Use of serology and real time PCR to control an outbreak of bovine brucellosis at a dairy cattle farm in the Nile Delta region,Egypt

Background

Bovine brucellosis remains one of the most prevalent zoonotic infections affecting dairy cattle in developing countries where the applied control programs often fail. We analyzed the epidemiologic pattern of bovine brucellosis in a dairy cattle herd that showed several cases of abortions after regular vaccination with RB51 (B. abortus vaccine). In 2013 thirty dairy cows, from a Holstein-Friesian dairy herd with a population of 600 cattle, aborted five months post vaccination by a regular RB51 vaccine. Blood samples were drawn from milking cows and growing heifers, as well as heifers and cows pregnant up to 6 months. These samples were collected in June 2013 (n?=?257) and May 2014 (n?=?263) and were tested by real time (rt)-PCR as well as serological tests, in particular Rose Bengal Test (RBT), Enzyme-Linked Immunosorbent Assays (ELISA) and Fluorescence Polarization Assay. Tissue specimens were also collected from an aborted fetus and cultured. Isolates were subjected to bacteriological typing tests at the genus and species levels.

Results

Five months post vaccination with RB51 vaccine, Brucella (B.) DNA was detected in blood samples of cows by rt-PCR. The serological tests also revealed the spread of Brucella field strains within the herd in 2013. Four Brucella isolates were recovered from specimens collected from the aborted fetus. These isolates were typed as follows: one B. abortus RB51 vaccine strain and three isolates of B. abortus field strain. The seropositive cows with positive rt-PCR might indicate an infection by the Brucella field strain; while the positive rt-PCR results from seronegative animals may either be due to circulating RB51 vaccine DNA in vaccinated animals or to circulating field strain in infected animals before seroconversion.

Conclusion

The results herein suggest that PCR can be a good supplementary tool in an outbreak situation, if an assay is available that can differentiate vaccine and field strains with a high analytical sensitivity. We recommend using RBT and ELISA in parallel in outbreak situations, to identify as many infected animals as possible during the initial screenings. This test procedure should be repeated for at least three successive negative tests, with one month interval.

     

Zum Auftreten und zur Bekämpfung von Erdbeerschädlingen in Norddeutschland

Zusammenfassung Auf Grund seiner ausgezeichneten Tiefenwirkung und einer noch ausreichenden Dauerwirkung hat sich der Oleo-Phosphorsäureester in Versuchen gegen die Erdbeermilbe und in einem praktischen Einsaß gegen einen Erdbeerwickler als brauchbares Akarizid bzw. Insektizid erwiesen. Er wird daher auf Grund der weiteren guten Erfahrungen mit dieser Wirkstoffzubereitung im Kern- und Steinobstbau auch gegen andere wichtige Erdbeerschädlinge, insbesondere gegen Rote Spinne und Erdbeerblattlaus als wichtigen Virusüberträger, empfohlen. Der Oleo-Phosphorsäureester wird zu einer Art Universalmittel, wenn durch ihn auch noch Erdbeerstengel- und-blütenstecher erfaßt werden, vielleicht sogar auch parasitische Nematoden (Stengel- und Blattä lchen). Gegen freilebende (ektoparasitische) Nematoden werden vorerst weiterhin nur die Spezialmittel zur Bodenentseuchung in Betracht kommen.Eine einmalige Sprißung, etwa zehn Tage vor der Erdbeerblüte, mit Folidol-Öl 0,5%, 10001 je ha, und eine weitere Sprißung bald nach der Ernte mit 2000 I je ha werden daher im allgemeinen als ausreichend für die Bekämpfung tierischer Schädlinge im Erdbeeranbau betrachtet. Nur gegen die Blatt- und Stengelälchen wird noch eine zusäßliche Behandlung bei Blattaustrieb im Frühjahr notwendig sein.Hygienische Bedenken bestehen zunächst bei dem Einsaß des Oleo-Phosphorsäureesters vor der Erdbeerblüte nicht; in umfangreichen Testen konnte keine merkliche Geschmacksbeeinflussung durch den Wirkstoff festgestellt werden. Auch die Karenzzeit (etwa 14 Tage) dürfte bei rechtzeitigem Einsaß vor der Blüte mit mindestens 6 Wochen bis zur Ernte reichlich bemessen sein. Nachbarkulturen, die früh geerntet werden, z. B. Frühgemüse, dürfen vom Sprißstrahl oder von Abtrift selbstverständlich nicht betroffen werden.Thiodan wird als Mittel gegen die Erdbeermilbe und andere Erdbeerschädlinge kaum in Betracht kommen, da es bei einer Vorblütenspritzung eine schon merkliche Geschmacksbeeinflussung der Erdbeerfrüchte hinterlä ßt.     

Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses

Viruses in the genus Mastrevirus (family Geminiviridae), including those infecting sugarcane, have natural geographical ranges almost exclusively restricted to Africa and the Indian Ocean islands off the African coast. Only sugarcane white streak virus (SWSV) in Barbados and sugarcane striate virus (SStrV) in Florida and Guadeloupe are known to infect a few sugarcane varieties in the Western Hemisphere. In this study, PCR assays were developed to detect these two viruses in sugarcane. Five hundred and seventy-one DNA samples from Saccharum species and interspecific hybrids from the Miami World Collection of sugarcane and related grasses were tested for the presence of SStrV and SWSV by PCR. No variety was found infected by SWSV but SStrV was detected in 19 varieties. PCR data were confirmed by sequencing amplified fragments (248 bp). These fragments shared 93%–100% nucleotide identity with SStrV sequences from the GenBank database. SStrV isolates were distributed in six phylogenetic groups, including the four strains of the virus. Most varieties infected by SStrV originated from Asia, thus confirming a previous hypothesis stating that this virus originated from this continent. Absence of SStrV in commercial sugarcane in Florida also suggested that this virus has not been spread in this location, while infected plants have been present for several decades.     

Fine‐scale habitat partitioning of Chilean and Peale's dolphins and their overlap with aquaculture

1. Predictive species distribution models (SDMs) have become powerful tools to determine habitat use patterns of mobile marine predators and their spatial overlap with potentially impacting anthropogenic activities.
2. This study used SDMs to investigate fine‐scale habitat use patterns of two poorly known and broadly sympatric coastal delphinids, Chilean dolphins (Cephalorhynchus eutropia) and Peale's dolphins (Lagenorhynchus australis), and their spatial interactions with intense aquaculture farming activities in the Chiloé archipelago, southern Chile.
3. A long‐term dataset (2002–2012) of boat‐based dolphin sightings and concurrently in situ collected environmental and anthropogenic variables was analysed using binomial Generalized Additive Models to investigate ecological drivers of each species' fine‐scale distribution and to predict dolphin occurrence spatially.
4. Chilean dolphins preferred shallow (<30 m deep), turbid waters, close to shore (<500 m) and river mouths which often placed them in sheltered bays and channels used intensively by shellfish farms. Peale's dolphins were also found in shallow waters but occurred over a wider range of conditions along more open or exposed coastlines. Both species had to navigate extensive salmon and shellfish farming sites to transit between areas of important habitat.
5. Sightings and predicted occurrence maps showed a clear pattern of spatial habitat partitioning between species, which remained stable across the 11 year study period. The identification of important habitat for Chilean dolphins warrants the consideration of spatially explicit conservation measures to limit the potential effects of overlapping salmon and shellfish farming.
6. The observed differences in ecological plasticity of the two sympatric species should be considered when evaluating and mitigating the effects of environmental change and ongoing anthropogenic pressures on their nearshore habitat. The estimated species–environment relationships could also be used to predict where dolphin habitat and anthropogenic activities are most likely to overlap in other parts of the species' ranges.

     

Sulfur in soils

Sulfur (S) deficiency of crops, which has been reported with increasing frequency over the past two decades on a worldwide scale, is a factor that reduces yield and affects the quality of harvested products. Especially in Western European countries, incidence of S deficiency has increasingly been reported in Brassicaceae. For this reason, more attention should be paid to the optimization of S‐fertilizer application, in order to cover plant S requirements whilst minimizing environmental impacts. In soils, S exists in inorganic and organic forms. While sulfate (SO ), which is a direct S source for plants, contributes up to 5% of total soil S, generally more than 95% of soil S are organically bound. Organic S is divided into sulfate ester and carbon‐bonded S. Although not directly plant‐available, organically bound S may potentially contribute to the S supply of plants, especially in deficiency situations. Sulfur turnover involves both biochemical and biological mineralization. Biochemical mineralization, which is the release of SO from the ester sulfate pool through enzymatic hydrolysis, is controlled by S supply, while the biological mineralization is driven by the microbial need for organic C to provide energy.     

