Characterization of mammalian selenoproteomes

In the genetic code, UGA serves as a stop signal and a selenocysteine codon, but no computational methods for identifying its coding function are available. Consequently, most selenoprotein genes are misannotated. We identified selenoprotein genes in sequenced mammalian genomes by methods that rely on identification of selenocysteine insertion RNA structures, the coding potential of UGA codons, and the presence of cysteine-containing homologs. The human selenoproteome consists of 25 selenoproteins.     

The in vitro effects of proxymetacaine, fluorescein, and fusidic acid on real-time PCR assays used for the diagnosis of Feline herpesvirus 1 and Chlamydophila felis infections

Purpose To investigate the possible inhibition of qPCR assays used for the diagnosis of ocular infections in cats by proxymetacaine, fluorescein, and fusidic acid, which are commonly used in veterinary ophthalmology. Methods Fluorescein, proxymetacaine, and fusidic acid were tested for possible inhibition of a triplex qPCR assay designed to detect Chamydophila felis, Feline herpesvirus 1 (FHV‐1), and the feline 28S ribosomal DNA (28S rDNA) gene by comparing threshold cycle (C_t) values of samples with and without the three products. A second experiment was carried out to measure the effects of various dilutions of fusidic acid. Results No statistically significant differences were detected between the C. felis, FHV‐1, and 28S rDNA C_t values with and without proxymetacaine or fluorescein. However, there was a statistically significant increase in FHV‐1 (P < 0.01), C. felis (P < 0.01), and 28S rDNA (P < 0.05) C_t values when fusidic acid was used. When dilutions of fusidic acid were tested, the results revealed that only the 1:2 dilution caused a statistically significant increase (P < 0.01) in the FHV‐1 Ct values. Conclusion Proxymetacaine and fluorescein did not interfere with our qPCR assays for the detection of C. felis and FHV‐1. The presence of fusidic acid caused a small inhibitory effect of doubtful clinical significance. In vivo studies are required to establish the clinical relevance of this study and to confirm our findings.     

Bird assemblages in forest fragments within Mediterranean mosaics created by wild fires

The role of habitat heterogeneity as a key factor in determining species pools in habitat mosaics has been acknowledged, but we still know little on the relative importance of the different ecological processes acting within such complex landscapes. We compared species richness and distribution in forest fragments imbedded in shrub-lands to those in continuous forests or in continuous shrublands. We examined the consistency of our data with the predictions of two hypotheses: 1) the Habitat fragmentation hypothesis which states that fragmentation has negative effects on the species from the original continuous habitat; 2) the Habitat supplementation /complementation hypothesis which stipulates that the presence of a matrix habitat around the fragments will mitigate negative effects on the species from the original habitat (supplementation) or allow the presence of species that depend on the presence of both the fragment and matrix habitats (complementation). We show that: 1) species richness in forest fragments did not differ from species richness in segments of continuous forests of equal area; 2) the bird community of forest fragments got impoverished in some forest species but a higher proportion of species common in continuous forests were not affected by fragmentation; 3) fragment communities had a significant proportion of common species that were scarce in, or absent from both continuous forests and shrublands. While, a few forest species supported predictions from the fragmentation hypothesis, occurrence patterns observed in several other species were consistent with either the supplementation or the complementation hypotheses. Our results suggest that there is no single hypothesis that properly captures the consequences of a shift from continuous forests to a mosaic of forest fragments and shrublands and that different ecological mechanisms act in conjunction to determine species pools in habitat mosaics. Habitat heterogeneity at a local scale appears a key factor in maintaining bird diversity in fire driven Mediterranean landscapes.     

Phenolic Compounds and Vitamin Antioxidants of Caper (Capparis spinosa)

Capparis spinosa shows strong resistance to the adverse Mediterranean conditions and it has nutritional and medicinal value. The aim of this study was to evaluate the contents of total phenolic compounds, rutin, tocopherols, carotenoids and vitamin C in leaves and flower buds of C. spinosa from different locations in Tunisia. Results showed the richness of caper with these compounds, especially phenolic compounds. Interestingly, it was also found the presence of both α- and γ-tocopherol in buds. Moreover, C. spinosa contained an appreciable level of vitamin C. The significant amounts of these antioxidants confirm the nutritional and medicinal value of caper.     

