Non‐spherical pearl layers in the Polynesian ‘black‐lipped’ Pinctada margaritifera: The non‐nacreous deposits compared to microstructure of the shell growing edge

Cultivated pearls frequently exhibit morphological irregularities making obvious that mineral deposition was irregularly distributed onto nucleus surface. Taking advantage of experimental cultivations with short durations (from 10 days to few months), these irregular deposits predating occurrence of the nacre were investigated in Polynesian pearls by biochemical characterizations and a series of physical methods. Diversity in the resulting data suggests that various in‐depth alterations of the biomineralization mechanism may have occurred during the grafting process, leading to diversity in the biochemical pathways to nacreous deposition. This allows a precise discussion of current views about pearl formation. The “reversed shell theory” is formally disproved through point to point comparison with development of the shell growing edge. Similarity of pearl formation with “regeneration” or “shell repair” is also discussed, emphasizing the differences between these concepts.     

Ecoviability for ecosystem‐based fisheries management

Reconciling food security, economic development and biodiversity conservation is a key challenge, especially in the face of the demographic transition characterizing many countries in the world. Fisheries and marine ecosystems constitute a difficult application of this bio‐economic challenge. Many experts and scientists advocate an ecosystem approach to manage marine socio‐ecosystems for their sustainability and resilience. However, the ways by which to operationalize ecosystem‐based fisheries management (EBFM) remain poorly specified. We propose a specific methodological framework—viability modelling—to do so. We show how viability modelling can be applied using four contrasted case‐studies: two small‐scale fisheries in South America and Pacific and two larger‐scale fisheries in Europe and Australia. The four fisheries are analysed using the same modelling framework, structured around a set of common methods, indicators and scenarios. The calibrated models are dynamic, multispecies and multifleet and account for various sources of uncertainty. A multicriteria evaluation is used to assess the scenarios’ outcomes over a long time horizon with different constraints based on ecological, social and economic reference points. Results show to what extent the bio‐economic and ecosystem risks associated with the adoption of status quo strategies are relatively high and challenge the implementation of EBFM. In contrast, strategies called ecoviability or co‐viability strategies, that aim at satisfying the viability constraints, reduce significantly these ecological and economic risks and promote EBFM. The gains associated with those ecoviability strategies, however, decrease with the intensity of regulations imposed on these fisheries.     

Effect of environmental conditions on the seasonal and inter‐annual variability of small pelagic fish abundance off North‐West Africa: The case of both Senegalese sardinella

The objective of this study was to assess the effect of environmental variations on the abundance of Sardinella aurita and Sardinella maderensis in Senegalese waters in the upwelling system. Monthly data indicating the abundance of sardinella were first estimated from commercial statistics, using Generalized Linear Model from 1966 to 2011. Abundance indices (AIs) were then compared with environmental indices, at the local scale, a Coastal Upwelling Index (CUI) and a coastal Sea Surface Temperature (SST) index, and on a large scale, the North Atlantic Oscillation (NAO), the Atlantic Multidecadal Oscillation (AMO) and the Multivariate El Niño Southern Oscillation Index (MEI), using correlations and times series analyses. The results showed that the abundance of sardinella is determined by a strong seasonal pattern and inter‐annual fluctuations. The abundance of S. aurita peaked in spring and in autumn, whereas that of S. maderensis peaked in the warm season (July–September). The trend of the sardinella abundance was significantly correlated with the CUI, especially in autumn and spring. Interannual fluctuations of S. maderensis and S. aurita abundance are, respectively, driven by the precocity and the duration of the upwelling season that is attributed to distinct migration patterns. Both sardinella species also respond with a delay of around 4 years to the winter NAO index and the autumn CUI, and the AMO index, respectively, both related to migration patterns. The wide variations in sardinella biomass are caused by variations in environmental conditions, which should be considered in the implementation of an ecosystem‐based approach in sardinella stocks management.     

Modelling approach for the quantitative variation of sex expression in monoecious hemp (Cannabis sativa L.)

