Molecular simulations probing Kushecarpin A as a new lipoxygenase inhibitor

Zizyphus oxyphylla Edgew is used in Pakistan as a folk medicinal remedy for inflammatory conditions, pains especially rheumatic pain, fevers, allergy and diabetes. The aim of the current study was to scientifically validate the folk use of Z. oxyphylla Edgew by using the isolated compound in vitro and in vivo levels. Kushecarpin A was isolated from ethyl acetate fraction of the plant crude extract. Molecular docking simulations predicted Kushecarpin A as a potential new lipoxygenase (LOX) inhibitor. Kushecarpin A showed significant lipoxygenase inhibition (IC50: 7.2 ± 0.02 μM) thus validated computational prediction. It also exhibited significant and highly significant inhibition (p < 0.05 and p < 0.01) of carrageenan-induced hind paw oedema at the doses of 5, 10 and 20 mg/kg. Kushecarpin A seems to be a potentially new anti-inflammatory compound responsible for anti-inflammatory activities of Z. oxyphylla Edgew. In vitro and in vivo anti-inflammatory inflammatory activities were found in good agreement with the folk medicinal use of Z. oxyphylla Edgew in inflammatory disorders.     

Molecular simulations of Taxawallin I inside classical taxol binding site of β-tubulin

A new taxoid Taxawallin I (1) along with two known taxoids (2-3) were isolated from methanolic bark extract of Taxus wallichiana Zucc. Structural characterization was confirmed by mass and NMR spectral techniques. Taxawallin I exhibited significant in-vitro anticancer activity against HepG2, A498, NCI-H226 and MDR 2780AD cancer lines. Tubulin binding assay was performed to assess its tubulin binding activity. Molecular docking analysis was performed to study the potential binding mode inside the taxol binding site of β-tubulin.     

Differences Among Rice Cultivars in their Adaptation to Low Ionic Strength Solution with Toxic Level of Aluminum that Mimics Tropical Acid Soil Conditions

Nutrient deficiencies are often an additional growth-limiting factor in tropical acid soils. Considering the potential interactions between Al stress and low-nutrient stress, differences among rice cultivars for Al tolerance, low-nutrient tolerance, and combined stress tolerance were investigated. The main objective of this study was to identify the predominant growth-limiting factor in tropical acid soils. Tolerance to low nutrient stress and combined stress did not show any relationship with aluminum (Al) tolerance indicating that these stress factors act independently. Al-tolerant cv. Rikuu-132 was tolerant to combined stress. Conversely, highly Al-sensitive cv. BR34 was most tolerant to combined and low nutrient stress. Combined stress tolerance of shoot was positively correlated with calcium (Ca) content of shoot. The results indicate that Al tolerance alone is not adequate for superior performance on most acid soils. Tolerance to combined stress factors would be needed to improve productivity of rice on low fertility acid soils.     

First detection and molecular characterization of avian polyomavirus in young parrots in Pakistan

Veterinary Research Communications - Avian polyomavirus (APV) infection, also called as budgerigar fledgling disease (BFD) causes various health problems in many psittacine species which may cause...     

Soya-lecithin in extender improves the freezability and fertility of buffalo (Bubalus bubalis) bull spermatozoa

Egg yolk is routinely used as a cryoprotectant in semen extenders. However, it may contain cryoprotective antagonists, and there are hygienic risks associated with its use. Proteins of plant origin, like soya-lecithin, lack these hazards. The aim of this study was to use soya-lecithin as a cryoprotectant in extender and to investigate its effects on in vitro quality and in vivo fertility of buffalo semen. Semen from three buffalo bulls was frozen in tris-citric extender containing 5.0%, 10% or 15% soya-lecithin or 20% egg yolk. Sperm motility, plasma membrane integrity and viability were assessed post-dilution, pre-freezing and post-thaw. In Post-dilution and pre-freezing, the values for motility, plasma membrane integrity and viability remained higher (p ≤ 0.05) in extenders containing 10% soya-lecithin and control compared with extender containing 5% and 15% soya-lecithin. However, motility, plasma membrane integrity and viability were higher (p < 0.05) in extender containing 10% soya-lecithin compared with control and extenders containing 5% and 15% soya-lecithin. Semen from two buffalo bulls was frozen in tris-citric extender containing either 10% soya-lecithin or 20% egg yolk. Higher (p < 0.05) fertility rate was recorded in buffaloes inseminated with semen containing 10% soya-lecithin (56%) compared with 20% egg yolk (41.5%). The results suggest that 10% soya-lecithin in extender improves the freezability and fertility of buffalo bull spermatozoa and can be used as an alternate to egg yolk in cryopreservation of buffalo semen.     

