Pseudomonas associated with Bursaphelenchus xylophilus,its insect vector and the host tree: A role in pine wilt disease?

In this study, we characterized the diversity of Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector (Monochamus galloprovincialis) and its host (Pinus pinaster), by a culture‐independent approach using rpoD clone libraries. Clone libraries of Pseudomonas rpoD were obtained from B. xylophilus, M. galloprovincialis and infected P. pinaster. Most M. galloprovincialis and B. xylophilus sequences grouped together in the P. fluorescens group. Genes related to xenobiotics degradation and phenylacetate synthesis were present in the genomes of the type strains closely related to sequences retrieved from the nematode libraries. Results demonstrated that the nematode, during its life stages inside the tree, maintains a diverse Pseudomonas community that is closely related to the one associated with the insect vector. These bacteria might contribute to degradation of xenobiotics and tree weakening during the nematode tree infection.     

Impact of fertilization on cover crops and microbial community on a bauxite‐mined soil undergoing reclamation

The reclamation of bauxite‐mined areas can be favored by the application of organic and/or chemical fertilization to restore the vegetation. Otherwise, the impact of fertilizations on soil microbiota or plant–microbe interactions as land reclamation progresses is less understood. To address this issue, we evaluated the impact of organic and chemical fertilization on plants and soil microbial community within the first 36 months of land reclamation in a bauxite‐mined site. The experiment was set up according to a split‐plot design in which the main plots received fertilizations [non‐fertilized control (NF), chemical fertilization (CF; NPK and rock phosphate), organic fertilization (OF; poultry litter), and CF+OF combined], and the subplots received cover crops [no cover crops (NC), grass (B; Brachiaria), legume (S, Stylosanthes), and B+S combined]. Cover crops biomass yield was assessed annually with five field campaigns per year. We used phospholipid fatty acids (PLFAs) to infer the impacts of mining and restoration practices on actinobacteria, Gram‐negative and Gram‐positive bacteria, arbuscular mycorrhizal fungi, and fungi. Accordingly, PLFAs were determined before bauxite mining (pre‐mining), six months after topsoil reconfiguration (post‐mining), and after 14 and 36 months following the application of the fertilizations and cover crops. PLFAs results indicated that in post‐mining, the living microbiota was significantly lower than in pre‐mining. Cover crops biomass yield was highest for B and B+S fertilized with CF+OF at 14 and 36 months. Both parametric and non‐parametric statistics showed a temporal variation in the response of living microbes to the treatments applied. After 14 months, living microbes showed greatest response to OF, while at 36 months their response was strongest in the treatments with highest plant biomass production (B and B+S). These results suggest that in the early stages of land reclamation, living microbial biomass benefit the most from organic fertilizers. As this initial boost decline, living microbes are more likely to thrive in areas undergoing reclamation where they can develop synergistic interactions with plants.     

Nitrogen retention and plant uptake on a highly weathered central Amazonian Ferralsol amended with compost and charcoal

Leaching losses of N are a major limitation of crop production on permeable soils and under heavy rainfalls as in the humid tropics. We established a field trial in the central Amazon (near Manaus, Brazil) in order to study the influence of charcoal and compost on the retention of N. Fifteen months after organic‐matter admixing (0–0.1 m soil depth), we added ¹⁵N‐labeled (NH₄)₂SO₄ (27.5 kg N ha^–1 at 10 atom% excess). The tracer was measured in top soil (0–0.1 m) and plant samples taken at two successive sorghum (Sorghum bicolor L. Moench) harvests. The N recovery in biomass was significantly higher when the soil contained compost (14.7% of applied N) in comparison to only mineral‐fertilized plots (5.7%) due to significantly higher crop production during the first growth period. After the second harvest, the retention in soil was significantly higher in the charcoal‐amended plots (15.6%) in comparison to only mineral‐fertilized plots (9.7%) due to higher retention in soil. The total N recovery in soil, crop residues, and grains was significantly (p < 0.05) higher on compost (16.5%), charcoal (18.1%), and charcoal‐plus‐compost treatments (17.4%) in comparison to only mineral‐fertilized plots (10.9%). Organic amendments increased the retention of applied fertilizer N. One process in this retention was found to be the recycling of N taken up by the crop. The relevance of immobilization, reduced N leaching, and gaseous losses as well as other potential processes for increasing N retention should be unraveled in future studies.     

