SnToxA,SnTox1, and SnTox3 originated in Parastagonospora nodorum in the Fertile Crescent

The centre of origin of the globally distributed wheat pathogen Parastagonospora nodorum has remained uncertain because only a small number of isolates from the Fertile Crescent were included in earlier population genetic and phylogeographic studies. We isolated and genetically analysed 193 P. nodorum strains from three naturally infected wheat fields distributed across Iran using 11 neutral microsatellite loci. Compared to previous studies that included populations from North America, Europe, Africa, Australia, and China, the populations from Iran had the highest genetic diversity globally and also exhibited greater population structure over smaller spatial scales, patterns typically associated with the centre of origin of a species. Genes encoding the necrotrophic effectors SnToxA, SnTox1, and SnTox3 were found at a high frequency in the Iranian population. By sequencing 96 randomly chosen Iranian strains, we detected new alleles for all three effector genes. Analysis of allele diversity showed that all three effector genes had higher diversity in Iran than in any population included in previous studies, with Iran acting as a hub for the effector diversity that was found in other global populations. Taken together, these findings support the hypothesis that P. nodorum originated either within or nearby the Fertile Crescent with a genome that already encoded all three necrotrophic effectors during its emergence as a pathogen on wheat. Our findings also suggest that P. nodorum was the original source of the ToxA genes discovered in the wheat pathogens Phaeosphaeria avenaria f. sp. tritici 1, Pyrenophora tritici-repentis, and Bipolaris sorokiniana.     

Characterizing Spatial Variability of Soil Textural Fractions and Fractal Parameters Derived from Particle Size Distributions

Soil particle size distribution (PSD) is a fundamental physical property affecting other soil properties. Characterizing spatial variability of soil texture is very important in environmental research. The objectives of this work were: 1) to partition PSD of 75 soil samples, collected from a flat field in the University of Guilan, Iran, into two scaling domains using a piecewise fractal model to evaluate the relationships between fractal dimensions of scaling domains and soil clay, silt, and sand fractions and 2) to assess the potential of fractal parameters as an index used in a geostatistical approach reflecting the spatial variability of soil texture. Features of PSD of soil samples were studied using fractal geometry, and geostatistical techniques were used to characterize the spatial variability of fractal and soil textural parameters. There were two scaling domains for the PSD of soil samples. The fractal dimensions of these two scaling domains (D₁ and D₂) were then used to characterize different ranges of soil particle sizes and their relationships to the soil textural parameters. There was a positive correlation between D₁ and clay content (R² = 0.924), a negative correlation between D₁ and silt content (R² = 0.801), and a negative correlation between D₂ and sand content (R² = 0.913). The geometric mean diameter of soil particles had a negative correlation with D₁ (R² = 0.569) and D₂ (R² = 0.682). Semivariograms of fractal dimensions and soil textural parameters were calculated and the maps of spatial variation of D₁ and D₂ and soil PSD parameters were provided using ordinary kriging. The results showed that there were also spatial correlations between D₁ and D₂ and particle size fractions. According to the semivariogram models and validation parameters, the fractal parameters had powerful spatial structure and could better describe the spatial variability of soil texture.     

Sources and Ecological Risks of Heavy Metals in Soils Under Different Land Uses in Bangladesh

Soil heavy metal pollution, influenced by both natural and anthropogenic factors, significantly reduces environmental quality. In this study, Cr, Ni, Cu, As, Cd, and Pb in eight different land-use soils from Patuakhali District in Bangladesh were assessed. Concentrations of Cr, Ni, Cu, As, Cd, and Pb in soils were 1-87, 5-271, 4-181, 0-80, 0.2-24.0, and 5-276 mg kg^-1, respectively, measured using an inductively coupled plasma-mass spectrometer. The enrichment factor, pollution load index (PLI), and contamination factor (C_fⁱ) of metal i were used to assess the ecological risk posed by metals in soils. The PLI ranged from 0.78 to 2.66, indicating baseline levels to progressive deterioration of soil due to metal contamination. However, C_fⁱ of Cd ranged from 1.8 to 12.0, which showed that the studied soils were strongly impacted by Cd. Considering the severity of the potential ecological risk of a single metal, the descending order was Cd > As > Pb > Cu > Ni > Cr. Soils under all land uses showed moderate to very high potential ecological risk.     

