A spatial hazard model for cluster detection on continuous indicators of disease: application to somatic cell score

Methods for spatial cluster detection dealing with diseases quantified by continuous variables are few, whereas several diseases are better approached by continuous indicators. For example, subclinical mastitis of the dairy cow is evaluated using a continuous marker of udder inflammation, the somatic cell score (SCS). Consequently, this study proposed to analyze spatialized risk and cluster components of herd SCS through a new method based on a spatial hazard model. The dataset included annual SCS for 34 142 French dairy herds for the year 2000, and important SCS risk factors: mean parity, percentage of winter and spring calvings, and herd size. The model allowed the simultaneous estimation of the effects of known risk factors and of potential spatial clusters on SCS, and the mapping of the estimated clusters and their range. Mean parity and winter and spring calvings were significantly associated with subclinical mastitis risk. The model with the presence of 3 clusters was highly significant, and the 3 clusters were attractive, i.e. closeness to cluster center increased the occurrence of high SCS. The three localizations were the following: close to the city of Troyes in the northeast of France; around the city of Limoges in the center-west; and in the southwest close to the city of Tarbes. The semi-parametric method based on spatial hazard modeling applies to continuous variables, and takes account of both risk factors and potential heterogeneity of the background population. This tool allows a quantitative detection but assumes a spatially specified form for clusters.     

Evaluating evaporation from field crops using airborne radiometry and ground-based meteorological data

Summary Airborne measurements of reflected solar and emitted thermal radiation were combined with ground-based measurements of incoming solar radiation, air temperature, windspeed, and vapor pressure to calculate instantaneous evaporation (LE) rates using a form of the Penman equation. Estimates of evaporation over cotton, wheat, and alfalfa fields were obtained on 5 days during a one-year period. A Bowen ratio apparatus, employed simultaneously, provided ground-based measurements of evaporation. Comparison of the airborne and ground techniques showed good agreement, with the greatest difference being about 12% for the instantaneous values. Estimates of daily (24 h) evaporation were made from the instantaneous data. On three of the five days, the difference between the two techniques was less than 8%, with the greatest difference being 25%. The results demonstrate that airborne remote sensing techniques can be used to obtain spatially distributed values of evaporation over agricultural fields.     

Quantitative review of the effects of environmental temperature on food intake, egg output and energy balance in laying pullets

1. Data from 30 published experiments have been analysed to examine the relationships between environmental temperature and the long-term, adapted responses of laying pullets, measured as metabolisable energy intake, egg output and body weight change. Heat production was also estimated indirectly from the other three variables. 2. The majority of experiments employed White Leghorns, but there were 8 large trials in which brown crossbred pullets had been compared directly with White Leghorns. These trials were used to estimate differences in energy intake and heat output between brown and white birds. 3. A total of over 26,000 birds was involved in the analysis. Individual trials varied in scale from 9 birds to 2,280 birds per treatment and in duration from 8 to 61 weeks. The constant temperatures investigated ranged from 10 degrees C to 34 degrees C, but there were no data for brown pullets beyond 30 degrees C. 4. The relationship between temperature and metabolisable energy intake is curvilinear, with food intake declining more steeply as ambient temperature approaches body temperature. Adapted heat production per bird is also a curvilinear function of temperature, tending towards a value of zero when extrapolated to the point at which ambient temperature equals normal body temperature. However no satisfactory data are available for fully adapted responses in the range 34 to 42 degrees C because egg production declines continuously when these temperatures are maintained for long periods. 5. When energy intake and heat output are expressed as functions of metabolic body size (kg 0.75) they can be represented as linear functions of temperature within the range 15 to 30 degrees C, but the slope must change outside this range. 6. It is calculated that the energy available for production is at a maximum at 23 degrees C for brown birds and at 24 degrees C for White Leghorns. Gross energetic efficiency is at a maximum at 30 degrees C, but egg output is reduced at this temperature. The optimum operating temperature for laying houses will depend upon the local cost of modifying ambient temperature and on the cost of supplying diets of appropriate protein content.     

