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1.
Large‐scale patterns of fish diversity and assemblage structure in the longest tropical river in Asia 下载免费PDF全文
Although the Mekong River is one of the world's 35 biodiversity hot spots, the large‐scale patterns of fish diversity and assemblage structure remain poorly addressed. This study aimed to investigate the fish distribution patterns in the Lower Mekong River (LMR) and to identify their environmental determinants. Daily fish catch data (i.e. from December 2000 to November 2001) at 38 sites distributed along the LMR were related to 15 physicochemical and 19 climatic variables. As a result, four different clusters were defined according to the similarity in assemblage composition and 80 indicator species were identified. While fish species richness was highest in the Mekong delta and lowest in the upper part of the LMR, the diversity index was highest in the middle part of the LMR and lowest in the delta. We found that fish assemblages changed along the environmental gradients and that the main drivers affecting the fish assemblage structure were the seasonal variation of temperature, precipitation, dissolved oxygen, pH and total phosphorus. Specifically, upstream assemblages were characterised by cyprinids and Pangasius catfish, well suited to low temperature, high dissolved oxygen and high pH. Fish assemblages in the delta were dominated by perch‐like fish and clupeids, more tolerant to high temperatures, and high levels of nutrients (nitrates and total phosphorus) and salinity. Overall, the patterns were consistent between seasons. Our study contributes to establishing the first holistic fish community study in the LMR. 相似文献
2.
Soil organic carbon (SOC) is associated with environmental benefits and crop productivity; therefore, monitoring of SOC stocks is important when assessing the sustainability of agricultural systems. This study applied a hybrid method and the results of on-farm soil tests to calibrate the AMGv2 model and adapt it to local conditions. The method was applied to soils in the Limagne plain (France), which shifted to cereal production since the 1960s. Based on analysing 988 soil test data, covering the period from 1954 to 2019, it was found that SOC stocks showed a significant decrease in the three main soil types of the study area. An optimization procedure estimated that the initial ratios of stable to total carbon fall in the ranges 0.42 and 0.46 for vertisols, 0.48 and 0.52 for calcisols, and 0.56 and 0.60 for fluvisols. Simulations using these values estimated that SOC stocks declined between 1960 and 2018 by between −31 and −17%, depending on soil type. The optimized model was used to forecast the evolution of SOC stocks up to 2050. These simulations showed a further decline in SOC stocks with continuation of current practices, even assuming a 15% increase in crop yields. They indicated that stopping straw exports would stabilize stocks, while a systematic introduction of cover crops would increase stocks about 3.8% over the period considered. It is concluded that this hybrid procedure can improve the adaptation of predictive models to local conditions. 相似文献
3.
Seasonal variations in individual contacts give rise to a complex interplay between host demography and pathogen transmission. This is particularly true for wild populations, which highly depend on their natural habitat. These seasonal cycles induce variations in pathogen transmission. The seasonality of these biological processes should therefore be considered to better represent and predict pathogen spread. In this study, we sought to better understand how the seasonality of both the demography and social contacts of a mountain ungulate population impacts the spread of a pestivirus within, and the dynamics of, this population. We propose a mathematical model to represent this complex biological system. The pestivirus can be transmitted both horizontally through direct contact and vertically in utero. Vertical transmission leads to abortion or to the birth of persistently infected animals with a short life expectancy. Horizontal transmission involves a complex dynamics because of seasonal variations in contact among sexes and age classes. We performed a sensitivity analysis that identified transmission rates and disease-related mortality as key parameters. We then used data from a long-term demographic and epidemiological survey of the studied population to estimate these mostly unknown epidemiological parameters. Our model adequately represents the system dynamics, observations and model predictions showing similar seasonal patterns. We show that the virus has a significant impact on population dynamics, and that persistently infected animals play a major role in the epidemic dynamics. Modeling the seasonal dynamics allowed us to obtain realistic prediction and to identify key parameters of transmission.
Electronic supplementary material
The online version of this article (doi:10.1186/s13567-015-0218-8) contains supplementary material, which is available to authorized users. 相似文献4.
基于EST-SSR和SNP标记的大麦麦芽纯度检测 总被引:3,自引:0,他引:3
大麦麦芽作为啤酒酿造的主要原料之一,其纯度决定了麦芽原料的均一性,进而影响加工工艺和啤酒品质。为高效准确地鉴定麦芽纯度,在啤酒企业进行麦芽原料采购和质量监测时提供参考依据。本研究分别利用EST-SSR和SNP标记定性检测了按比例预混的麦芽样品纯度,并利用SNP标记定量检测了4份送检的麦芽盲样纯度。结果表明,EST-SSR标记能定性检测混杂度高于10%的麦芽样品,而SNP标记能够有效鉴定混杂度低至5%的麦芽样品。SNP标记对纯度定量检测的单次抽样的测定值与真实值之间的误差在3%以内。比较发现,本研究所用的两类分子标记均可用于麦芽样品的纯度检测,但基于KASP技术的SNP标记可以满足麦芽纯度的快速定量检测需要。 相似文献
5.