Phosphorus fractions and dynamics as affected by land-use changes in the Central Mexican highlands

Land-use change from forest to agriculture in the volcanic ash-derived soils of Mexico has increased over recent decades. It is likely that land uses and management practices, particularly fertilizer use have affected phosphorus (P) distribution and availability. The objective of this study was to evaluate the effects of land-use types (native forest and maize mono-cropping), and the related P addition, on the forms and distribution of soil P and their isotopic exchangeability. An Andisol, sampled from a cropping site, along with the contiguous area under native forest was treated with ³²P-labelled potassium phosphate (KH₂³²PO₄). The soil samples were extracted after incubation times of 7, 21, 35 and 49 days. Phosphorus content and ³²P recovery in fractions sequentially extracted were assessed for each incubation time. Total soil P was dominated by inorganic fractions (79 to 86%) in both land-use types. Resin-Pi, bicarbonate extractable inorganic P (Bic-Pi) and sodium hydroxide extractable inorganic P (NaOH_0.1-Pi) were all raised with P addition. However, the proportion of organic P fraction was reduced under cropped soil. The recovery of ³²P in soils with P addition indicates that resin-Pi, Bic-Pi and NaOH_0.1-Pi comprised nearly all the exchangeable P. In native soils with no P addition, more than 19% of the ³²P was recovered in Bic-Po and NaOH_0.1-Po forms. This finding indicates that organic P cycling is crucial when soil Pi reserves are presented in an inadequate amount. Ecologically based management has to be designed for replenishment and succeeding maintenance of soil organic P compounds to increase sustainable agricultural production.     

Wide hybridization and introgression breeding in safflower: Effectiveness of different selection methods

Possibility of using interspecific hybridization to increase genetic diversity of drought tolerance in safflower (Carthamus tinctorius L.) and effectiveness of different selection methods is poorly understood. The main objectives of this study were to evaluate the effectiveness of (a) interspecific hybridization to expand genetic diversity in safflower for agronomic traits and drought tolerance in advance generations and (b) different selection methods (direct vs. indirect) for improving seed yield. Interspecific hybridizations were performed between species of C. tinctorius × C. palaestinus (TP), C. palaestinus × C. oxyacantha (PO) and C. tinctorius × C. oxyacantha (TO). Based on the field screening of genotypes in F3 generation, four groups of selected genotypes (derived from combination of direct and indirect selection under both drought and normal environments along with selection based on drought tolerance index (STI)) were evaluated in F4 and F5 generations. Indirect selection for seed yield was significantly more efficient than direct selection. Selection in stress environment resulted to more efficiency than selection in normal environment. No significant difference was observed between direct selection and selection based on STI. The result showed that TP was the best population to combine high seed yield and drought tolerance in safflower.     

Correlation between C-reactive protein level,immunology, and hematology of a <Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis> infected with <Emphasis Type="Italic">Lactococcus garvieae</Emphasis>

The aim of this experiment was to evaluate the symptoms, variation, and correlation of hematological factors and some parameters of the innate immune response of the infected rainbow trout (Oncorhynchus mykiss) fish with Lactococcus garvieae bacteria. A total of 270 fish were divided into three groups including infected fish with a high and low concentration of L. garvieae and a control group without infection. The blood and tissue (brain, head, kidney, and spleen) samples were collected from each group (n?=?6 fish) at 0, 3, 14, and 21 days after treatment. The most observed symptoms during infection were lethargy, exophthalmia, and ascites. The mortality rates for the high and low dose-infected fish were defined as 60 and 25%, respectively. The infected groups had significantly (p?<?0.05) higher activity of serum lysozyme, myeloperoxidase, classical and alternative pathways of complement, serum bactericidal effects, and the specific antibody titer. Also, a significant (p?<?0.05) lower hematocrit and hemoglobin levels and higher white blood cell numbers were observed in the infected groups. A significant correlation was observed between the CRP levels and some of the hematological and immunological indices as bactericidal effects, classical complement pathways, lysozyme activity myeloperoxidase activity, white blood cell numbers, and hematocrit levels. The clinical symptoms, immune responses, and hematological indices variation among L. garvieae-infected fish are dependent on the duration and bacterial dose of the infection.     

