Feed preferences in juvenile cod estimated by inert lanthanid markers – effects of moisture content in the feed

There are indications that low ingestion ratesof formulated feed may limit the growth ofearly juvenile fish, including cod. This hasparticularly been observed during the weaningperiod, when the fish must change from apresumably palatable live prey to usually a drydiet. The study of the physical properties ofthe diet seems to be an underestimated area ofresearch, compared to studies on thenutritional properties of the diet. In thisstudy we used lanthanide markers as a tool inestimating diet preferences for examining theeffect of dietary moisture content on ingestionrates in juvenile cod (0.8 g). Fishmeal-baseddiets were produced with five levels of water,giving diets with 35, 42, 54, 65 or 95% dryweight. Each diet was marked with a smallamount of a lanthanide or yttrium oxide. Thefish were hand fed on a mixture of these fivediets. Ingestion rates where then estimated bykilling 1/2 of the fish after one day and therest after four days of feeding. The whole fishwith gut content was homogenized and markercontent was measured by ICP-MS. The amountingested of each of the five diets could thenbe calculated from these figures. Despite thehigh variation in diet selection betweenindividuals the results clearly indicate ahigher intake of moist feed. This could becaused by a better palatability or to a higheravailability caused by a lower sinking rate ofthe moist feed.     

Bacteria and fungi on roots of different barley varieties (Hordeum vulgare L.)

Summary We investigated the abundance of bacteria and fungi on roots of different barley varieties grown in soil and in a nutrient solution. Measurements were made on the rhizoplane and, for soil-grown plants, also in the rhizosphere soil. Further, the influence of plant age was investigated. Barley variety, had a significant influence both for plants grown in soil and in the nutrient solution, and the effects were most pronounced on the rhizoplane. There were no significant differences among varieties in fungal hyphal lengths on the roots. Bacterial abundance on the rhizoplane was significantly decreased with increasing plant age. Varietal differences were maintained over different plant ages.     

Bacterial and fungal response to nitrogen fertilization in three coniferous forest soils

Forest soil carbon (C) pools may act as sinks for, or sources of, atmospheric carbon dioxide, while nitrogen (N) fertilization may affect the net exchange of C in forest ecosystems. Since all major C and N processes in soil are driven by soil microorganisms, we evaluated the effects of N fertilization on biomass and bacterial and fungal activity in soils from three Norway spruce forests with different climatic and N availability conditions. N deposition and net N mineralization were higher at the sites in southern Sweden than at the site in northern Sweden. We also studied the extent to which N fertilization altered the nutrient(s) limiting bacterial growth in soil. We found that on average microbial biomass was reduced by ～40% and microbial activity by ～30% in fertilized plots. Bacterial growth rates were more negatively affected by fertilization than fungal growth rates, while fungal biomass (estimated using the phospholipid fatty acid (PLFA) 18:2ω6,9) decreased more than bacterial biomass as a consequence of fertilization. The microbial community structure (indicated by the PLFA pattern) was changed by fertilization, but not in the same way at the three sites. Soil bacteria were limited by a lack of carbon in all forests, with the carbon limitation becoming more evident in fertilized plots, especially in the forests that had previously been the most N-limited ones. This study thus showed that the effects of N fertilization differed depending on the conditions at the site prior to fertilization.     

Coherent optical control of the quantum state of a single quantum Dot

Picosecond optical excitation was used to coherently control the excitation in a single quantum dot on a time scale that is short compared with the time scale for loss of quantum coherence. The excitonic wave function was manipulated by controlling the optical phase of the two-pulse sequence through timing and polarization. Wave function engineering techniques, developed in atomic and molecular systems, were used to monitor and control a nonstationary quantum mechanical state composed of a superposition of eigenstates. The results extend the concept of coherent control in semiconductors to the limit of a single quantum system in a zero-dimensional quantum dot.     