Economics and Employment Generation of Bamboo-Based Enterprises: A Case Study from Eastern Bangladesh

An exploratory survey was carried out to assess economics and employment generation of the trade of bamboo and bamboo-based secondary products in the eastern Bangladesh, to obtain reliable information about their status, socio-economic significance, production and marketing. The study was undertaken over 30 bamboo-based enterprises in a suburban market of eastern Bangladesh, to investigate regional product details, economic profitability and employment opportunities. The sample entrepreneurs, corresponding to about 25% of the bamboo enterprise population were interviewed using a semi-structured questionnaire. About 202 full and part-time workers were employed in the factories, under categories of artisan (who manufactured secondary products). The average number of worker’s in the large, medium and small factories were 9 (artisan 40%), 6.45 (artisan 35%) and 5 (artisan 25%) respectively. The study revealed that there was always a satisfied demand of skilled artisans. Most of the workers were relatively newly employed (not more than 5 years). The daily wage rate varied between 70 and 130 Tk. ($US 1 equals approximately 70 Bangladeshi Taka (Tk.), as at December 2008). Bambusa balcooa was the most utilized species (39.96%) in terms of monetary value. The price of a single B. balcooa culm in the local market was Tk. 160–210. Nine sizes of articles under seven bamboo categories were identified, these being bera (36″ × 120″ and 72″ × 96″), bookshelf (36″ × 24″), chaluni (12″ × 12″), chatai (48″ × 60″ and 36″ × 48″), jhuri, rickshaw hood and tukri. Net average profit per article was the highest for rickshaw hoods (Tk. 400 at the retailer stage). The total expected annual income for an enterprises from all articles types sold was estimated to be Tk. 85,800. Three distinct marketing channels were identified for selling bamboo and value-added secondary products. The study also generated policy implications for effective management of bamboo-based enterprises.     

Field determination of soil hydraulic properties for simulation of the optimum watertable regime

A field experiment to evaluate accurate cost and time efficient methodologies for determining soil hydraulic properties was done at the NIAB Research Station at Faisalabad, Pakistan. The experiment was performed on a freely draining loamy soil. This soil type is representative of 75% of the topsoil in a tile drainage area known as the Fourth Drainage Project. Redistribution of water was monitored at five locations, for seven depths, following a steady state infiltration for prolonged time. The data were analyzed with Darcian flow analysis, three simplified methods, and two parameter optimization programs to calculate unsaturated hydraulic conductivity. The Darcian flow analysis was used as a reference against which the simplified methods were compared. Two simplified methods produced satisfactory results with less effort. The drawback is that the simplified methods alone do not provide enough information for use in simulation models. The advantage of the two optimization programs — SFIT and RETC — is that they are based on a continuous function which describes complete h() and K() curves. This is a requirement for computer simulation of salt and water movement in the unsaturated soil. The results of the optimizations were evaluated by their correspondence to field measurements and to laboratory measurements and by their ability to simulate soil water flow. Both programs fit the observed field data well, but only the SFIT optimized parameters were suitable for soil water flow simulations.Abbreviations IWASRI International Waterlogging and Salinity Research Institute - NRAP Netherlands Research Assistance Project - NIAB Nuclear Institute for Agriculture and Biology - SSP Soil Survey of Pakistan Revised paper from Field determination of soil hydraulic properties presented in ICID, CIID IDW5, Lahore, Pakistan (1–55 — 1–64).     

Correlation among microbial biomass s,soil properties,and other biomass nutrients

The soil physicochemical characteristics and amounts of microbial biomass C, N, and S in 19 soils (10 grassland, 2 forest, and 7 arable soils) were investigated to clarify the S status in granitic regosols in Japan, in order to determine the relationships between biomass S and other soil characteristics and to estimate approximately the annual Sand N flux through the microbial biomass. Across the sites, the amount of biomass C ranged from 46 to 1,054, biomass N from 6 to 158, and biomass S from 0.81 to 13.44 mg kg_-1 soil with mean values of 438.8, 85.8, and 6.15 mg kg_-1 soil, respectively. Microbial biomass Nand S accounted for 3.4–7.7% and 1.1–4.0% of soil total Nand S, respectively. The biomass C: N, C : S, and N : S ratios varied considerably across the sites and ranged from 3.0–10.4, 32.5–87.7, and 5.0–18.8, respectively. Microbial biomass S was linearly related to biomass C and biomass N. The regression accounted for 96.6% for biomass C and 92.9% for biomass N of the variance in the data. The amounts of biomass C, N, and S were positively correlated with a number of soil properties, particularly with the contents of organic C, total N, SO₄-S, and electrical conductivity and among themselves. The soil properties, in various linear combinations showed a variability of 84–97% in the biomass nutrients. Stepwise multiple regression indicated that biomass C, N, and S were also dependent on SO₄-S as a second factor of significance which could limit microbial growth under the conditions prevailing at the study sites. Annual flux of Nand S was estimated through the biomass using the turnover rates of 0.67 for Nand 0.70 for S to be approximately 129 kg Nand 9.7 kg S ha^-1 y^-l, respectively, and was almost two times higher in grassland than arable soils.