Fatty acid, triacylglycerol, phytosterol, and tocopherol variations in kernel oil of Malatya apricots from Turkey

The fatty acid, sn-2 fatty acid, triacyglycerol (TAG), tocopherol, and phytosterol compositions of kernel oils obtained from nine apricot varieties grown in the Malatya region of Turkey were determined ( P<0.05). The names of the apricot varieties were Alyanak (ALY), Cataloglu (CAT), C?loglu (COL), Hacihaliloglu (HAC), Hacikiz (HKI), Hasanbey (HSB), Kabaasi (KAB), Soganci (SOG), and Tokaloglu (TOK). The total oil contents of apricot kernels ranged from 40.23 to 53.19%. Oleic acid contributed 70.83% to the total fatty acids, followed by linoleic (21.96%), palmitic (4.92%), and stearic (1.21%) acids. The s n-2 position is mainly occupied with oleic acid (63.54%), linoleic acid (35.0%), and palmitic acid (0.96%). Eight TAG species were identified: LLL, OLL, PLL, OOL+POL, OOO+POO, and SOO (where P, palmitoyl; S, stearoyl; O, oleoyl; and L, linoleoyl), among which mainly OOO+POO contributed to 48.64% of the total, followed by OOL+POL at 32.63% and OLL at 14.33%. Four tocopherol and six phytosterol isomers were identified and quantified; among these, gamma-tocopherol (475.11 mg/kg of oil) and beta-sitosterol (273.67 mg/100 g of oil) were predominant. Principal component analysis (PCA) was applied to the data from lipid components of apricot kernel oil in order to explore the distribution of the apricot variety according to their kernel's lipid components. PCA separated some varieties including ALY, COL, KAB, CAT, SOG, and HSB in one group and varieties TOK, HAC, and HKI in another group based on their lipid components of apricot kernel oil. So, in the present study, PCA was found to be a powerful tool for classification of the samples.     

Combined use of hyperspectral VNIR reflectance spectroscopy and kriging to predict soil variables spatially

Hyperspectral visible near infrared reflectance spectroscopy (VNIRRS) and geostatistical methods are considered for precision soil mapping. This study evaluated whether VNIR or geostatistics, or their combined use, could provide efficient approaches for assessing the soil spatially and associated reductions in sample size using soil samples from a 32 ha area (800 × 400 m) in northern Turkey. Soil variables considered were CaCO₃, organic matter, clay, sand and silt contents, pH, electrical conductivity, cation exchange capacity (CEC) and exchangeable cations (Ca, Mg, Na and K). Cross-validation was used to compare the two approaches using all grid data (n = 512), systematic selections of 13, 25 and 50% of the data and random selections of 13 and 25% for calibration; the remaining data were used for validation. Partial least squares regression (PLSR) analysis was used for calibrating soil properties from first derivative VNIR reflectance spectra (VNIRRS), whereas ordinary-, co- and regression-kriging were used for spatial prediction. The VNIRRS-PLSR method provided better prediction results than ordinary kriging for soil organic matter, clay and sand contents, (R ² values of 0.56–0.73, 0.79–0.85, 0.65–0.79, respectively) and smaller root mean squared errors of prediction (values of 2.7–4.1, 37.4–43, 46.9–61, respectively). The EC, pH, Na, K and silt content were predicted poorly by both approaches because either the variables showed little variation or the data were not spatially correlated. Overall, the prediction accuracy of VNIRRS-PLSR was not affected by sample size as much as it was for ordinary kriging. Cokriging (COK) and regression kriging (RK) were applied to a combination of values predicted by VNIR reflectance spectroscopy and measured in the laboratory to improve the accuracy of prediction of the soil properties. The results showed that both COK and RK with VNIRRS estimates improved the predictions of soil variables compared to VNIRRS and OK. The combined use of VNIRRS and multivariate geostatistics results in better spatial prediction of soil properties and enables a reduction in sampling and laboratory analyses.     

Streptolysin-O/antibiotics adjunct therapy modulates site-specific expression of extracellular matrix and inflammatory genes in lungs of Rhodococcus equi infected foals

The addition of streptolysin-O (SLO) to the standard antibiotics regimen was shown to be superior to antibiotics alone after experimental infection of foals with Rhodoccocus equi (R. equi). The objective of this study is to investigate this response by determining the site-specific expression of extracellular matrix (ECM) and inflammatory response genes in biopsy samples taken from three distinct lung regions of the infected foals. Twenty-four foals were challenged by intrabronchial instillation of R. equi and assigned to four treatment groups: SLO/antibiotics adjunct therapy, antibiotics-only therapy (7.5 mg/kg clarithromycin and 5 mg/kg rifampin), SLO-only, and saline-only treatments. Treatments were administered twice daily for 16 days unless symptoms progressed to the point where the foals needed to be euthanized. Gene expressions were determined using custom-designed equine real-time qPCR arrays containing forty-eight genes from ECM remodeling and inflammation pathways. A non-parametric Wilcoxon signed-rank test for independent samples was applied to two pairs of time-matched comparison groups, SLO/antibiotics vs. antibiotics-only and SLO-only vs. saline-only, to document the significant differences in gene expressions within these groups. Several genes, MMP9, MMP2, TIMP2, COL1A1, COL12A1, ITGAL, ITGB1, FN1, CCL2, CCL3, CXCL9, TNFα, SMAD7, CD40, IL10, TGFB1, and TLR2, were significantly regulated compared to the unchallenged/untreated control foals. The results of this study demonstrate that enhancement of clinical responses by SLO is consistent with the changes in expression of critical genes in ECM remodeling and inflammatory response pathways.     