Sex expression is of primary importance for the genetic improvement and production of monoecious hemp: masculinized phenotypes are associated with higher fungal sensitivity, and feminized phenotypes with higher seed yields. However, sex expression varies quantitatively among plants and nodes and with time. Here, we developed eight variables that characterize the sex expression in monoecious hemp to dissect its genetic determinism. The monoecy degree (MD), ranging from 1 (mostly male flowers) to 5 (mostly female flowers), was recorded for each node of 167 plants, at 6 times at 1‐week intervals. Two types of longitudinal variables were constructed: ‘synthesis’ (mean MD and percentages of nodes of each MD) and ‘structure’. The latter consisted of the parameters of a logistic curve describing MD as a function of the node position. An r‐square of 0.97 was obtained between the estimated and observed MD values, and the logistic parameters were weakly correlated with each other and with the synthesis variables. Therefore, we conclude that the present modelling approach is relevant for characterizing the sex expression in monoecious hemp.     

Evaluation of the temporal distribution of <Emphasis Type="Italic">Fusarium graminearum</Emphasis> airborne inoculum above the wheat canopy and its relationship with Fusarium head blight and DON concentration

With the aim of unravelling the role of airborne Fusarium graminearum inoculum in the epidemic of Fusarium head blight (FHB) caused by this species in wheat spikes, a network of Burkard air samplers was set up in five wheat fields distributed in Belgium from 2011 to 2013. Each year from April to July, the daily amounts of F. graminearum inoculum above the wheat canopy were quantified using a newly developed TaqMan qPCR assay. The pattern of spore trapping observed was drastically different per year and per location with a frequency of detection between 9 and 66% and a mean daily concentration between 0.8 and 10.2 conidia-equivalent/m³. In one location, air was sampled for a whole year. Inoculum was frequently detected from the wheat stem elongation stage until the end of the harvesting period, but high inoculum levels were also observed during the fall. Using a window-pane analysis, different periods of time around wheat flowering (varying in length and starting date) were investigated for their importance in the relation between airborne inoculum and FHB parameters (FHB severity, frequency of F. graminearum infection and DON). For almost all the combinations of variables, strong and significant correlations were found for multiple window lengths and starting times. Inoculum quantities trapped around flowering were highly correlated with F. graminearum infection (up to R?=?0.84) and DON (up to R?=?0.9). Frequencies of detection were also well correlated with both of these parameters. DON concentrations at harvest could even be significantly associated with the F. graminearum inoculum trapped during periods finishing before the beginning of the anthesis (R?=?0.77). Overall, these results highlight the key role of the airborne inoculum in F. graminearum epidemics and underline the importance of monitoring it for the development of disease forecasting tools.     

Improving preventive locust management: insights from a multi‐agent model

BACKGROUND

Preventive management of locust plagues works in some cases but still fails frequently. The role of funding institution awareness was suggested as a potential facilitating factor for cyclic locust plagues. We designed a multi‐agent system to represent the events of locust plague development and a management system with three levels: funding institution, national control unit and field teams. A sensitivity analysis identified the limits and improvements of the management system.

RESULTS

The model generated cyclic locust plagues through a decrease in funding institution awareness. The funding institution could improve its impact by increasing its support by just a few percent. The control unit should avoid hiring too many field teams when plagues bring in money, in order to ensure that surveys can be maintained in times of recession. The more information the teams can acquire about the natural system, the more efficient they will be.

CONCLUSION

We argue that anti‐locust management should be considered as a complex adaptive system. This not only would allow managers to prove to funders the random aspect of their needs, but would also enable funders and decision‐makers to understand and integrate their own decisions into the locust dynamics that still regularly affect human populations. © 2017 Society of Chemical Industry     

A high virulence and pathotype diversity of Puccinia striiformis f.sp. tritici at its centre of diversity,the Himalayan region of Pakistan

Information on the pathogen virulence profile and diversity across locations is crucial for host germplasm improvement and deployment. The rapid acquisition of virulence to host resistance by the wheat yellow/stripe rust pathogen (Puccinia striiformis f.sp. tritici: PST), makes it crucial to know about its virulence and pathotype diversity. Recent studies have shown the plausible centre of origin of the pathogen in the Himalayan region, with Pakistan being the most ancestral to all other worldwide populations. To assess the status of virulence and pathotype diversity in the Himalayan region of Pakistan, a set of 127 PST infected wheat samples from eight locations were collected, multiplied and pathotyped using a set of 36 differential lines from the world set, European and Chinese sets, and 9 Avocet Yr isolines. Virulence (Vr) was recorded to 18 out of 24 tested yellow rust resistance (Yr) genes, while a total of 53 pathotypes were detected out of 127 isolates tested. Virulence was found to the resistance genes rarely deployed in Pakistan (Vr8) or even worldwide level (Vr5), while virulence to Vilmorin 23 (Yr3+) was absent in Pakistan, which is common in Europe. None of the pathotypes was dominant across all locations, however, no clear spatial structuring was observed for the studied locations. Our results suggested a high virulence and pathotype diversity in line with the previously proposed potential role of sexual recombination in the temporal maintenance of PST in the Himalayan region of Pakistan. This information should be useful in host resistance gene improvement and deployment.     