Pharmacokinetics and Effects of Alkalization During Oral and Intravenous Administration of Naproxen in Horses

The use of suitable therapeutic protocols is particularly important when extra-label drugs are used or when physiological parameters are modified, as in the case of the administration of alkaline substances to racehorses. The pharmacokinetics of naproxen (NAP), after both intravenous (iv) and oral administration of 10 mg/kg body weight (BW), was investigated in horses under normal metabolic conditions and in horses whose conditions were modified by the iv administration of 250 mg/kg BW of sodium bicarbonate (NaHCO₃). The hypothesis that blood and consequent urinary alkalization could modify NAP pharmacokinetics was evaluated. Drug quantification was performed on serum and urine using High Performance Liquid Chromatography (HPLC) with ultraviolet-visible detection. Results were also integrated with cycloxygenase (COX)-inhibition published data to suggest an appropriate schedule for NAP dosage in horses. After iv administration, NAP was rapidly distributed (t_1/2α: 0.71 ± 0.43 iv NaHCO₃ and 0.55 ± 0.62 hours No NaHCO₃), whereas its elimination was quite slow (t_1/2β: 6.74 ± 0.41 hours), particularly in iv NaHCO₃ animals (t_1/2β: 8.95 ± 1.37 hours). After oral treatments, NAP was more rapidly absorbed and elimination was slower in iv NaHCO₃ animals (t_1/2λ_z: 17.50 ± 6.66 vs. 7.17 ± 0.91 hours). The oral bioavailability of NAP was approximately 87% and 77% in No NaHCO₃ and iv NaHCO₃, respectively. Urinary excretion of the drug as a parent compound was low. The alkalization procedure did not anticipate the elimination of the acidic drug as expected, but it also influenced the absorption of the drug that was administered orally. The dosage scheme of 10 mg/kg BW iv or orally seems to be appropriate to produce an anti-inflammatory effect for 12 to 24 hours.     

Thinking outside the patch: a multi-species comparison of conceptual models from real-world landscapes

Context

When modeling a species’ distribution, landscapes can alternatively be conceptualized following patch- or gradient-based approaches. However, choosing the most suitable conceptualization is difficult and methods for empirical validation are still lacking.

Objectives

To address the conditions under which a given conceptual model is more suitable, taking into account landscape context and species trait dependency effects. Patch- and gradient-based conceptualizations were built based on two structurally different landscapes: variegated and mosaic. We hypothesize that: (H1) gradient-based models better describe variegated landscapes while patch-based models perform better in mosaic landscapes; and (H2) gradient-based models will fit generalist species better while patch-based models will suit specialists better.

Methods

We modeled the distribution of eleven bird species in each landscape using each conceptualization. We determined the suitability of each conceptual model to fit statistical models by looking for cross-species responses and deviations from best models.

Results

We found no clear support for our hypotheses. Although patch-based models performed better in mosaic landscapes (H1), they also provided useful conceptualizations in variegated landscapes. However, when patches showed high heterogeneity, gradient-based approaches better fit specialist species (H2).

Conclusions

The suitability of a given conceptual model depends on the interaction between species habitat specialization, and the intrinsic spatial heterogeneity of the landscape and the ability of each conceptualization to capture it. Gradient-based models provide better information on resource allocation, while patch-based models offer a simplified perspective on landscape attributes. Future research should consider the nature of both species and landscapes in order to avoid bias from inadequate landscape conceptualizations.

