Comparative ecologies of domestic and naturalised rainbow trout in northern Lake Huron

Northern Lake Huron (Ontario, Canada) supports the largest concentration of freshwater salmonid cage culture farms in Canada and receives inputs of domestic‐strain rainbow trout (Oncorhynchus mykiss) through escapement. We assessed the potential effects of these domestic fish on the naturalised rainbow trout of this ecosystem by comparing their respective ecologies. Mature adults were sampled from spawning tributaries, primarily in spring, and to a lesser extent in fall. Fish of domestic origin comprised ~80% of rainbow trout sampled from sites near cage culture facilities but <20% of rainbow trout sampled from more distant sites. Domestic adults in spawning condition (gametes free‐flowing) were present in the spawning tributaries in both spring and fall sampling seasons, whereas naturalised fish in spawning condition were only observed in the spring. Domestic adults were younger and smaller (in length), appeared to have shorter lifespan and had a higher male to female ratio compared with their naturalised counterparts. Growth rates (change in length with age) of naturalised and domestic females in the wild were similar, but domestic males grew more slowly than naturalised males. Domestic females also produced smaller eggs than naturalised females. Food web positions (inferred from δ¹³C and δ¹⁵N) of domestic and naturalised fish were very similar but varied more strongly with body size in the former. Domestic‐strain rainbow trout of cage culture origin can survive, grow and attempt to spawn in northern Lake Huron and have the potential to compete for food, mates and spawning habitat with naturalised rainbow trout.     

The role of flow dependency and water availability in fish assemblage homogenization in tributaries of the Chattahoochee River,Alabama, USA

The availability of water is becoming more variable as flow regime alterations intensify both locally and on a global scale. This pattern has been observed in the tributaries of the central Chattahoochee River System as water withdrawal and natural drought have caused flows to diminish. Stream discharge has steadily decreased in the study area by 31% over the last 50 years, and during this time, fish assemblage homogenization has occurred throughout the system. Our primary objective was to assess whether spawning mode and water availability are catalysts for fish assemblage change in tributaries of the Chattahoochee River System. We found that species which prefer or have adapted to low flow conditions (e.g. blacktail shiner Cyprinella venusta, redbreast sunfish Lepomis auritus and blackbanded darter Percina nigrofasciata) are becoming dominant and replacing historically dominant fluvial specialists. When examining short‐term changes between a dry year (2009) and a wet year (2010), some species preferring higher flows such as the highscale shiner Notropis hypsilepis were detected during the wet year, suggesting that the amount of water is important for the presence of these species in upstream reaches where they were historically abundant. Species that can reproduce successfully in low flow conditions are thriving and expanding their native ranges as more habitat becomes suitable. Species that require higher flows for part of their life cycle, however, appear to be declining from upstream areas as water availability continues to decrease, despite temporary recovery from downstream refugia during wet years.     

Estimating Amenity Benefits of Coastal Farmland

This paper investigates differences in non‐market farmland amenity values estimated using distinct methodologies, with a focus on the potential causes and policy implications. The paper compares farmland amenity values generated by a hedonic property value model and a contingent choice model, both estimated from data collected in the Peconic Estuary System of Suffolk County, NY. The analysis demonstrates that a combination of non‐market valuation methodologies can provide policy insights not otherwise available to those relying on any single approach, and illustrates types of information that may be obscured by methodologies used in isolation.     

Hydroxylysyl pyridinoline cross-link concentration affects the textural properties of fresh and smoked Atlantic salmon (Salmo salar L.) flesh

A simple HPLC method is presented to quantify the low concentration of hydroxylysyl pyridinoline (PYD) cross-links in Atlantic salmon (Salmo salar L.) muscle. The method involved the extraction of tissue with NaOH prior to hydrolysis, which greatly reduced the amount of protein to be hydrolyzed and made downstream operations easier and more reproducible. The concentration of PYD was 426 pmol g(-)(1) dry mass muscle in post-rigor muscle stored at 0 degrees C and sampled 3 d after death. Hydroxproline (HYP) concentration was determined following NaOH extraction as a measure of collagen content. In post-rigor samples, the alkaline-insoluble HYP fraction comprised 18.3% of the total HYP. Scanning electron microscopy revealed shrinkage of muscle fibers and a retraction of the connective tissue matrix in smoked salmon. PYD concentration was relatively resistant to processing to the smoked product, decreasing by around 11.7%, as compared to a 22.2% decrease in HYP. There was a positive correlation between PYD concentration and the firmness of post-rigor muscle samples as measured by an instrumental texture analyzer, explaining 25% of the total variation. A weaker but still significant correlation was found between PYD concentration and firmness in the smoked product. There was no relationship between fillet firmness and total collagen concentration, although the correlation with HYP in the alkaline-insoluble fraction was significant at the 6% level (P = 0.057). Our results indicate that only 1-3% of collagen molecules are linked by nonreducible mature cross-links in harvest size farmed Atlantic salmon and that PYD concentration is an important raw material characteristic for flesh quality.     

