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1.
Bayesian analysis via Gibbs sampling, restricted maximum likelihood (REML), and Method R were used to estimate variance components for several models of simulated data. Four simulated data sets that included direct genetic effects and different combinations of maternal, permanent environmental, and dominance effects were used. Parents were selected randomly, on phenotype across or within contemporary groups, or on BLUP of genetic value. Estimates by Bayesian analysis and REML were always empirically unbiased in large data sets. Estimates by Method R were biased only with phenotypic selection across contemporary groups; estimates of the additive variance were biased upward, and all the other estimates were biased downward. No empirical bias was observed for Method R under selection within contemporary groups or in data without contemporary group effects. The bias of Method R estimates in small data sets was evaluated using a simple direct additive model. Method R gave biased estimates in small data sets in all types of selection except BLUP. In populations where the selection is based on BLUP of genetic value or where phenotypic selection is practiced mostly within contemporary groups, estimates by Method R are likely to be unbiased. In this case, Method R is an alternative to single-trait REML and Bayesian analysis for analyses of large data sets when the other methods are too expensive to apply. 相似文献
2.
Vishwajit S. Chowdhury Yoshimitsu Ouchi Guofeng Han Hatem M. Eltahan Shogo Haraguchi Takuro Miyazaki Jun-ichi Shiraishi Toshihisa Sugino Takashi Bungo 《Animal Science Journal》2021,92(1):e13578
We examined the effects of oral administration of L-citrulline (L-Cit) on plasma metabolic hormones and biochemical profile in broilers. Food intake, water intake, and body temperature were also analyzed. After dual oral administration (20 mmol/head/administration) of L-Cit, broilers were exposed to a high ambient temperature (HT; 30 ± 1°C) chamber for 120 min. Oral administration of L-Cit reduced (p < .001) rectal temperature in broilers. Food intake was increased (p < .05) by heat stress, but it was reduced (p < .05) by L-Cit. Plasma levels of 3,5,3′-triiodothyronine, which initially increased (p < .0001) due to heat stress, were reduced (p < .01) by oral administration of L-Cit. Plasma insulin levels were increased by heat exposure (p < .01) and oral L-Cit (p < .05). Heat stress caused a decline (p < .05) in plasma thyroxine. Plasma lactic acid (p < .05) and non-esterified fatty acids (p < .01) were increased in L-Cit-treated heat-exposed broilers. In conclusion, our results suggest that oral L-Cit can modulate plasma concentrations of major metabolic hormones and reduces food intake in broilers. 相似文献
3.
4.
Yuko?FujiwaraEmail author Yoshihisa?Fujii Yutaka?Sawada Shogo?Okumura 《Journal of Wood Science》2004,50(1):35-40
Japanese oak and Japanese beech were sanded by hand with abrasive papers of varying grit number. Two three-dimensional parameters selected to characterize their surface roughness – one parameter for the distribution of roughness-profile peaks and the other for the relative area of the roughness-profile peaks above the threshold height – were compared against tactile roughness. The parameters were obtained from roughness profiles as determined by a robust Gaussian regression filter (RGRF) using seven cutoffs. The RGRF filtering process was adjusted specifically for the evaluation of wood surface roughness. Except for a cutoff wavelength of 0.25mm, the RGRF lent itself well to the determination of roughness profiles. No distortion of roughness profiles occurred around deep valleys, and there was a good correlation between the parameters and tactile roughness.Part of this study was presented at the 2002 Kansai Branch Office lecture meeting of the Japan Society for Precision Engineering, Kyotanabe, August 2002 相似文献
5.
Understory individuals were found to form patches in a 100-year-old deciduous broad-leaved forest. The closed forest canopy
was uniform, and so the light conditions at various locations across the forest floor differed little after the leaf flush
of the overstory. To explain the distribution pattern in the understory, a hypothesis was proposed: in spring, the forest
floor is divided into patches according to the timing of leaf flush of the overstory individuals, and the light conditions
are more favorable for understory plants under the crowns of trees with later-flushing leaves. In the plot, three groups of
early, intermediate, and late, were recognized in the overstory concerning the timing of leaf flush. As for the start of leaf
flush, a difference of 31.6 days was recognized among tree species, and for the end of leaf flush, a difference of 40.3 days.
In the spring of 1998, the relative photosynthetic-photon-flux density under an intensively studiedCastanea crenata tree (late-flushing species) usually showed higher values than that under a similarly studiedAcer mono tree (early-flushing species). Analysis of the spatial-distribution pattern using Morisita’s1δ index revealed that the understory community had an aggregated distribution. In the overstory, the late- and the intermediate-flushing-species
groups showed aggregated distributions, while the early-flushing-species group showed random distribution. Spatial correlation
between the understory and the overstory was analyzed by using Morisita’sRδ index. The distribution of whole understory community spatially co-occurred with that of the late-flushing-species group
of the overstory. In contrast, the understory community was less developed below the members of the early-flushing-species
group of the overstory. We consider that the data presented here support our hypothesis, and we suggest that the growth and
survival of understory individuals were promoted in the places receiving light for long periods in spring. 相似文献
6.
Fumiko SUZUTA Kumiko KIMURA Ryo URAKAWA Yukio KUSUDA Shogo TANAKA Yasuko HANAFUSA Makoto HARITANI 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2015,77(8):1029-1031
This report presents a new case of mucormycosis encountered in penguin characterized by morphological variation of hyphae and presence of sporangia with numerous sporangiospores. A 4.5-year-old Magellanic penguin (Spheniscus magellanicus) died after exhibiting anorexia, poor nutritional condition and dyspnea. Multiple nodular lesions were observed in the thoracic and abdominal regions. Histopathologically, hyphae of various sizes were seen in the lungs, air sac and nodular lesions. Myriad sporangiospores and several sporangia were observed in/around the bronchi or parabronchi. The very narrow and short hyphae in the nodules were not consistent with the characteristics of Mucorales. However, for most hyphae, including those in the nodules, sporangiospores and sporangia, immunohistochemistry revealed Mucorales-positive reactions. In addition, these fungi were identified as Rhizomucor pusillus by gene
analysis. 相似文献
7.