Lupine induced "crooked calf disease" in Washington and Oregon: identification of the alkaloid profiles in Lupinus sulfureus, Lupinus leucophyllus, and Lupinus sericeus

Several lupines (Lupinus spp.) present on western U.S. rangelands contain alkaloids that are teratogenic to livestock and cause congenital birth defects in calves (crooked calf disease). Periodically, large losses of calves due to lupine-induced "crooked calf disease" occur in northern Oregon and eastern Washington state. Five lupine populations from this area representing three species (L. leucophyllus, L. sulfureus, and L. sericeus) were evaluated taxonomically and by gas chromatography/mass spectrometry, and the major alkaloids in each lupine species were identified. The teratogenic alkaloid anagyrine was present in both of the lupine species responsible for the high outbreaks in east-central Washington and northeastern Oregon. However, the alkaloid profiles of the two lupines identified as L. leucophyllus were dissimilar, as were the alkaloid profiles of the two lupines identified as L. sulfureus. Botanical classification is not sufficient to determine potential teratogenicity, and it must be followed by chemical characterization to determine risk to livestock.     

The high biodiversity and vulnerability of two Mediterranean bathyal seamounts support the need for creating offshore protected areas

1. Seamounts host some of the most important deep-sea ecosystems. The unique environmental characteristics of seamounts sustain rich biological hot spots, which, in recent times, have suffered the effects of intense fishing pressure.
2. Biodiversity and vulnerability data are extremely scarce for Mediterranean seamounts, and this, in addition to the complex socio-economic and juridical status of offshore sites, results in difficulty in identifying the best management strategies.
3. An extensive remotely operated vehicle (ROV) survey was used to characterize the megabenthic assemblages of the summits of two upper bathyal seamounts, Ulisse and Penelope (Ligurian Sea, north-west Mediterranean Sea). The biogeographic implications of these findings and the possible environmental factors favouring the occurrence of these communities are discussed.
4. High densities of abandoned, lost, or otherwise discarded fishing gear (mainly longlines) and a reduction in the average size of the fragile and slow-growing habitat-forming gorgonian Callogorgia verticillata indicate the occurrence of high levels of anthropogenic impacts on the summit regions, which are fishing grounds for artisanal and recreational fishers.
5. The recovery of fishing data describing the first catches in the 1970s proved to be useful in inferring the short- and long-term effects of fishing practices in these previously unexploited offshore areas. In particular, the local extinction of demersal top predators, subjected to exceptional catches nearly 50 years ago, highlights the slow recovery rate of such species.
6. Criteria defining vulnerability are discussed for the two study areas, and specific conservation actions, including the creation of regulated protected areas, are proposed.

     

Influence of Temperament Score and Handling Facility on Stress,Reproductive Hormone Concentrations,and Fixed Time AI Pregnancy Rates in Beef Heifers

