invaded first. In both networks the distance to the marsh was the main predictor of pond colonization, considering similar energy costs to cross aquatic and terrestrial habitats for the recently invaded network, but assuming that dispersal was 25 times costlier across the terrestrial matrix than via streams for the earlier invaded network. Pond characteristics had no influence on crayfish occurrence in either network. Furthermore, predictions of pond invasion were lower for the recently invaded network. 5. The importance of the distance to the marsh indicates that natural dispersal was the main process of pond colonization by crayfish. Findings also suggested that overland dispersal was rare and costly. By contrast, streams were probably significant in facilitating crayfish dispersal. Differences between the two networks might arise from an invasion process still in progress in the recently invaded network. 6. From a management viewpoint, local actions are encouraged to prevent the spread of crayfish via streams. In addition, broader‐scale actions to mitigate other human disturbances would improve the outlook for pond biodiversity.     

Assessing the sublethal impacts of anthropogenic stressors on fish: An energy‐budget approach

Fish are increasingly exposed to anthropogenic stressors from human developments and activities such as agriculture, urbanization, pollution and fishing. Lethal impacts of these stressors have been studied but the potential sublethal impacts, such as behavioural changes or reduced growth and reproduction, have often been overlooked. Unlike mortality, sublethal impacts are broad and difficult to quantify experimentally. As a result, sublethal impacts are often ignored in regulatory frameworks and management decisions. Building on established fish bioenergetic models, we present a general method for using the population consequences of disturbance framework to investigate how stressors influence ecologically relevant life processes of fish. We partition impact into the initial energetic cost of attempts to escape from the stressor, followed by the energetic impacts of any injury or behavioural change, and their consequent effects on life processes. As a case study, we assess the sublethal effects of catch and release angling for the European sea bass (Dicentrachus labrax, Moronidae), a popular target species for recreational fishers. The energy budget model described is not intended to replace existing experimental approaches but does provide a simple way to account for sublethal impacts in assessment of the impact of recreational fisheries and aid development of robust management approaches. There is potential to apply our energy budget approach to investigate a broad range of stressors and cumulative impacts for many fish species while also using individual‐based models to estimate population‐level impacts.     

A proposal for enhanced EU herbage VCU and DUS testing procedures

Herbage production is regarded as having environment-friendly credentials. However, as the ruminant production it supports is facing major challenges on sustainability, environmental footprint and human health concerns, EU herbage cultivar testing must contribute to the solutions. Before new cultivars can be sold in a member state (MS) and gain EU-wide marketing, they must pass official tests to prove they are both novel (distinct, uniform and stable, DUS) with improved value for cultivation and use (VCU). Herbage species present specific challenges, as their allogamy imposes a wide within-cultivar variation that adds complexity to DUS tests and their “value” is only realized in ruminant produce. Current VCU systems measure production, chemical composition and disease/stress tolerances, often on large numbers of candidate cultivars, but prohibitive labour costs and logistics mean that animal intake, ruminant output or environmental benefits cannot be measured directly. Furthermore, some candidate cultivars with proven superior VCU fail DUS even though the non-distinct comparison is with a significantly lower performing registered cultivar. To resolve these problem cases, a “vmDUS” distinctness tool is proposed, which uses molecular markers but conforms to UPOV-declared principles. A short overview of current grassland research shows smart proxy measures of animal value can easily and quickly be adopted into an integrated pan-European (EU-VCU) test network. The proposed EU-VCU scheme will reallocate test resources to conduct these additional tests by placing MS in data sharing collaborations, while retaining their national listing authority. The benefits to all stakeholders from adopting these new testing procedures are considered.     

Correction to: Coupling landscape graph modeling and biological data: a review

Landscape Ecology - In the original publication of the article, the sixth author name has been misspelt. The correct name is given in this Correction. The original article has been corrected.     

Antioxidant Capacity of Beetroot: Traditional vs Novel Approaches

Red beetroot has been ranked among the 10 most potent antioxidant vegetables, although only extraction-based methods have been used to evaluate its total antioxidant capacity. Therefore, the present study aims at comparing the traditional extraction-based method with two more recent approaches (QUENCHER -QUick, Easy, New, CHEap and Reproducible- and GAR -global antioxidant response method), in order to establish their suitability in the case of beetroot. Our results indicate that the total antioxidant capacity of beetroot would be underestimated when using extraction-based procedures, since both QUENCHER and GAR methods resulted in a higher total antioxidant capacity. The effect of a thermal treatment on the total antioxidant capacity of beetroot varies among the methods evaluated and our findings suggest different compounds responsible for the total antioxidant capacity detected in each pre-processing method. Remarkably, the present study demonstrates that the traditional extraction-based method seems useful to screen for (changes in) the “bioavailable” antioxidant potential of the root.     

Development and characterization of a new set of 164 polymorphic EST‐SSR markers for diversity and breeding studies in rubber tree (Hevea brasiliensis Müll. Arg.)

Despite its economic importance and recent genome release, the need for molecular tools for Hevea brasiliensis is high. In the frame of a disease resistance study, EST sequences were retrieved from public database or generated by sequencing SSH libraries. Sequences were trimmed and microsatellite motifs searched using an ad hoc bioinformatic pipeline, and pairs of primers for the amplification of candidate markers were generated. We found a total of 10 499 unigenes from both sources of sequences, and 673 microsatellites motifs were detected using the default parameters of the pipeline. Two hundred sixty‐four primer pairs were tested and 226 (85.6%) successfully amplified. Out of the amplified candidate markers, 164 exhibited polymorphism. Relationships based on dendrograms using simple matching index and diversity statistics based on EST‐SSRs were compared with Genomic SSRs, showing the potentialities of EST‐derived microsatellites for resistance studies but also for population genetics approaches.     

Whitened kernel surface: A fast and reliable method for assessing Fusarium severity on cereal grains by digital picture analysis

Fusarium head blight (FHB) is a cereal disease of major importance responsible for yield losses and mycotoxin contaminations in grains. Here, we introduce a new measurement approach to quantify FHB severity on grains based on the evaluation of the whitened kernel surface (WKS) using digital image analysis. The applicability of WKS was assessed on two bread wheat and one triticale grain sample sets (265 samples). Pearson correlation coefficients between Fusarium‐damaged kernels (FDK) and WKS range from r = 0.77 to r = 0.81 and from r = 0.61 to r = 0.86 for the correlation between deoxynivalenol (DON) content and WKS. This new scoring method facilitates fast and reliable assessment of the resistance to kernel infection and shows significant correlation with mycotoxin content. WKS can be automated and does not suffer from the “human factor” inherent to visual scorings. As a low‐cost and fast approach, this method appears particularly attractive for breeding and genetic analysis of FHB resistance where typically large numbers of experimental lines need to be evaluated, and for which WKS is suggested as an alternative to visual FDK scorings.