Evaluation of cell wall preparations for proteomics: a new procedure for purifying cell walls from Arabidopsis hypocotyls

Background  

The ultimate goal of proteomic analysis of a cell compartment should be the exhaustive identification of resident proteins; excluding proteins from other cell compartments. Reaching such a goal closely depends on the reliability of the isolation procedure for the cell compartment of interest. Plant cell walls possess specific difficulties: (i) the lack of a surrounding membrane may result in the loss of cell wall proteins (CWP) during the isolation procedure, (ii) polysaccharide networks of cellulose, hemicelluloses and pectins form potential traps for contaminants such as intracellular proteins. Several reported procedures to isolate cell walls for proteomic analyses led to the isolation of a high proportion (more than 50%) of predicted intracellular proteins. Since isolated cell walls should hold secreted proteins, one can imagine alternative procedures to prepare cell walls containing a lower proportion of contaminant proteins.     

Evaluation of a simple means to reduce discard in the Kattegat-Skagerrak Nephrops (Nephrops norvegicus) fishery: Commercial testing of different codends and square-mesh panels

Discarding of fish species in the Kattegat-Skagerrak Nephrops directed fisheries remains at high levels. In this work we have tested four sets of codends pair-wise with the catch comparison technique under full commercial conditions to assess their potential in reducing the catch of undersized commercial species, in particular cod. We investigate the position of a 90 mm square-mesh panel (SMP), the effect of increasing the mesh size from 90 to 120 mm in the SMP, the effect of inserting a 90 mm SMP in an 80 mm codend and the effect of increasing the codend mesh size from 90 to 120 mm in a total of 89 hauls. Inserting the SMP 3–6 m from the codline compared to 6–9 m from the codline, reduced catches of cod above the minimum landing size (MLS) and Nephrops above and below the MLS. Increasing the mesh size in the SMP from 90 to 120 mm increased the catch of cod above the MLS in weight with an overall increase of 12% in the revenue. The effect of installing a 90 mm SMP 6–9 m from the codline in a nominal 80 mm codend had no effect on the catch of cod. Increasing the nominal codend mesh size from 90 to 120 mm reduced the catch of all species below the MLS, except monkfish. Catches of Nephrops above the MLS were, however, reduced by approximately one third and the total loss in revenue was 21%.     

Growth and fatty acid composition of sesame (<Emphasis Type="Italic">Sesamum indicum</Emphasis> L.) genotypes as influence by planting dates and nitrogen fertilization in semiarid region of Northwest,Pakistan

A field experiment was conducted on silty clay loam soil in the years 2011–2012. Two sesame (Sesamum indicum L.) cultivars (Local Black and Local White) were evaluated using various 3 different sowing dates (20th June, 10th and 30th July) and four agrotechnical level (0, 40, 80 and 120 kg N ha^–1) at New Developmental Farm The University of Agriculture, Peshawar, Pakistan. The objective of this study was to evaluate the effects of sowing dates on growth, yield and oil fatty acid composition of two sesame cultivars grown under different nitrogen fertilization. Results showed that cv. Local Black was characterized by significantly higher content of oil (47%), seed yield (696 kg ha^–1) and oil yield (335 kg ha^–1) while cv. Local White had higher palmitic acid (8%) and linoleic acid (38.7%). Yield and its main components were positively affected by the earlier sowing date. With regard to fatty acid composition, a decrease in oleic and stearic acid and an increase in linoleic and palmitic acid were observed. At early sowing, oleic and palmitic acid decreased whereas linoleic and stearic acid increased. The decrease in the oleic/linoleic acid ratio observed at early sowing, suggests a possible role of temperature on the activity of oleate desaturase in the developing seeds. Intensive technology of cultivation (120 kg N ha^–1), compared to the economical technology (40 kg N ha^–1), significantly increased the seed yield of both sesame cultivars. This was due to higher number of branches, Capsules m^–2, capsules plant^–1, seeds capsule^–1 and 1000 seed weight (g). The intensive technology of cultivation had a beneficial effect on the content of palmitic acid, linolenic acid and oleic acid in sesame seed.     

Transboundary animal diseases in pakistan

Transboundary animal diseases (TADs) are highly contagious and have the potential to spread very rapidly irrespective of the national borders, causing serious economic losses. These diseases cause high morbidity and mortality in susceptible animal populations. Furthermore, the extent of their consequences may significantly affect the food security and national economics. In Pakistan, the main TADs include rinderpest, peste des petits ruminants, foot and mouth disease and avian influenza. In the present paper the status of these diseases in Pakistan is discussed.     

