Effects of genes increasing the number of spikelets per panicle,TAW1 and APO1, on yield and yield-related traits in rice

The genes TAWAWA1 (TAW1) and ABERRANT PANICLE ORGANIZATION1 (APO1) increase the number of spikelets per panicle (SN). In the present study, we examined the effects of these genes on morphological traits, yield, and yield-related traits including yield components using the near-isogenic lines (NILs) in the genetic background of a japonica rice variety, Koshihikari – NIL-taw1, NIL-apo1-D3, and NIL-apo1-D4 – in a field experiment. The SN and total number of spikelets per area of the three NILs were larger than those of Koshihikari. However, the yield of the three NILs did not exceed that of Koshihikari due to their low filling ability. Interestingly, our field experiments indicated that TAW1 did not affect the diameter of internodes and the PN, whereas APO1 decreased the PN and increased the diameter of internodes. These results suggest that TAW1 and APO1 differently affect yield-related traits.     

Weather-induced economic damage to upland crops and the impact on farmer household income in Northeast Thailand

Paddy and Water Environment - In Thailand, climate change has a direct effect on the export of food and agricultural products, which is one of the main revenue sources of the country. Furthermore,...     

Host range and molecular analysis of Beet leaf yellowing virus,Beet western yellows virus-JP and Brassica yellows virus in Japan

Beet western yellows virus (BWYV; genus Polerovirus, family Luteoviridae) is one of the most important viruses causing yellowing disease of many field and vegetable crops. This study isolated different poleroviruses from sugar beet, spinach, radish and brassica in Japan, and identified them as BWYV-JP, Beet leaf yellowing virus (BLYV), Brassica yellows virus (BrYV) and BrYV-R (radish strain) based on host range and molecular analysis. Among over 100 plant species from 19 families inoculated with the vector Myzus persicae, about half of the species in 13 families were infected with some of these viruses. BLYV shared a similar host range to Beet mild yellowing virus (BMYV). These had a much more limited host range than BWYV-JP, which resembled BWYV-USA. The host range of BrYV was similar to that of Turnip yellows virus (TuYV). Phylogenetic analyses at the 5′ portion (replication-related gene) of the genome showed that BLYV, BMYV, BWYV (-JP and -USA) and Cucurbit aphid-borne yellows virus (CABYV) formed one large group, whereas BrYV and TuYV were grouped together. BLYV and BWYV were most closely related to each other, and were more closely related to CABYV than to BMYV. However, at the 3′ end (coat protein gene), BLYV and BWYV-JP formed a distinct group, separated from the BrYV group, which in turn was more closely related to BWYV-USA, BMYV, TuYV and Beet chlorosis virus, a group originating from outside Asia. Thus, this study presents host range differences and phylogeographical relationships of BWYV-like poleroviruses that are distributed worldwide.     

Nutrient starvation affects expression of LC3 family at the feto-maternal interface during murine placentation

LC3 − the mammalian homolog of Atg8 − was found as autophagosome membrane binding protein in mammals and widely used as an autophagosomal marker. LC3A, B and C show different expression patterns in each tissue. The aim of this study was to reveal the differences of expression patterns among LC3 families in mouse placenta under normal condition and nutrient starving condition. LC3A and B were highly expressed in decidual cells. LC3A and B were increased in D14 compared with D12 and D16 in mouse placenta, while LC3C was decreased. Starvation induced increase in LC3B expression specifically. Immunohistochemistry showed different expression patterns among LC3A, B and C. LC3A expression in syncytiotrophoblast was vanished by starvation. The results of real time RT-PCR suggested differences between D12 and D16 in autophagic cascade induced by starvation. Taken together, this study suggests that autophagy could play a role in placental invasion system and that nutrient starvation affects LC3B expression.     

Predictive modes of action of pesticides in uterine adenocarcinoma development in rats

Endometrial adenocarcinoma in the uterine corpus is a malignant cancer that occurs in menopausal women and aged rodents. Because of the similarities in pathogenesis and morphology of endometrial adenocarcinoma in rodents and humans, prediction of the modes of action (MOA) in uterine carcinogenesis is important for extrapolation of rodent data to humans. Three MOAs have been accepted as major pathways for uterine carcinogenesis in rodents: 1) estrogenic activity, 2) increased serum 17beta-estradiiol (E2) to progesterone (P4) ratio and 3) modulation of estrogen metabolism to produce 4-hydroxyestradiol via P450 induction. Inhibition of estrogen excretion and increased aromatase in situ in the tumor are also a potential pathway. Here, chemicals showing uterine carcinogenicity were chosen from approximately 300 pesticides evaluated in Japan within the past decade, and their mechanisms were predicted using parameters from mechanistic and toxicity studies. Seven pesticides increased uterine tumor formation in rats, and the pathways of 4 pesticides could be predicted based on various mechanistic studies. The MOAs of cyenopyrafen and benthiavalicarb-isopropyl were predicted to be modulation of estrogen metabolism, while those of pyriminobac-methyl and spirodiclofen were predicted to be increased E2 to P4 ratio. The driven pathways of metazosulfuron and isopyrazam could not be predicted using several mechanistic studies. No mechanistic studies have been reported for sedaxane, which has a chemical structure and toxicological profile similar to isopyrazam. Our results indicated that appropriate mechanistic studies are useful for mechanism prediction in risk assessment. From this analysis, a flowchart showing a decision tree for predictive MOAs in uterine carcinogenesis was proposed.     

