Molecular identification of blast resistance genes in rice landraces from northeastern India

Rice blast disease caused by the fungus Magnaporthe oryzae is one of the most devastating diseases causing huge losses worldwide. In the present study, major blast resistance genes were investigated in landraces originating from northeastern India. Based on phenotypic evaluation, 288 landraces were classified into three distinct groups: resistant (75), moderately resistant (127) and susceptible (86). The genetic frequencies of the 18 major blast resistance genes were between 6.2% and 27.4%, with only two genotypes possessing a maximum of nine blast resistance genes. The cluster and population structure analysis grouped the landraces into two groups. Through principal coordinate analysis, the scatter plots partitioned the resistant and moderately resistant landraces into different groups. Analysis of molecular variance showed maximum (96%) diversity within populations and least (4%) diversity between populations. Association analysis identified six markers, CRG4_2, RM72, tk59-2, pi21_79-3, RM1233 and RM6648, that are significantly associated with blast disease and explained a phenotypic variance of 1.1–6.5%. The associated genes could be used in marker-assisted rice breeding programmes for gene pyramiding to develop rice varietal resistance against blast disease. The present study represents a valuable blast resistance genetic resource that could be used for identification of new R genes, donors for blast resistance, and genomic studies.     

Integrated effect of population and weed management regimes on weed dynamics,performance, and productivity of basmati rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.)

Weeds caused serious problem on yield reduction of basmati rice worldwide. Losses caused by weeds varied from one country to another, depending on the presence of dominant weeds and the control methods practiced by farmers; therefore, suitable plant population and weed management practices should be adopted. Keeping these in mind, a field experiment was carried out during kharif seasons of 2009 and 2010 at crop Research Centre of SVPUA&T, Meerut, India comprising 4 planting geometries, viz. 20, 30, 40, and 50 hills m^?2 as main plot factor, and 5 weed management practices (Butachlor @ 1.0 kg ha^?1, Butachlor @ 1.0 kg ha^?1 fb (followed by) one hand weeding, Butachlor @ 1.0 kg ha^?1 fb Almix @ 4 g ha^?1, two hand weedings and weedy check) in a split plot design with 3 replications. Experimental results revealed that plant population of 50 hills m^?2 proved superior over that of 20 hills m^?2 in respect of weed density, weed dry weight, number of tillers m^?2, yield attributes, grain, straw, and biological yields. The maximum grain yield (29.00 and 31.00 q ha^?1) and straw yield (51.30 and 52.50 q ha^?1) were recorded in 50 hills m^?2 followed by 40 hills m^?2 during 2009 and 2010, respectively. In respect of nitrogen, phosphorus, and potassium removal, a reverse trend was observed: the highest in 20 hills m^?2 followed by 30, 40, and 50 hills m^?2. As far as the weed management practices are concerned, both chemical and mechanical methods of weed control were found superior over weedy check. The lowest weed density, dry weight, and highest weed control efficiency, maximum length of panicle^?1, number of panicle (m²), and 1000-grain weight and grain yield of 30.40 and 32.60 q ha^?1 were recorded with two hand weedings which was at par with Butachlor @ 1.0 kg ha^?1 fb one hand weeding over rest of the weed management practices.     

Fishmeal alternative from renewable CO2 for rainbow trout feed

The rapid global growth in fish farming and limited supply of fish meal (FM) has consequently reduced FM inclusion levels in compound feeds leading to a higher reliance on alternative protein sources. Sasya is a single cell protein (SCP) product that has a similar amino acid profile as FM. The aim of this study was to evaluate the effects of replacing FM with SCP on in vivo digestibility, growth, feed efficiency, whole‐body proximate/amino acid composition and gene expression levels of various hepatic enzymes in rainbow trout (Oncorhynchus mykiss). Three isonitrogenous (470 g/kg crude protein) and isolipidic (18 g/kg crude lipid) diets were formulated as follows: Diet 1: control (30% FM); Diet 2:24% FM + 6% SCP and Diet 3:18% FM + 12% SCP. Each diet was hand‐fed to triplicate tanks containing 30 rainbow trout fingerlings (4.99 ± 0.20 g) for 9 weeks. Apparent digestibility coefficients of SCP for dry matter, crude protein, lipid and energy were 60, 80, 93 and 74% respectively. Growth performance (final weight: 69–71 g), feed conversion ratios (0.91–0.94) as well as whole‐body protein and amino acid composition were unaffected by diets. However, Diet 3 significantly increased whole‐body crude fat and energy. Fish fed the SCP‐based diets had significantly higher expression for carnitine palmitoyltransferase‐1b (CPT1b), fatty acid delta 6 desaturase (FADS6) and fatty acid elongase 5 compared to the control. Overall, the quality of the SCP was similar as FM. Therefore, this product could enlarge the portfolio of alternative protein sources that can be used in fish diets and thus open a new market opportunity for use of a new feed resource in the feed industry.     