Bioavailability of DOC in leachates, soil matrix solutions and soil water extracts from beech forest floors

The biodegradability of dissolved organic carbon (DOC) in different fractions from the forest floor was studied. Soil leachate (SL, the soil solution in macropores which is freely drained from forest floor after rainfall), the soil matrix solution (SMS, the soil solution in meso-/micropores of the soil matrix), and soil water extracts (SWE) from two different beech forest floors were compared. Zero-tension and tension lysimeters were used to collect SL and SMS, respectively. Loss of DOC (during 21 days) and respiration of CO₂-C (during 7 days) were used as conventional measures of the availability of DOC. Bacterial production, measured using the leucine incorporation technique, and bacterial growth efficiency were also estimated. All methods were used to study differences in biodegradability between plots with and without ground flora (Deschampsia flexuosa or Anemone nemorosa) and different type of forest floor (with an organic (O) horizon or a mull (A) horizon). There were no differences in bioavailability of DOC from soil solutions extracted from plots with and without ground flora. The bioavailability of DOC in the different collected soil solutions varied, however. DOC in SWE was the most available, with a mean of 39% of DOC-loss in 21 days, and 18% of DOC being respired in 7 days. DOC in soil matrix solution was the least available of the soil solutions (7% respired), significantly less than DOC in soil leachate (11% respired). The methods measuring biodegradation of DOC, DOC-loss and CO₂-C respiration gave similar results and were comparable to bacterial production and bacterial growth efficiency, with the exception of SWE from the O-horizon at the D. flexuosa site, which had low bacterial production and bacterial growth efficiency, indicating a limitation of the bacterial growth. This study is one of the first to use bacterial production and bacterial growth efficiency for measuring bioavailability in terrestrial environments, giving an extra dimension for the process of biodegradation of DOC.     

Nutrient limitations to bacterial and fungal growth during cellulose decomposition in tropical forest soils

Nutrients constrain the soil carbon cycle in tropical forests, but we lack knowledge on how these constraints vary within the soil microbial community. Here, we used in situ fertilization in a montane tropical forest and in two lowland tropical forests on contrasting soil types to test the principal hypothesis that there are different nutrient constraints to different groups of microorganisms during the decomposition of cellulose. We also tested the hypotheses that decomposers shift from nitrogen to phosphorus constraints from montane to lowland forests, respectively, and are further constrained by potassium and sodium deficiency in the western Amazon. Cellulose and nutrients (nitrogen, phosphorus, potassium, sodium, and combined) were added to soils in situ, and microbial growth on cellulose (phospholipid fatty acids and ergosterol) and respiration were measured. Microbial growth on cellulose after single nutrient additions was highest following nitrogen addition for fungi, suggesting nitrogen as the primary limiting nutrient for cellulose decomposition. This was observed at all sites, with no clear shift in nutrient constraints to decomposition between lowland and montane sites. We also observed positive respiration and fungal growth responses to sodium and potassium addition at one of the lowland sites. However, when phosphorus was added, and especially when added in combination with other nutrients, bacterial growth was highest, suggesting that bacteria out-compete fungi for nitrogen where phosphorus is abundant. In summary, nitrogen constrains fungal growth and cellulose decomposition in both lowland and montane tropical forest soils, but additional nutrients may also be of critical importance in determining the balance between fungal and bacterial decomposition of cellulose.     

Bacterial pollution induced community tolerance (PICT) to Cu and interactions with pH in long-term polluted vineyard soils

Pollution induced community tolerance (PICT) has been suggested as an end-point measurement less affected by confounding environmental factors compared to standard methods of microbial growth, activity and community composition. We evaluated the use of PICT to determine Cu toxicity in vineyard soils polluted with Cu based fungicides (25-1120 mg Cu kg⁻¹). These soils also varied in pH (4.3-7.3), organic C (0.31-6.91%) and texture (14-56% silt). PICT was estimated as bacterial community tolerance to Cu measured by the [³H]leucine incorporation method. Bacterial tolerance to Cu increased 9 times in the most polluted compared to the unpolluted soils. Cu tolerance was also affected to a minor degree by pH, organic C and soil texture. Lower bacterial tolerance was found in soils with high pH and organic C, probably due to Cu becoming less bioavailable in soils with high pH and organic C content. The silt content appeared to increase bacterial tolerance, probably due to fine soil particles decreasing Cu bioavailability during the PICT detection phase. Despite the effects of other environmental factors, the main determinant of increased bacterial community tolerance to Cu was the pollution level. PICT measured with the leucine incorporation technique thus appears to be a sensitive and stable concept to evaluate toxic impacts, unless soils with very different pH, organic C or texture are studied.     

