Dispersal of microarthropods in forest soil

This experiment was a part of a research on the soil community in anthropogenous birch stands in Finland. In that study it was found that communities of Collembola are similar in birch stands of different origin (cultivated field or spruce forest), while the communities of Oribatida are essentially different. When compared to original spruce forest, the communities of both groups are different.Cultivation eliminates the populations of most microarthropod species, that have to disperse after reforestation from the surrounding areas. The aim of the experiment was to study the ambulatory dispersal of soil microarthropods. It was carried out in plastic boxes filled with an intact block of defaunated surface soil taken from a birch stand that was established ca. 30 years earlier on a cultivated field. A strip of intact spruce forest soil was placed at one end of the boxes to harbour the source populations. At the opposite end we placed a row of pitfall traps. Soil samples were taken every two weeks at increasing distances from the source soil using a metal corer, and animals were extracted in a high gradient apparatus. The pitfalls were also emptied every two weeks. The experiment lasted for ten weeks.Pitfall and soil sample data gave an estimation of the maximum dispersal rate for each species or genus. The distance that the populations could potentially disperse in 30 years (age of the stand) indicated that some, but not all of the species could have actively migrated to the central parts of the birch stand (30 m).     

The role of soil fauna in ecosystems: A historical review

The research development in this review is divided into successive periods: (1) “From Darwin to Satchell”, covering the “pre-experimental” decades dealing with the functions of earthworms, (2) “Litterbag Studies”, characterized by field experiments on the faunal influence on litter decomposition, (3) “The Time of IBP”, concentrating on community energetics, (4) “The Microcosm Era”, laboratory studies that started with simple systems, followed by increasing complexity of experimental setup and community of organisms, including living plants, and ending to laboratory-scale “ecosystems”, (5) the recent “Biodiversity Boom”, analysing the relations between soil biodiversity and ecosystem functions, and (6) the current “Holistic View” that tends to link the diversity and functions of aboveground and belowground communities. These “periods” started roughly in this order, but are largely overlapping, since the early techniques are in continuing use together with the modern ones. The current knowledge on the role of soil biota, their diversity and various components has accumulated mainly during the last 30 years, resulting in the modern view of soil fauna as a part of the ecosystem.     

Comment on "Stability via asynchrony in Drosophila metapopulations with low migration rates"

Dey and Joshi (Reports, 21 April 2006, p. 434) studied replicate laboratory populations of Drosophila and reported that low migration led to asynchrony among subpopulations. We argue that this unexpected outcome may be due to variation in the initial size of the subpopulations and uncontrolled stochasticity in the experiments.     

Single step genomic evaluation for female fertility in Nordic Red dairy cattle

Joint Nordic (Denmark, Finland, Sweden) genetic evaluation of female fertility is currently based on the multiple trait multilactation animal model (BLUP). Here, single step genomic model (ssGBLUP) was applied for the Nordic Red dairy cattle fertility evaluation. The 11 traits comprised of nonreturn rate and days from first to last insemination in heifers and first three parities, and days from calving to first insemination in the first three parities. Traits had low heritabilities (0.015–0.04), but moderately high genetic correlations between the parities (0.60–0.88). Phenotypic data included 4,226,715 animals with records and pedigree 5,445,392 animals. Unknown parents were assigned into 332 phantom parent groups (PPG). In mixed model equations animals were associated with PPG effects through the pedigree or both the pedigree and genomic information. Genotype information of 46,914 SNPs was available for 33,969 animals in the pedigree. When PPG used pedigree information only, BLUP converged after 2,420 iterations whereas the ssGBLUP evaluation needed over ten thousand iterations. When the PPG effects were solved accounting both the pedigree and the genomic information, the ssGBLUP model converged after 2,406 iterations. Also, with the latter model breeding values by ssGBLUP and BLUP became more consistent and genetic trends followed each other well. Models were validated using forward prediction of the young bulls. Reliabilities and variance inflation of predicted genomic breeding values (values for parent averages in brackets) for the 11 traits ranged 0.22–0.31 (0.10–0.27) and 0.81–0.95 (0.83–1.06), respectively. The ssGBLUP model gave always higher validation reliabilities than BLUP, but largest increases were for the cow fertility traits.     

Custom total knee replacement in a dog with femoral condylar bone loss

Objective— To report surgical planning, technique, and outcome of custom total knee replacement (TKR) performed to manage a medial femoral condylar nonunion in a dog.
Study Design— Clinical case report.
Animal— A 3-year-old, 20 kg Karelian Bear Hound.
Methods— Computed tomographic scan of the left pelvic limb was used to build a stereolithography model of the distal portion of the femur. The model was used to create a custom augment to replace the missing medial femoral condyle and a custom stem for intramedullary condylar cemented fixation. The augment and stem were adapted to femoral and tibial components already available. The model was used to rehearse the surgery and then the custom prosthesis was implanted.
Results— Weight bearing returned 8 hours after surgery and improved thereafter. Joint alignment was normal and prosthetic joint motion was 60–165° postoperatively. The dog resumed moose hunting 3 months after surgery. Peak vertical force and impulse of the operated limb measured 17 months after surgery were 65% and 47% of the normal, contralateral limb.
Conclusion— Based on short-term follow-up, cemented canine TKR was successfully achieved for management of a severely abnormal stifle joint.
Clinical Relevance— With further refinement and development of commercially available prostheses, TKR should be possible for canine patients.     