Community water management to intensify agricultural productivity in the polders of the coastal zone of Bangladesh

Paddy and Water Environment - Most of the lands of the southern coastal zone of Bangladesh are protected from tidal flooding and storm surges by embankments constructed during the 1960s and 1970s,...     

Evaluation of carbon sources,gelling agents,growth hormones and additives for efficient callus induction and plant regeneration in Indian wheat (<Emphasis Type="Italic">Triticum aestivum</Emphasis> L.) genotypes using mature embryos

Various factors affecting in vitro regeneration like different carbon sources, different gelling agents, and growth additives were assessed comprehensively for callus induction and plant regeneration for five Indian wheat cultivars using mature embryos as the explants for the first time. The tissue culture responses of cultivars WH-1105, HD-2967, and PBW-343 have not been reported earlier. Besides, the effect of different concentrations of the cytokinin, zeatin has also been optimized. Using the optimized factors, the efficiency of five different varieties, i.e., HD 2967, C 306, RAJ 3765, WH 1105, and PBW 343 was evaluated for regeneration. Modified MS basal medium containing dicamba reduced precocious germination of the embryo and induced embryogenic callus more efficiently. Removal of embryogenic calli from non-regenerable structures during early callus phase improved plant regeneration. These calli on zeatin (1.0 mgl^-1) and dicamba (0.1 mgl^-1) containing medium showed the highest regeneration frequency (98%) with a maximum of 8-9 shoots per calli. Maltose had the maximum callusing and regeneration percentage than other carbon sources. Various gelling agents did not have any significant difference on the regeneration. Of all the varieties, C-306 and HD-2967 were found to be more regenerative and can be used in transformation experiments.     

The linkage between the stem rust resistance gene Sr2 and pseudo-black chaff in wheat can be broken

Recessively inherited gene Sr2 has provided the basis of durable resistance to stem rust (caused by Puccinia graminis tritici) in wheat (Triticum aestivum L.) worldwide. The associated earhead and stem melanism or ‘pseudo‐black chaff’ is generally used as a marker for this gene. Sr2 has been postulated in many wheat cultivars of India including ‘Lok 1’, based on associated pseudo‐black chaff in adult plants, and leaf chlorosis in seedlings. However, dominant inheritance of the resistance factor operating in ‘Lok 1’, and a 13 : 3 (resistant : susceptible) F₂ segregation in the ‘Sr2‐line’ (‘Chinese Spring’⁶ × ‘Hope’ 3B) × ‘Lok 1’ cross confirmed that Sr2 was absent in ‘Lok 1’. Susceptible plants with a pseudo‐black chaff phenotype were observed in F₂ populations of ‘Agra Local’ (susceptible) × ‘Lok 1’, and the ‘Sr2‐line’ × ‘Lok 1’ crosses. Most of the F₃ families derived from the susceptible F₂ segregants with pseudo‐black chaff phenotypes were true breeding for the expression of pseudo‐black chaff with susceptibility to stem rust. Thus, linkage of pseudo‐black chaff with Sr2 in wheat can be broken, and hence, caution may be exercised in using pseudo‐black chaff as a marker for selecting Sr2 in breeding programmes.     

Screening and selecting novel AM fungi and Azotobacter strain for inoculating apple under soil solarization and chemical disinfestation with mulch practices for sustainable nursery management