Nitrogen management improves lodging resistance and production in maize (Zea mays L.) at a high plant density

Lodging in maize leads to yield losses worldwide.  In this study, we determined the effects of traditional and optimized nitrogen management strategies on culm morphological characteristics, culm mechanical strength, lignin content, root growth, lodging percentage and production in maize at a high plant density.  We compared a traditional nitrogen (N) application rate of 300 kg ha^–1 (R) and an optimized N application rate of 225 kg ha^–1 (O) under four N application modes: 50% of N applied at sowing and 50% at the 10th-leaf stage (N1); 100% of N applied at sowing (N2); 40% of N applied at sowing, 40% at the 10th-leaf stage and 20% at tasseling stage (N3); and 30% of N applied at sowing, 30% at the 10th-leaf stage, 20% at the tasseling stage, and 20% at the silking stage (N4).  The optimized N rate (225 kg ha^–1) significantly reduced internode lengths, plant height, ear height, center of gravity height and lodging percentage.  The optimized N rate significantly increased internode diameters, filling degrees, culm mechanical strength, root growth and lignin content.  The application of N in four split doses (N4) significantly improved culm morphological characteristics, culm mechanical strength, lignin content, and root growth, while it reduced internode lengths, plant height, ear height, center of gravity height and lodging percentage.  Internode diameters, filling degrees, culm mechanical strength, lignin content, number and diameter of brace roots, root volume, root dry weight, bleeding safe and grain yield were significantly negatively correlated with plant height, ear height, center of gravity height, internode lengths and lodging percentage.  In conclusion, treatment ON4 significantly reduced the lodging percentage by improving the culm morphological characteristics, culm mechanical strength, lignin content, and root growth, so it improved the production of the maize crop at a high plant density.     

Anti-Oxidant Activities,Chemical Attributes and Fruit Yield of Peach Cultivars as Influenced by Foliar Application of Ascorbic Acid

Peach fruit is enriched with natural antioxidants but oxidation caused by biotic and abiotic stresses, reduce these antioxidants and consequently effect the quality and yield of the fruit. Therefore, an experiment was conducted to investigate the role of ascorbic acid to sustain the natural antioxidant activity, improve the fruit quality and yield of peach cultivars (Early Grand and Florida King). The peach cultivars, Early Grand and Florida King were tested against four levels of ascorbic acid (200, 400, 600 and 800?ppm) and compared with control as water spray. The foliar application of ascorbic acid significantly influenced anti-oxidant activity and physico-chemical attributes of peach cultivars. However, the foliar application of ascorbic acid @ 800?ppm significantly increased the fruit weight, fruit yield, fruit firmness, total soluble solids, titratable acidity, antioxidant activity of fruit peel, with least percent infected fruits and fruit juice pH as compared to the rest of the treatments. Similarly, significant variation was recorded for peach cultivars regarding anti-oxidant activity and various physico-chemical attributes. The maximum fruit weight, fruit yield, fruit firmness, total soluble solids, titratable acidity and TSS/TA ratio were noted in fruit of cultivar Florida King. On other side the foliar treated fruit of peach cultivar Early Grand had the highest percent infected fruits, fruit juice pH and antioxidant activity of fruit peel. It is concluded from the significant findings of present research that the peach cultivar Florida King performed better in terms of maximum fruit yield, whereas the cultivar Early Grand produced better quality fruits with high anti-oxidant activity when treated with 800?ppm of ascorbic acid as foliar spray.     

Nutrients management strategies to improve yield and quality of sugar beet in semi-arid regions