Genetic variability among breeding lines and cultivars of eggplant against Fusarium oxysporum f. sp. melongenae from Turkey

Seventy isolates of Fusarium oxysporum (Schlechtend: Fr.) f. sp. melongenae Matuo and Ishigami (Fomg), the causal agent of eggplant Fusarium wilt, were tested for their interaction with different lines and cultivars to determine whether there was race-specific interaction. Also, a total of 13 cultivars were tested under greenhouse conditions to evaluate the presence of resistance to Fusarium wilt. The disease severity (%) and the area under disease progress curve (AUDPC) for each of the Fomg isolates were calculated by scale values. Results showed that neither of the resistant lines (LS1934 and LS2436) exhibited wilting symptoms, whereas susceptible local cultivars (cvs. ‘Kemer’ and ‘Hadrian’) displayed severe disease symptoms. There was no significant variation in the virulence, indicating the occurrence of a race or races among 70 Fomg isolates tested on resistant lines and susceptible cultivars. This may indicate a genetically homogeneous population structure of Fomg in Turkey. The eggplant cultivars Amadeo, Anatolia, Angela, Brigitte, Corsica, Hawk, Koksal, Nouma, Sharapova and Yula exhibited various degrees of susceptibility to three virulent Fomg isolates, but disease severity for AGR-703 was significantly different and lower among the tested eggplant cultivars, as well as rootstocks. Therefore, it is considered as the most appropriate for rootstock purposes in eggplant cultivations where Fusarium wilt is present in the soil.     

Molecular characterization of <Emphasis Type="Italic">Bovine virus diarrhea viruses</Emphasis> species 2 (BVDV-2) from cattle in Turkey

Five BVDV species 2 (BVDV-2) isolates were detected from cattle in Turkey. Phylogenetic analysis was performed based on the 5′ untranslated regions (UTRs) and E2 coding gene regions, respectively. The isolates were closely related to BVDV-2a strains from North America and Canada used as references. This is the first report of the detection of BVDV-2 in naturally infected Turkish cattle. It is important to consider BVDV-2 for planning future BVDV control and vaccination programs in Turkey.     

Phenolic Compounds,Antioxidant Activity,Fatty Acids and Volatile Profiles of 18 Different Walnut (Juglans regia L.) Cultivars and Genotypes

The study was carried out to determine phenolic compounds, antioxidant activity, total lipids, saturated fatty acids, unsaturated fatty acids, and volatile organic compounds (VOCs) of 18 different walnut (Juglans regia L.) cultivars and genotypes grown in Usak province, Turkey. The biochemical compounds were identified for each cultivar and genotype and a comparative evaluation was carried out. The results showed that most of the biochemical compounds are significantly varying among each other (p?<?0.05). The existence and abundance of the biochemical compounds in the cultivars and genotypes have not only found to be a cause of differentiation, but they have been important parameters for the similarities among the cultivars and genotypes. Total phenolic content and antioxidant activity ranged from 750.67 to 1245.64?mg GAE ml^?1 and from 42.46 to 56.50% in kernels, respectively. The highest contents of the phenolic compounds were noted from gallic acid (11991?mg kg^?1), ellagic acid (1057.16?mg kg^?1), catechin (425.4?mg kg^?1), and rutin (216.6?mg kg^?1), as an average of all cultivars and genotypes. The highest lipid contents were noted from ‘Franquette’ and ‘Fernette’ as 64.28% and 63.26%, respectively, while the lowest content was noted from ‘Oguzlar 77’ (52.52%). A total of 42 VOCs were described from the 18 different walnut cultivars and genotypes. Overall, results showed that the phenolic profiles, fatty acids composition, and VOCs play an important role in similarities and diversities among the cultivars. According to the results, 7 different clusters were developed from the 18 cultivars and genotypes. Herein, ‘Fernor’, ‘Maras 18’, ‘Arslan Local Type’ and ‘Cisco’ cultivars were found to have the lowest biochemical compositions. The superior cultivars or genotypes, in terms of the abundance of the biochemical composition, were found to be ‘Gulizar Hanim Type’, ‘Lara’, ‘Pedro’, ‘Tulane’, ‘Fernette’, ‘Balkan’ and ‘Franquetta’, where they were found to develop 3 clusters by 1:3:3, respectively.