Hierarchical scheme for LC-MSn identification of chlorogenic acids

The fragmentation behavior of 18 chlorogenic acids that are not substituted at position 1 has been investigated using LC-MS(4) applied to a methanolic coffee bean extract and commercial cider (hard cider). Using LC-MS(3), it is possible to discriminate between each of the three isomers of p-coumaroylquinic acid, caffeoylquinic acid, feruloylquinic acid, and dicaffeoylquinic acid, and a hierarchical key has been prepared to facilitate this process when standards are not available. MS(4) fragmentations further support these assignments, but were not essential in reaching them. The distinctive behavior of 4-acyl and 3-acyl chlorogenic acids compared with the 5-acyl chlorogenic acids is a key factor permitting these assignments. The fragmentation patterns are dependent upon the particular stereochemical relationships between the individual substituents on the quinic acid moiety. Fragmentation is facilitated by 1,2-acyl participation and proceeds through quinic acid conformers in which the relevant substituents transiently adopt a 1,3-syn-diaxial relationship. Selected ion monitoring at m/z 529 clearly indicated the presence in coffee of six caffeoylferuloylquinic acid isomers, whereas previously only two or three had been demonstrated. The hierarchical key permitted specific structures to be assigned to each of the six isomers. These assignments are internally consistent and consistent with the limited data previously available.     

Assessing the compaction susceptibility of South African forestry soils. II. Soil properties affecting compactibility and compressibility

Factors affecting the compaction susceptibility of South African forestry soils were assessed. Two traditional measures of compaction susceptibility were used: maximum bulk density (ρ_mbd) determined by the standard Proctor test, defined compactibility, and the compression index using a simple uni-axial test, defined compressibility. Soils were chosen from a broad range of geological and climatic regions and they varied greatly in texture (8 to 66 g 100 g⁻¹ clay) and organic matter content (0.26 to 5.77 g 100 g⁻¹ organic carbon). Soils showed a wide range in ρ_mbd values, from 1.24 to 2.00 Mg m⁻³, and this reflected the wide range of particle size distributions and organic matter contents of the soils. Very good correlations were achieved between measures of particle size distribution, particularly clay plus silt and both compactibility and compressibility. Both compactibility and compressibility were significantly correlated with loss-on-ignition (L_OI) which is a measure reflecting the combined effects of soil texture and organic matter on soil physical properties. Indices of compaction susceptibility were influenced more by particle size distribution than by organic carbon content. Clear effects of organic carbon on compaction behaviour were only evident for soils with low clay contents (< 25 g 100 g⁻¹. No clear relationship between compactibility and compressibility was found. Compactibility generally increased with decreasing clay plus silt content, whereas compressibility increased up to about 70 g 100 g⁻¹ clay plus silt before decreasing again. It is difficult to define compaction susceptibility solely in terms of indices of compactibility or compressibility particularly as there is no clear relationship between these two properties. A classification system for compaction risk assessment is presented, based on the relationship between compactibility (ρ_mbd) and L_OI, and between clay plus silt content and compressibility.     

Soil organic matter, effects on soils and crops

Abstract. Manurial treatments and cropping history have remained unchanged for many years in classical and long-term experiments at Rothamsted and Woburn, in some cases for more than 100 years. Soil samples taken periodically have been analysed to follow changes in organic carbon content with time and treatment. Data presented here clearly show effects of carbon input and soil texture on equilibrium organic matter content.
Until recently increasing amounts of soil organic matter had little effect on yields of arable crops especially if fertilizer nitrogen dressings were chosen correctly. However the yield potential of many crops has increased and various agronomic inputs have become available to achieve that potential. Yields of many crops are now larger on soils with extra organic matter both on the sandy loam at Woburn and the silty clay loam at Rothamsted. Some of the effect appears to be related to extra water holding capacity, some to availability of nitrogen in ways which cannot be mimicked by dressings of fertilizer N, and some to improved soil physical properties. Responses to fertilizer N have been larger on soils with more organic matter.     

Variation of juvenile Atlantic salmon (Salmo salar) body composition along sedimentary links*

Johnston P, Bergeron NE. Variation of juvenile Atlantic salmon (Salmo salar) body composition along sedimentary links.
Ecology of Freshwater Fish 2010: 19: 187–196. © 2010 John Wiley & Sons A/S Abstract – The objective of this study was to determine the proximate body composition of juvenile Atlantic salmon along the sequence of aquatic habitat types created by longitudinal changes in the riverbed substrate of two rivers (i.e., sedimentary links units). Interesting trends in the body composition were observed but our initial hypothesis, that fish of the upstream sections have higher energy content, was nevertheless not verified. No common longitudinal pattern was detected in the body composition (water, lipid, energy density) along the studied rivers. Trends in the body constituents were different between age‐classes and rivers, whereas they were highly variable within‐ and among‐samples. There was however a common trend in the pattern of variations, with the coefficient of variations increasing in the downstream direction for almost all constituents, age‐classes and rivers. Potential abiotic and biotic factors that might have contributed to these observations are discussed.