Comparative Expression Analysis of Gametogenesis‐Associated Genes in Foetal and Adult Bubaline (Bubalus bubalis) Ovaries and Testes

This study was conducted to identify and analyse the expression of gametogenesis‐associated genes and proteins in foetal and adult buffalo gonads of both the sexes. Relative quantification of the genes was determined by qPCR and Western blotting. Immunohistochemistry was also performed for various gametogenesis‐associated proteins in foetal and adult gonads of both the sexes. We observed significantly (p < 0.05) increased expression of primordial germ cell‐specific, meiotic as well as genes associated with oocyte maturation and development in foetal ovaries as compared to the adult ones. However, significantly (p < 0.05) increased expression of proteins associated with oocyte maturation like GDF9 and ZP4 was found in adult ovaries, indicating temporal regulation of mRNA translation during oogenesis. Meiotic genes showed significantly (p < 0.05) increased expression in adult testes as compared to foetal testes and ovaries, indicating onset of meiosis at a later stage in spermatogenesis. In general, the expression of primordial germ cell‐associated as well as meiotic genes was higher in adult testes, indicating the increased biological activity in the organ. Immunohistochemistry revealed localized expression of gametogenesis‐associated proteins in ovarian follicles and seminiferous tubules of testes, while the surrounding somatic tissues were devoid of these proteins. The study gives an understanding of the sequential and temporal events of gene expression as well as mRNA translation during male and female gametogenesis. It could also be concluded that follicles and seminiferous tubules are the functional units of the female and male gonads, respectively, and their function could be enhanced by appropriate chemical and genetic intervention of the somatic tissue immediately surrounding them. This assumes importance in the context that buffalo attains sexual maturity at an older age of 2–3 years and have smaller ovaries with lesser number of primordial follicles in comparison with cattle, which is suggested to be the main reason of their poor breeding performance.     

Recent advances in molecular genetics of forest trees

The use of molecular markers has greatly enhanced our understanding of the genome structure of forest trees. Conifers, in particular, have a relatively large genome, containing a very high proportion of repeated DNA, consisting of tandemly repetitive and dispersed repetitive DNA sequences. The nature of highly conserved tandemly repetitive rRNA genes has been investigated in a number of tree species, and their sites mapped on specific chromosomes by fluorescent in situ hybridization (FISH). Different families of retrotransposons (IFG, and TPE1) have been isolated and characterized from the dispersed repetitive DNA of pines. Genome maps have been constructed in a number of forest tree genera: Pinus, Picea, Pseudotsuga, Cryptomeria, Taxus, Populus, and Eucalyptus. EST databases have been established from cDNA clones of pines and poplars. The structure and maternal or paternal modes of inheritance of organelle genomes have been investigated in forest trees. Comparative mapping in conifers has shown that gene families are conserved across genera. Due to lack of polyploidy in conifers, the evolution of this group of trees may have occurred primarily by duplication and dispersal of genes, probably by retrotranspositions, to form complex gene families. The evolution of angiosperm tree species has presumably involved both gene duplication as well as genome duplication (polyploidy). Application of genetic engineering has shown that genes from phylogenetically unrelated organisms can be introduced and expressed in trees, thus offering prospects of genetic improvement of forest trees. This revised version was published online in August 2006 with corrections to the Cover Date.     

Tea (Camellia sinensis) clones with shorter periods of winter dormancy exhibit lower accumulation of reactive oxygen species

Tea (Camellia sinensis (L.) O. Kuntze) is a perennial crop grown throughout the world. During winter, tea undergoes a dormancy period when growth of apical buds almost ceases, severely reducing the commercial yield of tea. Low temperatures prevail during the period of winter dormancy, which alone or in combination with high solar irradiance have the potential to induce oxidative stress in plants. We studied six tea clones under field conditions to test whether a relationship exists between oxidative stress and winter dormancy. Data on the behavior of the enzymatic antioxidative system was collected for all clones during different phases of winter dormancy. There was a strong positive correlation among clones between accumulation of reactive oxygen species (ROS) and the length of the dormancy period. Clones having shorter dormancy periods exhibited higher induction of antioxidative enzymes. Results suggest that efficient scavenging of ROS is a desirable feature in tea because it leads to lower accumulations of ROS during winter months and is associated with reduced winter dormancy.     