Red‐light stimulation of boar semen prior to artificial insemination improves field fertility in farms: A worldwide survey

A survey of in vivo fertility data from 31 pig farms distributed worldwide was conducted to determine whether stimulating boar semen with LED‐based red light increases its reproductive performance following artificial insemination (AI). Red‐light stimulation with MaXipig^® was found to increase farrowing rates (mean ± SEM, control: 87.2% ± 0.4% vs. light stimulation 90.3% ± 0.5%) and the number of both total and live newborn piglets. Red‐light stimulation increased farrowing rates in 27 farms, with an increase ranging from 0.2% to 9.1%. Similar results were observed in litter sizes. Suboptimal management after AI was suggested in those farms with no response to red‐light stimulation. Our results indicate that a routine use of red‐light stimulation of boar semen can have a positive effect on the reproductive performance. However, the effectiveness of this system appears to highly rely upon proper management of pig farms.     

Are protected areas preserving ecosystem services and biodiversity? Insights from Mediterranean forests and shrublands

Landscape Ecology - Protected areas (PAs) are essential for biodiversity conservation and the provision of ecosystem services (ES), representing 15% of the earth’s surface and targeted to...     

Enhanced photo- and antioxidative protection,and hydrogen peroxide accumulation in drought-stressed Cistus clusii and Cistus albidus plants

Mechanisms of drought stress resistance were studied in Cistus clusii Dunal and Cistus albidus L., two native Mediterranean shrubs that can withstand severe summer drought. While water deficit, solar radiation and temperature increased from winter to summer in the field, C. clusii and C. albidus reduced leaf area, increased root mass per leaf area, and showed diurnal changes in stomatal conductance to minimize water loss. In both species, the consequent reductions in CO2 assimilation were accompanied by reduced efficiency of photosystem II photochemistry, and protection against stress was afforded by enhanced de-epoxidation of violaxanthin in the xanthophyll cycle and increases in alpha-tocopherol and beta-carotene. In addition, hydrogen peroxide (H2O2) accumulation was observed in mesophyll cell walls of both species during the first stages of drought, although no accumulation of H2O2 was observed in chloroplasts or other organelles during the study. Despite these common responses, C. albidus and C. clusii differed in the extent of photo- and antioxidative protection. In response to drought, C. clusii showed a higher de-epoxidation state of the xanthophyll cycle and higher alpha-tocopherol and beta-carotene concentrations than C. albidus. We conclude that several structural and biochemical mechanisms underlie stress resistance in C. clusii and C. albidus, and are indicative of the different degrees of stress resistance of these shrubs.     

Sperm chromatin condensation as an in vivo fertility biomarker in bulls:a flow cytometry approach

Background:Genetic selection in cattle has been directed to increase milk production.This,coupled to the fact that the vast majority of bovine artificial inseminations(AI)are performed using cryopreserved sperm,have led to a reduction of fertility rates over the years.Thus,seeking sensitive and specific sperm biomarkers able to predict fertility rates is of vital importance to improve cattle reproductive efficiency.In humans,sperm chromatin condensation evaluated through chromomycin A3(CMA3)has recently been purported to be a powerful biomarker for sperm functional status and male infertility.The objectives of the present study were:a)to set up a flow cytometry method for simultaneously evaluating chromatin condensation and sperm viability,and b)to test whether this parameter could be used as a predictor of in vivo fertility in bulls.The study included pools of three independent cryopreserved ejaculates per bull from 25 Holstein males.Reproductive outcomes of each sire were determined by non-return rates,which were used to classify bulls into two groups(highly fertile and subfertile).Results:Chromatin condensation status of bovine sperm was evaluated through the combination of CMA3 and Yo-Pro-1 staining and flow cytometry.Sperm quality parameters(morphology,viability,total and progressive motility)were also assessed.Pearson correlation coefficients and ROC curves were calculated to assess their capacity to predict in vivo fertility.Sperm morphology,viability and total motility presented an area under the ROC curve(AUC)of 0.54,0.64 and 0.68,respectively(P>0.05),and thus were not able to discriminate between fertile and subfertile individuals.Alternatively,while the percentage of progressively motile sperm showed a significant predictive value,with an AUC of 0.73(P=0.05),CMA3/Yo-Pro-1 staining even depicted superior results for the prediction of in vivo fertility in bulls.Specifically,the percentage of viable sperm with poor chromatin condensation showed better accuracy and precision to predict in vivo fertility,with an AUC of 0.78(P=0.02).Conclusions:Chromatin condensation evaluated through CMA3/Yo-Pro-1 and flow cytometry is defined here as a more powerful tool than conventional sperm parameters to predict bull in vivo fertility,with a potential ability to maximising the efficiency of dairy breeding industry.