     

Tunable supercurrent through semiconductor nanowires

Nanoscale superconductor/semiconductor hybrid devices are assembled from indium arsenide semiconductor nanowires individually contacted by aluminum-based superconductor electrodes. Below 1 kelvin, the high transparency of the contacts gives rise to proximity-induced superconductivity. The nanowires form superconducting weak links operating as mesoscopic Josephson junctions with electrically tunable coupling. The supercurrent can be switched on/off by a gate voltage acting on the electron density in the nanowire. A variation in gate voltage induces universal fluctuations in the normal-state conductance, which are clearly correlated to critical current fluctuations. The alternating-current Josephson effect gives rise to Shapiro steps in the voltage-current characteristic under microwave irradiation.     

Eucalyptus benthamii Maiden et Cambage growth and wood density in integrated crop-livestock systems

Integrating trees in agricultural landscapes is a promising option to sustainably provide goods for society while increasing biodiversity, securing animal welfare, and generating profits for stakeholders. The choice of the species and knowing how timber quality is affected when trees are integrated to crop and/or livestock enterprises can provide additional insights into the usefulness of timber after harvest, and wood density is one of the most important properties in this regard. The present study aimed to evaluate how Eucalyptus benthamii growth and wood density are affected in integrated crop-livestock systems when compared to monoculture forestry 74 months after planting in subtropical environments. The integrated systems were in an alley cropping design where crop and/or grazed pasture were temporally rotated in between tree lines (14?×?2 m trees spacing), and those systems were compared to monoculture forestry (3?×?2 m spacing). Tree trunks (n?=?60) were sampled in five diameter classes of each treatment by cutting disks in six positions of the trunk (0.1 m, 1.30 m, 25%, 50%, 75% and 90% of the total height) (n?=?360). Trees growing in integrated systems increased trunk diameter at breast height by 24.7%, increased wood fiber production per tree by 17.9%, and produced wood 9.0% less dense than in the monoculture forestry system. Monoculture forestry increased tree height, and there was no difference of trunk volume among the production systems. The results suggest that integrated systems can produce timber with lower wood density, but faster individual tree growth than in forestry monocultures. Such a system can promote sustainable intensification of agricultural production, and enhance provision of complementary ecosystem services.

     

Protected areas and frugivorous fish in tropical rivers: Small-scale fisheries,conservation and ecosystem services

1. Frugivorous fish provide often conflicting ecosystem services of seed dispersal and food provisioning in tropical rivers. Fishing may reduce the size and abundance of frugivorous fish, thus affecting their potential as seed dispersers, which could affect the conservation of these fish and of floodplain forests.
2. The goal of this study was to assess the influence of co-managed protected areas in the form of extractive reserves (RESEX) and small-scale fisheries on frugivorous fish in the Tapajós and Negro rivers, in the Brazilian Amazon. The study examined whether: (i) frugivorous fish are important for fisheries and selectively caught; and (ii) frugivorous fish abundance, size and fisheries catch per unit of effort are higher inside the RESEX than outside.
3. The analyses included fisheries-dependent data (3,753 fish landings) and independent data (12,730 sampled fish) collected in 16 fishing communities (eight for each river). In both rivers, frugivorous fish are among the 10 species caught the most and frugivorous biomass was proportionately higher in landings than in samplings, indicating fisheries selectivity towards these fishes.
4. In both rivers, catches of frugivorous fish were higher outside the RESEX than inside. Catch per unit effort and the proportion of frugivores in the catch were higher outside the RESEX in the Tapajós River but did not vary between sites inside and outside the RESEX in the Negro River. Frugivorous fish were larger inside the RESEX in the Negro, but smaller inside the RESEX in the Tapajós.
5. The results indicated that the ecosystem services of seed dispersal and food source provided by frugivorous fish are not in conflict in the tropical rivers studied. Therefore, these clearwater and blackwater rivers in the Brazilian Amazon show a balance between fisheries and conservation of frugivorous fish, which play an essential role in the functioning of tropical floodplain forest ecosystems.