Evaluation of the RZWQM-CERES-Maize hybrid model for maize production

The root zone water quality model (RZWQM) was developed primarily for water quality research with a generic plant growth module primarily serving as a sink for plant nitrogen and water uptake. In this study, we coupled the CERES-Maize Version 3.5 crop growth model with RZWQM to provide RZWQM users with the option for selecting a more comprehensive plant growth model. In the hybrid model, RZWQM supplied CERES with daily soil water and nitrogen contents, soil temperature, and potential evapotranspiration, in addition to daily weather data. CERES-Maize supplied RZWQM with daily water and nitrogen uptake, and other plant growth variables (e.g., root distribution and leaf area index). The RZWQM-CERES hybrid model was evaluated with two well-documented experimental datasets distributed with DSSAT (Decision Support System for Agrotechnology Transfer) Version 3.5, which had various nitrogen and irrigation treatments. Simulation results were compared to the original DSSAT-CERES-Maize model. Both models used the same plant cultivar coefficients and the same soil parameters as distributed with DSSAT Version 3.5. The hybrid model provided similar maize prediction in terms of yield, biomass and leaf area index, as the DSSAT-CERES model when the same soil and crop parameters were used. No overall differences were found between the two models based on the paired t test, suggesting successful coupling of the two models. The hybrid model offers RZWQM users access to a rigorous new plant growth model and provides CERES-Maize users with a tool to address soil and water quality issues under different cropping systems.     

Identification of double/twin bolled and bicolor unit ‘cluster’ in <Emphasis Type="Italic">Gossypium hirsutum</Emphasis> L. cotton

Cultivated tetraploid Gossypium hirsutum L. (Malvaceae) cotton has been characterized as having one flower at a primordia. In a strain (CSH-13) of Gossypium hirsutum cotton, four plants out of 103 had two to three double bolls or twin bolls/plant during 2003–2004 crop season at CICR regional station, Sirsa, Haryana, India. Progeny evaluation in 2004 and 2005 crop seasons indicated that plants raised from seeds harvested from double bolls/twin bolls produced plants bearing double bolls only and plant progeny raised from the seed of single bolls from these mutant plants produced two to three double bolls per plant similar to the parent. Progeny testing revealed that double boll formation is the result of spontaneous mutation and environment does not influence its expression. The mutant is early in maturity by 10–15 days, naked seeded and possesses comparable agronomic characters with normal plants. Another spontaneous mutant of Gossypium hirsutum having more than three appendages originating from primordia.: four bolls one leaf, three bolls one leaf, two bolls two leaves, one boll three leaves were obtained from the population of CISV-13 strain in crop season 2003. These appendage groups have been described as bicolor unit by Clemens Bayer, [Zur Infloreszenzmorphologie der Malvales. Dissertations Botany 212 (1994)] and cluster mutant by Russell and Luther [J Cott Sci 6 (2002) 115]. One to three bolls in a cluster or bicolor unit were observed without formation of seeds and lint. About one-third of the total bolls on the mutant plant were of this type. In progeny testing during 2004 and 2005 crop seasons, this mutant produced plants exclusively with more than three appendages revealing that plants identified in 2003 were due to spontaneous mutation. This mutant was also early and naked seeded. Many of the other characters of the mutant plants were comparable with the wild type plants of the strain. Both the mutants were observed having economic impact due to their better yielding ability as compare to respective parents.     