Risk factors influencing death prior to discharge in 302 dogs undergoing unilateral adrenalectomy for treatment of primary adrenal gland tumours

Adrenalectomies for canine adrenal tumours are associated with peri-operative morbidity and mortality. Objectives of this study included assessing the prognostic value of tumour- or surgery-related variables in predicting peri-operative mortality and overall survival in dogs undergoing adrenalectomies for primary adrenal tumours as well as pre-treatment with phenoxybenzamine on survival to discharge with pheochromocytomas specifically. A multi-institutional retrospective cohort study was performed across nine institutions. Electronic medical record searches identified 302 dogs which met the inclusion criteria. Data collected included dog-related, tumour-related, treatment-related, surgery-related, and outcome variables. Univariate and multivariable logistic regression and cox proportional hazards models were used to identify variables associated with death prior to discharge and tumour-related survival. Overall, 87% of dogs survived to discharge with a tumour-related survival time of 3.96 years. Post-operative complications were reported in 25%. Increased surgical time (p = 0.002) and pre-surgical medical treatment other than phenoxybenzamine (p = 0.024) were significantly associated with increased peri-operative mortality while ureteronephrectomy (p = 0.021), post-operative pancreatitis (p = 0.025), and post-operative aspiration pneumonia (p < 0.001) were significantly associated with decreased overall survival. Phenoxybenzamine pretreatment had no effect on peri-operative mortality. Thirty-seven of 45 (82%) dogs with pheochromocytomas not pretreated survived to discharge, and 50 of 59 (85%) dogs with pheochromocytomas pretreated with phenoxybenzamine survived to discharge (p = 0.730). This study provides information on risk factors for death prior to discharge and tumour-related survival that may help guide clinical management and owner expectations. In addition, the study findings challenge the previously reported benefit of phenoxybenzamine for pretreatment of dogs undergoing adrenalectomies for pheochromocytomas.     

On the deep origin of the depressed rings on pearl surface illustrated from Polynesian Pinctada margaritifera (Linnaeus 1758)

Among the various defects that contribute to depreciate the commercial value of pearls, the occurrence of depressed rings is the most spectacular. Through a series of structural, physical and chemical characterizations of the pearl layer, this paper reveals that the origin and initial stages of these essentially superficial defects are to be found in the earliest stages of pearl formation. The disturbance in growth of the nacreous envelopes is the physical cause of the occurrence of these depressed areas. Attention is also drawn on the unexpected relationship between these large morphological alterations of the pearl surfaces and more punctual defects primarily well visible in the strongly coloured Polynesian pearls. An understanding of the actual origin of these very negative patterns opens the way to reduce their statistical occurrence by paying attention to the grafting practice.     

Response of Scotian Shelf silver hake (Merluccius bilinearis) to environmental variability

Commercially‐exploited fish populations are not only shaped by fishing pressure, but also by the dynamics of their environment. By quantifying the influence of environmental variability, fisheries management advice can be improved and uncertainties reduced. To this end, we developed statistical models of the response of Scotian Shelf silver hake stock metrics to variability in zooplankton community composition and phenology over the past 18 years and in the physical environment since 1985. Dominant modes of variability in these pelagic habitat indicators were characterized using principal component analysis, and the relationships of silver hake condition, abundance, and recruitment to pelagic habitat variability were assessed using generalized additive models. Condition was largely modulated by the onset and duration of the spring bloom, which controls food availability. In contrast, adult abundance was governed by composition of the zooplankton community and bottom‐water temperature, which dictates the distribution of silver hake. Finally, recruitment was affected by both thermal conditions and food availability. Our results presented here form the basis for qualitative assessment of ecosystem attributes and the influence on silver hake stock productivity.