     

Intra‐annual patterns of coastal larval fish assemblages along environmental gradients in the northeastern Mediterranean

To date, little is known about the larval‐fish assemblages (LFAs) in the eastern Mediterranean. The purpose of this study is to investigate the intra‐annual variations of LFAs with an emphasis on the effects of physical, chemical, biological and meteorological conditions in the gulf of Iskenderun, which is a shallow (100 m maximum depth), semi‐enclosed bay located in the northeastern corner of the Mediterranean. The gulf is under the influence of offshore waters throughout the year. The study was based on an ichthyoplankton survey program performed at 28 stations over 12 months, between November 2009 and October 2010. During the study, a total of 11,411 larval individuals belonging to 177 taxa were sampled. The jackknife estimate of maximum species richness was 225 ± 19 for the study area. The maximum larval richness (84 species) and abundance (827 larvae/10 m²) values coincided with spring bloom in April. Gobiids dominated the ichthyoplankton of Iskenderun Bay by constituting 9% of species richness and 42% of total individuals. Four LFAs were identified which were in early winter (November to January), late winter (February and March), spring (April to June) and summer (July to October). The intra‐annual variations of richness, abundance and composition of ichthyoplankton were significantly correlated with the temperature and mesozooplankton biomass. The wind conditions and thermal stratification were also significantly correlated with the composition of LFAs. In conclusion, phenology of LFAs were formed under the influence of physical and tropho‐dynamic conditions in Iskenderun Bay, Northeastern Mediterranean.     

Effects of dietary <Emphasis Type="SmallCaps">l</Emphasis>-carnitine and chromium picolinate supplementations on performance and some serum parameters in rainbow trout (<Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis>)

An experiment was conducted to determine the effects of supplemental dietary l-carnitine, chromium picolinate (Cr-Pic) and their combination on growth performance and serum total protein, cholesterol, triglyceride and glucose of rainbow trout (Oncorhynchus mykiss). A total of 276 rainbow trout were randomly allocated to four groups. Fish (average initial body weight = 151 ± 1.69 g) were fed a basal diet without supplemental l-carnitine and chromium picolinate in the control group. The basal diet was supplemented with either 500 mg/kg l-carnitine, 1.6 mg/kg chromium picolinate or 500 mg/kg l-carnitine plus 1.6 mg/kg chromium picolinate for experimental groups 1 (C), 2 (Cr-Pic) and 3 (C + Cr-Pic), respectively. Fish were fed twice a day to apparent satiation for 58 days. Weight gain, growth rate, feed consumption and feed conversion ratio (feed/gain) were calculated for the whole period. At the end of the study, six fish were chosen randomly from each tank to represent the experiment and frozen at −20°C for subsequent dorsal muscle analysis. The results showed no significant differences in final body weight, weight gain or feed conversion ratio among groups. There were also no significant differences in serum total protein, cholesterol, triglyceride or glucose concentrations among groups. Significantly higher lipid concentration of dorsal muscle was observed in experimental groups 1 and 3. In conclusion, supplemental dietary l-carnitine, chromium picolinate and their combination have no beneficial effects on improving growth performance and feed conversion ratio in rainbow trout. However, dietary l-carnitine slightly increased lipid concentration in dorsal muscle of rainbow trout.     

Boron fertilization of Mediterranean aridisols improves lucerne (Medicago sativa L.) yields and quality

Abstract

Lucerne (Medicago sativa L.) is grown as a forage crop on many livestock farms. In calcareous soils in eastern Turkey, lucerne production requires boron (B) addition as the soils are naturally B deficient. Field experiments with four B-application rates (0, 1, 3, and 9 kg ha^?1 B) were conducted in 2005 and 2006 to determine the optimum economic B rate (OEBR), critical soil test and tissue B values for dry matter (DM) production for lucerne grown on B-deficient calcareous aridisols in eastern Turkey. Boron application increased yield at each site in both years of production. The OEBR and critical soil and tissue B content were not impacted by location. Averaged over the two years and three locations, the OEBR was 6.8 kg B ha^?1 with an average DM yield of 12.0 Mg ha^?1. The average soil B content at the OEBR was 0.89 mg kg^?1 while leaf and shoot tissue B content amounted to 51.8 and 35.5 mg kg^?1, respectively. Boron application decreased tissue calcium (Ca), zinc (Zn), and copper (Cu), and increased tissue nitrogen (N), phosphorus (P), potassium (K), magnesium (Mg), iron (Fe), and manganese (Mn). Tissue and soil B increased without impacting yield at B levels up to 9 kg ha^?1. We conclude that 7 kg ha^?1 B is sufficient to elevate soil test B levels from 0.11 to 0.89 mg kg^?1 and overcome B deficiency at each of the sites in the study. Similar studies with different soils and initial soil test B levels are needed to conclude if these critical soil and tissue values can be applied across the region.