Simulating management effects on crop production, tile drainage, and water quality using RZWQM-DSSAT

The objective of this study was to explore if more crop-specific plant growth modules can improve simulations of crop yields, and N in tile flow under different management practices compared with a generic plant growth module. We calibrated and evaluated the Root Zone Water Quality Model (RZWQM) with the Decision Support for Agrotechnology Transfer (DSSAT v3.5) plant growth modules (RZWQM-DSSAT) for simulating tillage (NT — no till, RT — ridge till, CP — chisel plow, and MP — moldboard plow), crop rotation {CC — continuous corn, and CS — corn (Zea mays L.)-soybean [Glycine max (L.) Merr.]}, and nitrogen (N) (SA — single application at preplant, and LSNT — late spring soil N test based application) and manure (SM — fall injected swine manure) management effects on crop production and water quality. Data from 1978 to 2003 from a water quality experiment near Nashua (Nashua experiments), Iowa, USA, were used. The model was calibrated using data from one treatment plot and validated for the rest of the plots. Simulated management effects on annual N loading in tile flow were agreeable with measured effects in 85%, 99%, 88%, and 78% of the cases for tillage, crop rotation (CS vs. CC), N application timing (SA vs. LSNT), and swine manure applications (SM vs. SA), respectively. On average, the LSNT plots were simulated to have 359 kg ha^− 1 higher corn yield compared to SA, when the observed increase was 812 kg ha^− 1. Grain yield simulations were not sensitive to differences between RT and NT, between SM and SA treatments, and between CS and CC. We conclude that considering the uncertainties of basic input data, processes in the field, and lack of site specific weather data, the results obtained with this RZWQM-DSSAT hybrid model were not much better than the results obtained earlier with the generic crop growth module.     

Comparison of modeling approaches to quantify residue architecture effects on soil temperature and water

RZ-SHAW is a hybrid model, comprised of modules from the Simultaneous Heat and Water (SHAW) model integrated into the Root Zone Water Quality Model (RZWQM) that allows more detailed simulation of different residue types and architectures that affect heat and water transfer at the soil surface. RZ-SHAW allows different methods of surface energy flux evaluation to be used: (1) the SHAW module, where evapotranspiration (ET) and soil heat flux are computed in concert with a detailed surface energy balance; (2) the Shuttleworth–Wallace (S–W) module for ET in which soil surface temperature is assumed equal air temperature; and (3) the PENFLUX module, which uses a Penman transformation for a soil slab under incomplete residue cover. The objective of this study was to compare the predictive accuracy of the three RZ-SHAW modules to simulate effects of residue architecture on net radiation, soil temperature, and water dynamics near the soil surface. The model was tested in Akron, Colorado in a wheat residue-covered (both standing and flat) no-till (NT) plot, and a reduced till (RT) plot where wheat residue was incorporated into the soil. Temperature difference between the soil surface and ambient air frequently exceeded 17 °C under RT and NT conditions, invalidating the isothermal assumption employed in the S–W module. The S–W module overestimated net radiation (R_n) by an average of 69 Wm⁻² and underestimated the 3-cm soil temperature (T_s3) by 2.7 °C for the RT plot, attributed to consequences of the isothermal assumption. Both SHAW and PENFLUX modules overestimated midday T_s3 for RT conditions but underestimated T_s3 for NT conditions. Better performances of the SHAW and PENFLUX surface energy evaluations are to be expected as both approaches are more detailed and consider a more discretized domain than the S–W module. PENFLUX simulated net radiation slightly better than the SHAW module for both plots, while T_s3 was simulated the best by SHAW, with a mean bias error of +0.1 °C for NT and +2.7 °C for RT. Simulation results for soil water content in the surface 30 cm (θ_v30) were mixed. The NT conditions were simulated best by SHAW, with mean bias error for θ_v30 within 0.006 m³ m⁻³; RT conditions were simulated best by the PENFLUX module, which was within 0.010 m³ m⁻³.     