Environmental correlates of body size distribution in Cyprinidae (Actinopterygians) depend on phylogenetic scale 下载免费PDF全文
Gaël P.J. Denys Pablo A. Tedesco Thierry Oberdorff Philippe Gaubert 《Ecology of Freshwater Fish》2016,25(1):125-132
The pattern of increasing species body size with increasing latitude has been noticed in different groups of animals. Here, we used seven key environmental factors and independent contrasts to assess body size latitudinal clines in Cyprinidae at two phylogenetic levels (inter‐ and intragenera), which were defined using a genus‐level supertree. Model selection procedures revealed that environmental factors shaping body size variation in Cyprinidae differed according to the phylogenetic scale considered. At the higher phylogenetic level, we found that both temperature (negative effect) and habitat availability (positive effect of drainage basin surface area) constituted mechanistic explanations of large‐scale body size distribution. No temperature‐related body size cline was observed at the intragenus level. Instead, competitive interaction (negative effect of species richness), habitat availability (positive effect of drainage basin surface area), migration ability and available energy (positive effects of glacial coverage and actual evapotranspiration) constitute alternative explanations at this lower phylogenetic scale. We conclude that (i) at the intergenus level, cyprinids do show a tendency to be smaller at high temperatures and larger at low temperatures, (ii) this tendency no longer exists at the intragenus level, (iii) latitude per se is a weak predictor of body size clines whatever the taxonomic level analysed, (iv) generalising geographical body size patterns may be rendered difficult by the superimposition of a series of mechanisms across different taxonomic scales, and (v) habitat size, here acting positively at both taxonomic scales, may play a major role in shaping riverine species body size clines. 相似文献
6.
Mathieu Fortin Gaétan Daigle Chhun-Huor Ung Jean Bégin Louis Archambault 《European Journal of Forest Research》2007,126(4):573-585
This study proposes a within-subject variance-covariance (VC) structure to take into account repeated measurements and heteroscedasticity
in a context of growth modeling. The VC structure integrates a variance function and a continuous autoregressive covariance
structure. It was tested on a nonlinear growth model parameterized with data from permanent sample plots. Using a stand-level
approach, basal area growth was independently modeled for red spruce (Picea rubens Sarg.) and balsam fir [Abies balsamea (L.) Mill.] in mixed stands. For both species, the implementation of the VC structure significantly improved the maximum
likelihood of the model. In both cases, it efficiently accounted for heteroscedasticity and autocorrelation, since the normalized
residuals no longer exhibited departures from the assumptions of independent error terms with homogeneous variances. Moreover,
compared with traditional nonlinear least squares (NLS) models, models parameterized with this VC structure may generate more
accurate predictions when prior information is available. This case study demonstrates that the implementation of a VC structure
may provide parameter estimates that are consistent with asymptotically unbiased variances in a context of nonlinear growth
modeling using a stand-level approach. Since the variances are no longer biased, the hypothesis tests performed on the estimates
are valid when the number of observations is large. 相似文献
7.
8.
Jan Čermák Jan Gašpárek Francesca De Lorenzi Hamlyn G. Jones 《Annals of Forest Science》2007,64(5):491-501
The objectives of this paper were (1) to provide general biometry data for an 80-year-old olive (Olea europea L., cv. Coratina) grove in Andria, southern Italy, and (2) to compare different methods for estimating leaf area distributions. Stand biometry was represented by a stocking density of 132 trees ha?1, mean spacing of 8.7 m and mean social area (proportional to spacing and tree size) of about 76 m2 per tree. Trunk total circumference averaged 110 cm and after subtraction of missing or dead parts of stems averaged 81 cm, projected area of crowns averaged 17.7 m2 and the mean tree height was 4.9 m. Leaf distribution was evaluated using calibrated ground-based side photographs through image analysis and through using a simple canopy-layer model (considering hollow volume within tree crowns) and double-Gaussian curves. The mean leaf size was about 5 cm2 (distributed in a log-normal manner over the range of 2 to 12 cm2). Considering whole tree crowns, the mean leaf density was about 2.6 m2m?3; the maximum leaf area occurred in canopy layers between 1.5 to 3 m, tailing with a steeper slope to the crown base and a less steep slope to the tree-top. The foliated volume of olive crowns (mean 33.2 m3) contained on average 145 thousand leaves of the total area of 72.6 m2. The corresponding leaf area index on the stand level (LAI grove = 0.96), was rather low due to low stocking density. However when taking into account only the projected crown areas (and avoiding free space between trees), the mean LAI reached about 3.5 (range from 1–7). The radial pattern of leaf distribution derived from image analysis indicated peak LAI rad values at a distance from the stem of about 60 to 70% of crown radius in trees of different size. The applicability of different approaches to the estimation of the necessary allometric parameters is discussed. 相似文献
9.
10.
Goutailler G Guillard C Faure R Païssé O 《Journal of agricultural and food chemistry》2002,50(18):5115-5120
The solar photolytic behavior of the pesticide 4,6-diamino-2-cyclopropyl-pyrimidine-5-carbonitrile, currently known as dicyclanil, has been mimicked in a photoreactor operating with an artificial light flux. The rate and pathway of degradation were performed. An additional study, using TiO(2) photocatalysis, has been achieved in order to determine the efficiency of photocatalysis to degrade the molecule. The catalyst was titania Degussa P-25. The aim of this article was the identification of the intermediate products formed during the irradiation, to establish the degradation pathway of dicyclanil. The kinetics of the reactions were followed by liquid chromatography with a diode array detector (LC-DAD). Most of the organic compounds occurring during the photodegradation have been identified by means of liquid chromatography and mass spectrometry coupled techniques (HPLC-MS). Additional analyses were carried out to evaluate the mineralization rates into nitrate and ammonium ions. 相似文献