The objective of this study is to investigate the response of screening, and selection of novel indigenous AM fungal species and Azotobacter chroococcum strains for inoculating apple under different soil disinfestations and moisture conservation mulch practices for sustainable nursery management. Two local AM fungal species namely, Glomus fasciculatum (Thaxter sensu Gerdemann) and Glomus mosseae (Nicol. & Gerd.), and two strains of A. chroococcum viz., A. chroococcum strain-I (AZ₁) and A. chroococcum strain-II (AZ₂) were inoculated at nursery stage under soil solarization, chemical disinfestation and natural soil conditions at four different mulch materials namely, black plastic mulch (BPM), and organic mulches, i.e. grass mulch (GM); cover crops (CC); green manuring + clean cultivation (Gm + Cc). The comparative performance of the seedlings on the impact of local AM species and A. chroococcum strains on growth characteristics, microbial population, root colonization and leaf nutrient status was evaluated. The inoculation of seedlings to G. fasciculatum and AZ₁ increased all growth characteristics (plant height, stem diameter, leaf area and total root length), microbial consortium of the rhizosphere soil and leaf N, P, K and Zn content in all those plots where soil solarization and black plastic mulching was used followed by chemical disinfestations and natural soil conditions at all other mulch types used. These findings suggested that the soil inoculation of G. fasciculatum and AZ₁ strain to seeds and/or the saplings under soil solarization with black plastic mulch attained a desirable plant height and become ready for grafting which however saved a period of 1 year for nursery management compared to traditional nursery raising practice, and thus, it may be a viable and feasible approach to maintain soil productivity under nutrient limited soils for sustainable apple nursery production under temperate rain-fed conditions.     

Soil biological properties under different tree based traditional agroforestry systems in a semi-arid region of Rajasthan,India

An investigation was carried out in an Entisol at farmers’ field in Jaipur district, Rajasthan, India during 2002–2004 to evaluate the effect of traditionally grown trees on soil biological characteristics. Traditionally grown trees in farm lands for study consisted of Prosopis cineraria (L.), Dalbergia sissoo (Roxb.) ex DC, Acacia leucophloea (Roxb.) and Acacia nilotica (L.) Del. having a canopy diameter of 8 m. Results revealed significant and substantial improvement in soil biological activity in terms of microbial biomass C, N and P, dehydrogenase and alkaline phosphatase activity under different tree based agroforestry systems as compared to a no tree control (cropping alone). Soil microbial biomass C, N and P under agroforestry varied between 262–320, 32.1–42.4 and 11.6–15.6 μg g⁻¹ soil, respectively, with corresponding microbial biomass C, N and P of 186, 23.2 and 8.4 μg g⁻¹ soil under a no tree control. Fluxes of C, N and P through microbial biomass were also significantly higher in P. cineraria based land use system followed by D. sissoo, A. leucophloea and Acacia nilotica in comparison to a no tree control. Thus, it is concluded that agroforestry system at farmers’ field enhance soil biological activity and amongst trees, P. cineraria based system brought maximum and significant improvement in soil biological activity.     

Measurement of genetic dissimilarity in fieldpea (<Emphasis Type="Italic">Pisum sativum</Emphasis> L.) genotypes using RAPD markers

The present investigation was carried out on fifteen germplasm lines of Pisum sativum L. were used for characterization using Randomly Amplified Polymorphic DNA (RAPD) markers. While 12 random primers were taken, out of them 11 primers gave amplification. These primers gave a total of 133 bands out of which 106 were polymorphic. Genetic similarities of the RAPD profiles were estimated by using Jaccard’s coefficient with NTSYSpc 2.0 software. The similarity index values ranged from 0.263 to 0.793 indicating the presence of enormous genetic diversity at molecular level. A dendrogram generated by cluster analysis divided fifteen fieldpea genotypes into two Groups A and B. Major Group A have five genotypes and major Group B have nine genotypes.     

Growth potential and biocide tolerance of non-heterocystous filamentous cyanobacterial isolates from rice fields of Uttar Pradesh, India

Twenty-eight non-heterocystous filamentous cyanobacterial strains were isolated from different locations in the rice fields of Uttar Pradesh. These strains belonged to seven genera, namely Pseudanabaena, Limnothrix, Phormidium, Microcoleus, Plectonema, Lyngbya and Oscillatoria. A wide variation was observed in these strains with respect to dry weight, generation time and tolerance to biocides. Lyngbya palmarum and Oscillatoria acuminata showed maximum biomass (dry weight), while Pseudanabaena frigidum, Phormidium foveolarum, O. acuminata, Lyngbya palmarum and Lyngbya spiralis showed a significantly shorter generation time as compared to other strains studied. An interesting feature observed was that these non-heterocystous filamentous cyanobacteria possessed a remarkable tolerance to the biocides 2,4-dichlorophenoxyacetic acid, Malathion and Dimecron, at doses much higher than those recommended for rice crops.