Effect of shoot size and phenological variation of host plants on the spatial patterns of cynipid galls

The effects of shoot size and differences in budburst phenology ofQuercus serrata trees on the spatial patterns of galls were investigated for two cynipid species: the sexual generation ofAndricus moriokae and the agamic generation ofAphelonyx glanduliferae. There were marked differences in budburst phenology, but these did not affect the gall density on the tree. The galls of both cynipids showed a contagious distribution in their respective trees, but different abundance patterns under high gall density. The mean number of galls ofA. glanduliferae over a shoot size range was positively correlated with shoot size. More galls ofA. moriokae appeared on larger shoots on trees on which many buds had started growing before oviposition by the agamic adults. In the case of a tree on which a few buds had burst by the time of oviposition, the mean numbers ofA. moriokae galls on shoots of particular size ranges depended on the frequency of shoots in the size class. These results suggest that, although these cynipids prefer to attack larger shoots within a host tree, they may exhibit plasticity in their preference in response to changes in budburst phenology of the host plant relative to the time of oviposition.     

Generation and alteration of norlignans in a transition zone during the drying of a Cryptomeria japonica log

Sugi (Cryptomeria japonica D. Don) produces secondary metabolite norlignans in xylem. Several norlignans are involved in the coloration of heartwood and defense of sapwood against microbial invasion. Their biosynthetic process should be well understood so that their properties can be exploited to improve the quality and utility of C. japonica wood. Unfortunately, information on the norlignan biosynthesis is limited because norlignans are mainly synthesized in a particular season in the transition zone (TZ) along with the heartwood formation, and is difficult to study. Although the generation of two norlignans of C. japonica, agatharesinol and (E)-hinokiresinol, has been reported, systems for producing other norlignans are not yet known. To establish a novel norlignan generating system, we examined the changes occurring in norlignans in a TZ during the process of drying a C. japonica log. On the day of felling, the TZ contained agatharesinol and (E)-hinokiresinol, which increased until they reached a maximum on day 40 after felling. Sequirin-C appeared on day 40 and increased to day 70. The generation of sequirin-C in the TZ can be used to investigate the biosynthetic process of heartwood norlignans. This study describes for the first time the changes that occur in the composition of norlignan during the drying of the TZ.     

Variation in understory structure and plant species diversity influenced by silvicultural treatments among 21- to 26-year-old Picea glehnii plantations

We investigated effects of silvicultural treatments (planting and subsequent treatments) on understory structure and plant species diversity in managed Picea glehnii plantations (21–26 years old) in northern Japan. We evaluated the importance of each treatment (machinery site preparation, planting, weeding, and thinning) in 19 plantations, with considerable variation among treatments overall. The understory had 98 vascular plant species; the most dominant species was a dwarf bamboo Sasa senanensis, followed by tree species Abies sachalinensis and Betula ermanii. Multiple regression analyses showed that thinning negatively influenced plant species diversity. Planting density showed a strong positive correlation with density of seedlings (height <20 cm), but few independent variables were correlated with density of saplings (height ≥20 cm and diameter at breast height <1 cm). The negative effect of thinning and the positive effect of planting density seem to be related to the existence or reinitiation of dense cover of Sasa senanensis. We present possible mechanisms of response to treatments to generalize the results. We then suggest ways to improve current treatments to meet the goals of wood production and biodiversity conservation in the region.     

Allometric model of the height–diameter curve for even-aged pure stands of Japanese cedar (<Emphasis Type="Italic">Cryptomeria japonica</Emphasis>)

We derived an allometric model of the height–diameter curve for even-aged pure stands, which was a modification of the earlier model proposed by Inoue (2000a). An individual-dependent allometric equation was used as the height–diameter curve. Using the discriminant analysis method, all trees composed of a stand were stratified into upper and lower trees. It was assumed that both relationships between mean tree height H _m and upper tree height H _u and between mean DBH D _m and mean DBH of upper trees D _u could be described by the time-dependent allometric power equations. The height–diameter curve showed an average relationship between tree height and DBH of a given stand at a given time, and hence it could be assumed that the height–diameter curve contained two points (D _m , H _m ) and (D _u , H _u ). With these assumptions, we derived an allometirc model of height–diameter curve, which allowed the coefficients of the curve to be estimated from mean tree height and mean DBH. The proposed model was fitted to Japanese cedar (Cryptomeria japonica D. Don) data. The error ratio of the allometric model ranged from 2.254% to 13.412% (mean = 6.785%), which was significantly smaller than that of the earlier model. When the error of mean tree height was ±1.0 m or less, the effect of the error of mean tree height on the error ratio was comparatively small. This suggested that the error of ±1.0 m in mean tree height could be accepted in the estimation of height–diameter curve using the allometric model. These features enable us to combine the allometric model with Hirata’s vertical angle-count sampling or growth models. In conclusion, the allometric model would be one of the most practical and convenient approaches for estimating the height–diameter relationship of even-aged pure stands.     

Effects of chronic acid fog exposure with soil acidification or nitrogen loading on nutrient status in Abies firma seedlings

To clarify the nutrient status in momi fir (Abies firma Sieb. et Zucc.) seedlings under complex stress conditions of acid fog with soil acidification or nitrogen loading, we exposed seedling shoots to simulated acid fog (pH 3) and simultaneously loaded the soil with acid or excess nitrogen for 17 months. Proton and nitrogen loading reduced K concentration in soil, but these treatments had little effect on the nutrient status of fine roots in momi fir seedlings. Acid fog exposure resulted in reduced concentrations of Mg, Al, and Fe in current-year needles and Mg, Al, Cu, Fe, and Zn in 1-year-old needles. The complex effects of acid fog exposure with proton or nitrogen loading on nutrient status were relatively slight. However, elements such as Al and Cu notably reflect the effects of proton loading. These results show that the nutrient status of trace elements, rather than major elements, in needles of momi fir seedlings is sensitive to exposure to acid fog or proton loading.