Kimiko HONSHO Michiko HIROSE Masanori HATORI Lubna YASMIN Haruna IZU Shogo MATOBA Sumie TOGAYACHI Hiroyuki MIYOSHI Tadashi SANKAI Atsuo OGURA Arata HONDA 《The Journal of reproduction and development》2015,61(1):13-19
Quality evaluation of pluripotent stem cells using appropriate animal models needs to be improved for human regenerative medicine. Previously, we demonstrated that although the in vitro neural differentiating capacity of rabbit induced pluripotent stem cells (iPSCs) can be mitigated by improving their baseline level of pluripotency, i.e., by converting them into the so-called “naïve-like” state, the effect after such conversion of rabbit embryonic stem cells (ESCs) remains to be elucidated. Here we found that naïve-like conversion enhanced the differences in innate in vitro differentiation capacity between ESCs and iPSCs. Naïve-like rabbit ESCs exhibited several features indicating pluripotency, including the capacity for teratoma formation. They differentiated into mature oligodendrocytes much more effectively (3.3–7.2 times) than naïve-like iPSCs. This suggests an inherent variation in differentiation potential in
vitro among PSC lines. When naïve-like ESCs were injected into preimplantation rabbit embryos, although they contributed efficiently to forming the inner cell mass of blastocysts, no chimeric pups were obtained. Thus, in vitro neural differentiation following naïve-like conversion is a promising option for determining the quality of PSCs without the need to demonstrate chimeric contribution. These results provide an opportunity to evaluate which pluripotent stem cells or treatments are best suited for therapeutic use. 相似文献
8.
Use of genomic recursions and algorithm for proven and young animals for single‐step genomic BLUP analyses – a simulation study 下载免费PDF全文
B.O. Fragomeni D.A.L. Lourenco S. Tsuruta Y. Masuda I. Aguilar I. Misztal 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2015,132(5):340-345
The purpose of this study was to examine accuracy of genomic selection via single‐step genomic BLUP (ssGBLUP) when the direct inverse of the genomic relationship matrix ( G ) is replaced by an approximation of G ?1 based on recursions for young genotyped animals conditioned on a subset of proven animals, termed algorithm for proven and young animals (APY). With the efficient implementation, this algorithm has a cubic cost with proven animals and linear with young animals. Ten duplicate data sets mimicking a dairy cattle population were simulated. In a first scenario, genomic information for 20k genotyped bulls, divided in 7k proven and 13k young bulls, was generated for each replicate. In a second scenario, 5k genotyped cows with phenotypes were included in the analysis as young animals. Accuracies (average for the 10 replicates) in regular EBV were 0.72 and 0.34 for proven and young animals, respectively. When genomic information was included, they increased to 0.75 and 0.50. No differences between genomic EBV (GEBV) obtained with the regular G ?1 and the approximated G ?1 via the recursive method were observed. In the second scenario, accuracies in GEBV (0.76, 0.51 and 0.59 for proven bulls, young males and young females, respectively) were also higher than those in EBV (0.72, 0.35 and 0.49). Again, no differences between GEBV with regular G ?1 and with recursions were observed. With the recursive algorithm, the number of iterations to achieve convergence was reduced from 227 to 206 in the first scenario and from 232 to 209 in the second scenario. Cows can be treated as young animals in APY without reducing the accuracy. The proposed algorithm can be implemented to reduce computing costs and to overcome current limitations on the number of genotyped animals in the ssGBLUP method. 相似文献
9.
Soichi Tanaka Keiichiro Shiraga Yuichi Ogawa Yoshihisa Fujii Shogo Okumura 《Journal of Wood Science》2014,60(2):111-116
The use of an effective medium theory is important when accurately measuring wood density using millimeter and terahertz wave techniques. To confirm the applicability of this theory to the evaluation of wood density, the relative permittivity and dielectric loss of oven-dry flat-sawn specimens of 11 different wood species were measured in a frequency range of 0.15–1.2 THz using a transmission measurement system for terahertz time-domain spectroscopy. A mixture model based on the effective medium theory well explained the density dependence of relative permittivity over the entire frequency range, while it did not fully explain that of dielectric loss, especially for higher frequencies. This indicates that wood scatters the terahertz wave with a wavelength close to the transverse sectional dimensions of the pores in wood in the same way as Mie scattering. It was found from the dielectric loss spectrum of wood substance that the frequency around 0.23 THz was preferable for the nondestructive evaluation of wood. 相似文献
10.
Soichi Tanaka Keiichiro Shiraga Yuichi Ogawa Yoshihisa Fujii Shogo Okumura 《Journal of Wood Science》2014,60(3):194-200
To clarify the effect of pore conformation on the dielectric anisotropy of wood, the relative permittivity along the longitudinal and tangential axes of flat-sawn oven-dry specimens of 12 different wood species was measured using terahertz time-domain transmission spectroscopy and compared with the values calculated using the eigenvalue problem for two-dimensional photonic crystals. The measured dielectric anisotropy, which is the ratio of the relative permittivity along longitudinal axis to that along the tangential axis, was well explained by the calculated value. It was concluded that the ratio of tangential to radial widths of wood pores affects the relative permittivity along the tangential axis, and that the dielectric anisotropy decreased with an increase in the ratio. This discussion can also be applied to the relative permittivity in frequencies below 0.15 THz. These findings show promise as a new method for evaluating the porous structure of wood. 相似文献