Evaluation of bermuda and paspalum grass types for urban landscapes under saline water irrigation

In the arid regions, turfgrass cover is an integral part of landscape to protect the soil from erosion, enhance the aesthetic value, and improve the microclimate. The salinity and the scarcity of fresh water of the arid region are the major challenging factors in turfgrass production. Therefore, the need for salt tolerant turfgrass with functional quality is necessary to improve the turf performance. The detrimental effects of salinity include growth suppression, and lowered osmotic potential ultimately leading to firing of the leaf blades. In this context, the study was undertaken to determine the relative salt tolerance and growth response of turfgrass genotypes in order to recommend turfgrass cultivars that can tolerate high salinity irrigation and maintain excellent visual and functional qualities under United Arab Emirates (UAE) condition. The paspalum cultivars maintained the highest succulence percentage compared to the bermudagrass cultivars under enhanced salinity levels. The shoots count, fresh weight (FW), and dry weight (DW) were found highest in paspalum types. The chlorophyll a, chlorophyll b and the total chlorophyll content was found higher in bermuda grass types under high salinity levels. The bermudagrass cultivars showed significantly higher carotenoids, anthocyanins and proline compared to the paspalum types under salt stress condition. In the case of princess 77 and Yukon, an inherently high amount of proline was recorded which confirmed an increase up to 10,000 ppm and drastically declined beyond this concentration. Sea Dwarf paspalum and Sea Isle 2000 maintained uniformity in the proline level at all levels of salinity without significant variation. These findings point to the fact that both paspalum and bermuda types exhibited varied responses to different physiological and biochemical parameters under the saline conditions. Paspalum types have an edge over the bermudagrass in terms of shoot density, which is a potential factor in determining the high-quality turfs. Bermudagrass types can be applied in lower salinity conditions based on the responses as evidenced from the present results.     

Effect of different permeable and non-permeable cryoprotectants on the hatching rate of rainbow trout (<Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis>) embryos

The purpose of the present study was to investigate the toxicity of cryoprotectants on the hatching rate of rainbow trout (Oncorhynchus mykiss) embryos. Epiboly and first eye pigmentation stage embryos were immersed in six permeable cryoprotectants, dimethyl sulfoxide (DMSO), glycerol (Gly), methanol (MeOH), propylene glycol (PG), ethylene glycol (EG), and acetamide (Ac), in concentrations of 1–5 M for 5 or 10 min and two non-permeable cryoprotectants, sucrose (Suc) (10%, 15%, 20%) and polyvinyl pyrrolidone (PVP) (5%, 10%, 15%) for 5 min. The embryos were then washed and incubated until hatching occurred. The toxicity of the cryoprotectant was assessed by the hatching rate. The results illustrated that permeable cryoprotectant toxicity for rainbow trout embryos increased in the order of PG < DMSO < MeOH < Gly < EG < Ac. The hatching rate of the embryos treated with permeable cryoprotectants decreased (P < 0.05) with increased concentration and duration of exposure. There were no significant decreases in hatching rate of embryos treated with sucrose and PVP with the increase of concentration; sucrose had higher hatching rates than PVP. Rainbow trout embryos at first eye pigmentation stage exhibited greater tolerance to cryoprotectants than embryos at epiboly stage.     

Germination and growth response of flax (Linum usitatissimum) to salinity stress by different salt types and concentrations

This investigation was conducted to explore the effects of salt types with different concentrations on germination and growth parameters of flax seeds. The experiment was set out as a factorial experiment based on a completely randomized design with three replications. We used six kinds of salts (NaCl, CaCl₂, CaCO₃, Na₂SO₄, Na₂CO₃ and KCl) with concentrations of 0, 50, 100 and 200 mM. According to the results, the inhibitory effects of the five salt types differed substantially, especially in the case of CaCO₃, Na₂CO₃ and Na₂SO₄. Inhibitory effects of these salts were very strong compared to those of NaCl and CaCl₂. Germination of flax seeds by various salts was in the order of NaCl > CaCl₂ > KCl > Na₂CO₃ > Na₂SO₄ > CaCO₃. The effect of salt concentration was obvious, too. Seeds of flax were able to germinate even in 200 mM NaCl, but they only germinated in distilled water or at very low CaCO₃, Na₂CO₃ and Na₂SO₄ concentrations (50 mM).