Communities of Enchytraeidae (Oligochaeta) in planted birch stands as compared with natural forests in central Finland

This study compares the enchytraeid communities in anthropogenous birch (Betula pendula) stands of different origin with each other and with natural forests at the same latitude in Finland. Nine sites were investigated: three birch stands planted ca. 30 years prior to the study after clear-cutting of spruce stands, three birch stands established ca. 30 years earlier on arable soil (cleared from earlier coniferous forest), and three natural deciduous forests. Each site was sampled three times (May, August and October) in 1999, animals were extracted using the wet funnel method, counted and identified. Non-metric multidimensional scaling (NMS) was used to analyse the communities. There were clear differences between the birch stands established after spruce forest and after cultivation, and between these and natural deciduous stands, but even more between replicates of similarly managed forests. Total numbers and populations of most species were lower in birch-after-field than in birch-after-spruce. The superdominant species in coniferous forests, Cognettia sphagnetorum, was dominant in all birch-after-spruce sites and one natural deciduous site. Enchytronia parva was the only species more abundant in birch-after-field than in birch-after-spruce. It is hypothesized that, in addition to soil acidity, accidental transport by man explains the presence of many species on a given locality, and that competition with earthworms plays a role in regulating enchytraeid abundances.     

Genetic parameters and single versus multi-trait evaluation of udder health traits

Abstract

Genetic parameters were estimated for lactation average somatic cell score (SCS) and clinical mastitis (CM) for the first three lactations of multiparous Finnish Ayrshire cows. A multi-trait linear sire model was used for estimation of covariance components, and the efficiencies of single- versus multi-trait multi-lactation (MT) sire evaluations were compared. Heritability of SCS and CM in the first three lactations ranged from 0.11 to 0.13 and 0.02 to 0.03, respectively. Within lactation, genetic correlations between SCS and CM ranged from 0.68 to 0.72. Within both traits, across-lactation genetic correlations were lowest between 1 and 3, and highest between 2 and 3, with estimates ranging from 0.75 to 0.86 and from 0.81 to 0.98 for CM and SCS, respectively. Residual and phenotypic correlations were low and ranged from 0.09 to 0.13 and from 0.10 to 0.13, respectively. The absolute difference between genetic and residual correlations was from 0.5 to 0.6. Within-lactation genetic correlations between traits that are much less than unity suggest a multi-trait model for genetic evaluation of mastitis resistance. Comparison of model prediction performance between single-trait (ST) and MT models using a data splitting method showed that the MT model was more stable in predicting breeding values in future records of animals. Especially, for young sires and CM, the SD of EBVs from the MT model was 14 to 23% higher than the ST model, indicating more effective use of information in terms of revealing more genetic variation.     

Phylogeographic patterns and possible incipient domestication of <Emphasis Type="Italic">Jacaratia mexicana</Emphasis> A. DC. (Caricaceae) in Mexico

Jacaratia mexicana A. DC. (Caricaceae) is a tropical tree distributed throughout Mexico and Mesoamerica. Some evidence in Mexico indicates the presence of an incipient domestication process in this species. Phylogeographical analyses can potentially determine contemporary patterns of gene flow, isolation between population lineages, as well as historical processes such as population bottlenecks or expansions on their geographical areas. In this study we reconstruct the phylogeographical patterns in populations of J. mexicana A. DC., in order to find differences between genetic variation among wild and cultivated populations utilizing chloroplast DNA and nuclear DNA sequences. We generate a Bayesian phylogenetic tree, to estimate the divergence time between clades using calibrated mutation rates. We also infer the demographic history of these populations using neutrality tests among wild and cultivated accessions. We identified higher levels of haplotype and nucleotide diversity for the cpDNA and ITS types in wild populations than in domesticated populations. These results indicate a reduction of genetic diversity derived from human selection on domestication traits. Neutrality test suggests population expansion detected by the significant negative values of Fu’s Fs in the cultivated populations of this specie. These process results in an excess of rare polymorphism with the fixation of certain advantageous mutation throughout time, this implication are in accordance with the role of the strong selection in the fruit traits of J. mexicana. The dated phylogeny constructed with BEAST program indicated a dispersion pattern for the J. mexicana ancestors across the South Pacific and South Eastern populations during the late Pliocene. Posterior dispersion and divergence in the clades from Central Mexico and North Pacific are in agreement with the episodes of mountain-building in different regions of Mexico.     

Insect deterrent activity of ethanolic leaf extracts of landrace maize and determination of active compounds against Spodoptera littoralis Boisduval (Lepidoptera: Noctuidae)

Journal of Plant Diseases and Protection - The present work was carried out to gain insight into the chemical defense of maize against phytophagous insects. Leaves of sixteen landrace populations...     

Genomic prediction of grain yield in commercial Finnish oat (Avena sativa) and barley (Hordeum vulgare) breeding programmes

Genomic selection has been adopted in many plant breeding programmes. In this paper, we cover some aspects of information necessary before starting genomic selection. Spring oat and barley breeding data sets from commercial breeding programmes were studied using single, multitrait and trait-assisted models for predicting grain yield. Heritabilities were higher when estimated using multitrait models compared to single-trait models. However, no corresponding increase in prediction accuracy was observed in a cross-validation scenario. On the other hand, forward prediction showed a slight, but not significant, increase in accuracy of genomic estimated breeding values for breeding cohorts when a multitrait model was applied. When a correlated trait was used in a trait-assisted model, on average the accuracies increased by 9%–14% for oat and by 11%–28% for barley compared with a single-trait model. Overall, accuracies in forward validation varied between breeding cohorts and years for grain yield. Forward prediction accuracies for multiple cohorts and multiple years’ data are reported for oat for the first time.