Podophyllum lignans array of Podophyllum hexandrum Royle populations from semi-desert alpine region of Zanskar valley in Himalayas

Podophyllum hexandrum Royle (Syn. P. emodi Wale) a perennial rhizomatous herb found in alpine region distributed in the entire range of Himalayas from Ladakh to Sikkim at an altitude of 3000-4200 m asl is an preferred commercial source of Podophyllum lignans. It contains three times more Podophyllotoxin than the American species, Podophyllum peltatum. The present study was aimed to investigate variation of Podophyllum lignans contents based on six marker compounds viz. Podophyllotoxin; Deoxypodophyllotoxin; Picropodophyllotoxin; Podophyllotoxin β-d-glucopyanoside; Isopicropodophyllone; 4′-Demethyldeoxypodophyllotoxin, β-d-lucopyanoside, in P. hexandrum population growing at three locations. Further, ontogenetic and morphogenetic variations of Podophyllum lignan contents were studied to investigate dynamics of accumulation of these compounds. Representative collections from three locations viz., Panikhar, Padam and Tangoli located in Trans Himalayan semi-desert region of Zanskar valley were harvested at three stages (dormancy, active growth and maturity). Plants were dissected into root, rhizome and rhizome-buds, dried separately and assayed for Podophyllum lignan contents by high performance liquid chromatography.     

Development of Gossypium hirsutum lines with cytoplasmic bollworm tolerance from Gossypium arboreum and Gossypium tomentosum

American cotton [Gossypium hirsutum (L.)] grown in India belongs to the race Latifolium. It is prone to bollworms [Helicoverpa armigera (Hubner), Erias vitella (Fabricius), Pectinophora gossypiella (Saunders)] infestation which causes considerable crop loss. Two breeding lines ‘Bikaneri (BN)‐arboreum (ARB)‐16’ and ‘BN‐tomentosum (TOM)‐277’ are cytoplasmic diverse genetic stocks. They were developed by crossing experimental lines ‘Delta Branch Experiment Station (DES)‐ARB16’ and ‘DES‐TOM277’ (non‐recurrent parents) with G. hirsutum‘BN’ (recurrent parent). Compared with BN these stocks possessed higher amount of gossypol, flavonol and phenol contents in leaves, stem and square. Plants were tolerant to bollworms and inherited comparable agronomic properties (yield, boll weight, plant height, number of monopods and sympods and fibre quality). Cotton breeders can use these lines for breeding cotton resistant to bollworm.     

Performance of upland coloured cotton germplasm lines in line × tester crosses

Anthracnose is a serious disease affecting dry bean production especially in the cool highland areas worldwide. The objective of this research was to study the inheritance of anthracnose resistance in market-class dry beans. A complete diallel set of crosses was generated from nine diverse parents comprising six resistant and three susceptible to anthracnose. The F₁ and F₂ crosses and parents were artificially inoculated with Colletotriclum lindenumthianum Race-767 in a growth room. There was significant variation for anthracnose resistance among genotypes. General combining ability (GCA) and specific combining ability effects were significant for resistance, indicating importance of both additive and non-additive effects, respectively. Preponderance of GCA effects (66%) suggested that additive effects were more important than non-additive effects (24%), which were also reflected by high heritability estimates (70%), and suggested that simple selection or backcrossing would be useful for improving the resistance in market class varieties. The study was not conclusive on whether epistatic gene action played a major role, but if available it might have biased the dominance gene effects. Reciprocal effects (10%) were not significant (P > 0.05), suggesting that cytoplasmic genes did not play a major role in modifying anthracnose resistance. Parental lines G2333, AB136, NAT002, and NAT003 showed highly negative GCA effects qualifying them as suitable parents for transferring resistance genes to their progenies. A few major genes, 1–3, displaying partial dominance conditioned anthracnose resistance, suggesting a possibility of using marker-assisted selection to improve anthracnose resistance in market-class dry beans.