The objectives were (i) to evaluate the effect of temperament, determined by modified 2‐point chute exit and gait score, on artificial insemination (AI) pregnancy rates in beef heifers following fixed time AI and (ii) to determine the effect of temperament on cortisol, substance‐P, prolactin and progesterone at initiation of synchronization and at the time of AI. Angus beef heifers (n = 967) at eight locations were included in this study. At the initiation of synchronization (Day 0 = initiation of synchronization), all heifers received a body condition score (BCS), and temperament score (0 = calm; slow exit and walk or 1 = excitable; fast exit or jump or trot or run). Blood samples were collected from a sub‐population of heifers (n = 86) at both synchronization initiation and the time of AI to determine the differences in serum progesterone, cortisol, prolactin and substance‐P concentrations between temperament groups. Heifers were synchronized with 5‐day CO‐Synch+ controlled internal drug release (CIDR) protocol and were inseminated at 56 h after CIDR removal. Heifers were examined for pregnancy by ultrasound 70 days after AI to determine AI pregnancy. Controlling for synchronization treatment (p = 0.03), facility design (p = 0.05), and cattle handling facility design by temperament score interaction (p = 0.02), the AI pregnancy differed between heifers with excitable and calm temperament (51.9% vs 60.3%; p = 0.01). The alley‐way with acute bends and turns, and long straight alley‐way had lower AI pregnancy rate than did the semicircular alley‐way (53.5%, 56.3% and 67.0% respectively; p = 0.05). The serum hormone concentrations differed significantly between different types of cattle handling facility (p < 0.05). The cattle handling facility design by temperament group interactions significantly influenced progesterone (p = 0.01), cortisol (p = 0.01), prolactin (p = 0.02) and substance‐P (p = 0.04) both at the initiation of synchronization and at the time of AI. Inter‐ and intra‐rater agreement for temperament scoring were moderate and good (Kappa = 0.596 ± 0.07 and 0.797 ± 0.11) respectively. The predictive value for calm and pregnant to AI was 0.87, and excited and non‐pregnant to AI was 0.76. In conclusion, the modified 2‐point temperament scoring method can be used to identify heifers with excitable temperament. Heifers with excitable temperament had lower AI pregnancy. Further, cattle handling facility design influenced the temperament and AI pregnancy.     

A synthesis of the life history and ecology of juvenile Pacific herring in Prince William Sound,Alaska

Physical and biological variables affecting juvenile Pacific herring (Clupea pallasi) in Prince William Sound (PWS) from 1995 to 1998 were investigated as part of a multifaceted study of recruitment, the Sound Ecosystem Assessment (SEA) program. Though more herring larvae were retained in eastern PWS bays, ages‐0 and ‐1 herring used bays throughout PWS as nursery areas. Water transported into PWS from the Gulf of Alaska (GOA) contributed oceanic prey species to neritic habitats. Consequently, variations in local food availability resulted in different diets and growth rates of herring among bays. Summer food availability and possible interspecific competition for food in nursery areas affected the autumn nutritional status and juvenile whole body energy content (WBEC), which differed among bays. The WBEC of age‐0 herring in autumn was related to over‐winter survival. The limited amount of food consumption in winter was not sufficient to meet metabolic needs. The smallest age‐0 fish were most at risk of starvation in winter. Autumn WBEC of herring and winter water temperature were used to model over‐winter mortality of age‐0 herring. Differences in feeding and energetics among nursery areas indicated that habitat quality and age‐0 survival were varied among areas and years. These conditions were measured by temperature, zooplankton abundance, size of juvenile herring, diet energy, energy source (GOA vs. neritic zooplankton), WBEC, and within‐bay competition.     

The persistence of infectivity of Tetracapsulabryosalmonae-infected water for rainbow trout, Oncorhynchus mykiss (Walbaum)

Proliferative kidney disease (PKD) is caused by the infection of susceptible salmonid fish with spores of the myxozoan Tetracapsula bryosalmonae , a parasite harboured and released by several species of bryozoans. Under natural conditions, PKD is a water-borne infection of fish, whose outcome and spatio-temporal dissemination depend on the viability of spores present in the water. In order to evaluate the duration of parasite infectivity, juvenile rainbow trout, Oncorhynchus mykiss , were exposed for 20 h to T. bryosalmonae -infected water at various times post-water collection or after different filtration procedures. When infected water was held in a temperature range of 14.5–17 °C for up to 14 days, PKD was transmitted to the fish only between 0 and 12 h post-water collection and its infectivity vanished between 12 and 24 h. Similarly, the infectivity of water passed through 25 μm but not through 1 μm mesh filters, and was lost in the material eluted from the 1 μm filtration membrane although the parasite's DNA was amplified from this material. The parasitic infectivity in water appears to be fragile and this may offer opportunities to decrease the impact of PKD in trout farms by the implementation of management procedures aimed at reducing the number of the bryozoan-holding surfaces located in the river, immediately upstream from these farms.