Biochemical properties and microbial community structure of five different soils after atrazine addition

Atrazine is one of the most used herbicides worldwide; however, consequences of its long-term agricultural use are still unknown. A laboratory study was performed to examine changes in microbial properties following ethylamino-¹⁵N-atrazine addition, at recommended agronomic dose, to five acidic soils from Galicia (NW Spain) showing different physico-chemical characteristics, as well as atrazine application history. Net N mineralization was observed in all soils, with nitrate being the predominant substance formed. The highest values were detected in soils with low atrazine application history. From 2% to 23% of the atrazine-¹⁵N was found in the soil inorganic-N pool, the highest values being detected after 9 weeks in soils with longer atrazine application history and lower indigenous soil N mineralization. The application of atrazine slightly reduced the amount of soil N mineralized and microbial biomass at short term. Soluble carbohydrates and β-glucosidase and urease activity decreased with incubation time, but were not significantly affected by the single application of atrazine. Microbial community structure changed as consequence of both soil type and incubation time, but no changes in the phospholipid fatty acid (PLFA) pattern were detected due to recent atrazine addition at normal doses. The saturated 17- to 20-carbon fatty acids had higher relative abundance in soils with a longer atrazine history and fungal biomass, as indicated by the PLFA 18:2ω6,9, decreased with the incubation time. The results suggested that the PLFA pattern and soil N dynamics can detect the long-term impact of repeated atrazine application to agricultural soils.     

Microbial dynamics after adding bovine manure effluent together with a nitrification inhibitor (3,4 DMPP) in a microcosm experiment

The application of animal manure effluents in agriculture in combination with nitrification inhibitors should be beneficial for nutrient recycling, soil quality, plant productivity, and greenhouse gas emission and offer economic advantages to make them an alternative to conventional fertilizers. The present study aims to estimate the effects of the addition of bovine manure effluent alone or together with a nitrification inhibitor (3,4-dymethylpyrazol-phosphate (3,4 DMPP)) on the microbial community dynamics in a Mediterranean soil in an incubation experiment over 28 days. The application of the bovine manure effluent increased respiration, microbial biomass carbon, fungal and bacterial growth, and enzyme activities and changed the microbial community structure evaluated by the phospholipid fatty acid pattern. Adding the bovine manure effluent together with the nitrification inhibitor, although partly negating the positive effect of the effluent on soil microbial activity, still resulted in higher or similar growth and activity as in the control. Our results indicate that the addition of the nitrification inhibitor 3,4 DMPP together with a bovine manure effluent could be a promising solution to control the animal manure effluent application effects on soil microbiological properties and microbial dynamics, as well as counteracting direct inhibiting effects of 3,4 DMPP on the soil heterotrophic community.     

Variation among Colletotrichum gloeosporioides isolates from infected coffee berries at different locations in Vietnam

Isolates of Colletotrichum gloeosporioides associated with anthracnose disease on coffee berries in Vietnam were characterized by morphological and molecular methods. Random amplified polymorphic DNA (RAPD) and microsatellite-primered PCR (MP-PCR) analyses were employed to investigate the genetic variation among 38 and 51 isolates of C. gloeosporioides , respectively. According to both methods, the isolates mainly grouped in accordance with geographical origins. Higher genetic variation ( H  = 0·312 and 0·335) in the northern population of C. gloeosporioides than in the southern population ( H  = 0·261 and 0·186), according to the RAPD and MP-PCR markers, respectively, was indicative of a difference between the northern and southern populations. Moderate gene differentiation ( G st = 0·1) between populations from the north and the south was found. However, there was no differentiation between locations within the northern or southern populations, indicating significant gene flow. A four-gamete test indicated a high level of recombination, particularly in the south. The geographic differences may be explained by different histories of coffee cultivation in different parts of Vietnam. The symptoms caused by the Vietnamese isolates on both hypocotyls and green berries were less severe than symptoms caused by the reference CBD (coffee berry disease; Colletotrichum kahawae ) isolates originating from Africa.