Depletion of non‐exchangeable NH$ _4^+ $ at the root–soil and hyphae–soil interface of VA mycorrhizal maize (Zea mays) and parsley (Petroselinum sativum)

Mobilization of non‐exchangeable ammonium (NH ) by hyphae of the vesicular‐arbuscular mycorrhizal (VAM) fungus Glumus mosseae was studied under controlled experimental conditions. Maize (Zea mays) and parsley (Petroselinum sativum) were grown either alone or in symbiosis with Glomus mosseae in containers with separated compartments for roots and hyphal growth. In one experiment, ¹⁵NH was added to the soil to differentiate between the native non‐exchangeable NH and the non‐exchangeable NH derived from N fertilization. Non‐exchangeable NH was mobilized by plant growth. Plant dry weight and N uptake, however, were not significantly influenced by mycorrhizal colonization of the roots. The influence of root infection with mycorrhizal fungus on the mobilization of non‐exchangeable NH was negligible. In the hyphal compartment, hyphal uptake of N resulted in a decrease of NH in the soil solution and of exchangeable NH . However, the NH concentration was still too high to permit the release of non‐exchangeable NH . The results demonstrate that, in contrast to roots, hyphae of VAM fungi are not able to form a non‐exchangeable‐NH depletion zone in the adjacent soil. However, under conditions of a more substantial depletion of the exchangeable NH in the mycorrhizal sphere (e.g., with longer growth), an effect of mycorrhiza on the non‐exchangeable NH might be found.     

Metabolomic analysis of Ranunculus spp. as potential agents involved in the etiology of equine grass sickness

Identification of toxic or harmful agents continues to be a key goal in agricultural chemistry. This paper reports a metabolomic analysis of Ranunculus repens and related species, which were recently postulated to be cocausative agents in the etiology of equine grass sickness (EGS). Specifically, samples collected at EGS sites were compared with those from non-EGS sites. Furthermore, interspecific and seasonal variations and the species' response to edaphic and climatic factors were investigated. (1)H NMR spectroscopy in combination with multivariate data analysis was applied to the crude methanol extracts of the Ranunculus samples, as well as their chloroform fractions. Samples from EGS sites were significantly different from control samples. The metabolite composition varied greatly between different Ranunculus species. No significant changes could be observed between samples collected in different seasons. This work provides strong evidence that Ranunculus is involved in the etiology of EGS and has implications for agricultural management of pastures.     

Diurnal Macronutrients Uptake Patterns by Lettuce Roots under Various Light and Temperature Levels

In order to reduce nutrient wastes to the environment the supply should be in accordance to the demand for these. Two experiments were conducted to study and quantify the effect of temperature, irradiance, and plant age on the uptake of nitrate (NO₃^?), ammonium (NH₄⁺), dihydrogen phosphate ion (H₂PO₄^?), potassium (K⁺), calcium (Ca²⁺), magnesium (Mg²⁺), and sulfate (SO₄²). In the first experiment, various levels of temperature and irradiance were applied to plants in a growth chamber, while in the second experiment the uptake was studied along the crop season under greenhouse conditions. The uptake rates were calculated at 2-hour intervals through sampling the nutrient solution and analyzing it by inductively coupled plasma atomic emission spectrometry (ICP-AES). Increasing light and temperature enhance the uptake rates, while the rates decrease with plant age. Nitrogen absorption was similar during the day as during the night. No differences were found in the absorption of H₂PO₄^?, K⁺, Ca²⁺, Mg²⁺, and SO₄^2? between day and night. Nitrate absorption was found to have a positive correlation with the absorption of all the ions except for NH₄⁺.     

Der Bulk-Stomata-Widerstand von Ackerbohnen und seine Abhängigkeit vom Bodenwassergehalt

Bulk stomatal resistance of Vicia faba and its dependence on soil water content Bulk stomatal resistance of beans (Vicia faba L.,) as a function of soil water content was estimated for 41 days by comparison of potential transpiration, determined from meteorological data, and actual transpiration, determined from soil water losses. The resistance of beans is about 46 s/m if soil water content is above 70 % of available field capacity and increases strongly in dryer situations. This behaviour can be described by an exponential function.