The objective of this study was to evaluate the effects of organic and inorganic fertilizers on the yield and quality of sugar beet genotypes (Beta vulgaris L.). Therefore, a field trial was carried out in Peshawar, Pakistan, during the winters in 2012–2013. The field experiment was conducted in a randomized complete block design with split plots, having three replications. Fertilizer treatments (control, composted manure Higo Organic Plus at 5 t ha^?1, Maxicrop Sea Gold seaweed extract at 5 L ha^?1, farm yard manure at 10 t ha^?1, inorganic nitrogen–phosphorus (NP) at 90:60 kg ha^?1, NP at 120:90 kg ha^?1 and NP at 150:120 kg ha^?1) were allotted to main plots, while genotypes (Sandrina, Serenada and Kawe Terma) were allotted to the sub-plots. Plots treated with the application of NP at 120:90 kg ha^?1 produced the highest beet yield (76.4 t ha^?1) and sugar yield (11.1 t ha^?1), and had the second highest polarizable sugar content (14.52%) and more economic return (Rs. 553,000 per hectare) as compared to control plots. Sugar beet genotype Serenada had significantly higher beet yield (55.5 t ha^?1) and sugar yield (7.9 t ha^?1) and a higher economic return (Rs. 380,000 per hectare) than the other genotypes. Sugar beet genotype Serenada supplied with NP at 120:90 kg ha^?1is recommended for the general cultivation in the agro-climatic conditions of Peshawar valley.     

Effects of Zeolite on Soil Nutrients and Growth of Barley Following Irrigation with Saline Water

ABSTRACT

Soil salinity is a major abiotic factor limiting crop production but an amendment with synthetic zeolite may mitigate effects of salinity stress on plants. The objective of the study was to determine the effects of zeolite on soil properties and growth of barley irrigated with diluted seawater. Barley was raised on a sand dune soil treated with calcium type zeolite at the rate of 1 and 5% and irrigated every alternate day with seawater diluted to electrical conductivity (EC) levels of 3 and 16 dS m^?1. Irrigation with 16 dS m^?1 saline water significantly suppressed plant height by 25%, leaf area by 44% and dry weight by 60%. However, a substantial increase in plant biomass of salt stressed barley was observed in zeolite-amended treatments. The application of zeolite also enhanced water and salt holding capacity of soil. Post-harvest soil analysis showed high concentrations of calcium (Ca^{2 +}), magnesium (Mg^{2 +}), sodium (Na⁺), and potassium (K⁺) due to saline water especially in the upper soil layer but concentrations were lower in soils treated with zeolite. Zeolite application at 5% increased Ca^{2 +} concentration in salt stressed plants; concentrations of trace elements were also increased by 19% for iron (Fe^{2 +}) and 10% for manganese (Mn^{2 +}). The overall results indicated that soil amendment with zeolite could effectively ameliorate salinity stress and improve nutrient balance in a sandy soil.     

Soil physical and micronutrient changes following clearing of a tropical rainforest

One of the options for achieving an adequate food supply in tropical Africa is by bringing more land into production. This often requires clearing and developing new vegetation areas for agricultural production. In sub-Saharan Africa, large areas of forest are being cleared for cultivation without adequate knowledge as to the consequences of the clearing method employed. This study was therefore initiated to, among other objectives, assess the effects of some forest clearing methods on soil compaction, texture, and micronutrients. Treatments were the following five clearing methods: (1) mechanical (MC), (2) semi-mechanical (SMC), (3) slash and burn (manual) (SB), (4) mechanical – no planting (MCNP), and (5) slash and burn – no planting (SBNP). After clearing, we planted maize and cowpea in every other row during the first year, and planted maize and cassava during the second year in the plots of treatments 1–3. Changes in soil texture, bulk density, and exchangeable Fe, Zn, Mn, and Cu were determined. Soil bulk density increased (with depth) in all treatments from the intitial (0–15cm) level of 1.1gcm^–3 to between 1.27 and 1.39gcm^–3 2 years after clearing, with the highest levels occurring in the MC plots. This indicated that clearing was accompanied by soil compaction. Some changes were noted in soil textural composition, but these were not of practical significance. Exchangeable Mn, Fe, and Cu (0–15cm) decreased markedly after clearing, especially under MC in the first year. Zinc levels changed little during the study period. The decline in micronutrient levels was paralleled by a decline in soil organic carbon.     

Organic soil amendments in relation to nematode management with particular reference to India

The addition of organic materials to soil has been used in managing plant-parasitic nematodes and has resulted in increased crop yield. Research on the utilization of waste materials such as oilseed cakes, chitin, compost, livestock and poultry manures, and cellulosic wastes appears promising for reducing populations of plant-parasitic nematodes. Nitrogen based amendments, plant phenolics, nematotoxic chemicals, development of predators and parasites of nematodes and microorganism stimulation have been considered to be promising agents for nematode management. In addition, organic amendments change the physical as well as the trophic structure of soil, which affects the pathogen development and overall plant growth performance. Mechanisms of action of organic soil amendments in relation to nematode management are yet to be fully explored.Plant Protection Division, Institute of Agriculture