Genetic variation and population structure of Fusarium oxysporum f.sp. vasinfectum in Australia

Genetic variation among 348 isolates of Fusarium oxysporum f.sp. vasinfectum (Fov) collected from diseased cotton plants in 31 fields in six cotton-growing regions in New South Wales and Queensland in 2002 and 2004 was analysed using amplified fragment length polymorphisms (AFLPs). Twenty-eight haplotypes were identified based on 146 polymorphic bands generated with four Eco RI and Mse I and four Hind III and Mse I primer combinations. The haplotypes separated into two distinct groups (37% similarity), with 21 in group I and seven in group II. The two unique vegetative compatibility groups of Fov known to occur in Australia (VCG 01111 and VCG 01112) were correlated to the two AFLP groups, with both VCG 01111 reference isolates being included in group I and both VCG 01112 reference isolates in group II. Group I was widespread, occurring in all regions sampled and all but one of the fields, while group II was limited to three fields in the Boggabilla region. Group I was further divided into two subgroups. The two haplotypes in subgroup I-B (I-20 and I-21) may represent the emergence of a new form of Fov based on their marked genetic discrimination from the subgroup I-A haplotypes. No spatial population differentiation was discernible at the national level, as only 3·9% of total genetic variation was attributed to differences among regions ( P =  0·4868). When each region was analysed separately, clear differentiation was found in the Boggabilla region, with 86·3% of total genetic variation resulting from differences among fields ( P <  0·0001).     

Habitat mapping in the Caribbean for management and conservation: Use and assessment of aerial photography

• 1 The nature and distribution of the coastal and shallow marine habitats of Anguilla in the Caribbean were examined using aerial photography coupled with extensive ground truth information.
• 2 The objective was to develop an accurate method of marine habitat mapping for the analysis of the marine ecosystem in order to develop a procedure for marine and coastal resource management.
• 3 This paper describes the method which was adopted as well as the biological results.
• 4 It is concluded that the management and sustainable use of the natural resources may be improved as a result of accurate habitat mapping.

     

Hydromorphological rehabilitation improves channel morphology,instream biotopes,and macroinvertebrate communities,and thus enhances the conservation of an urban river

1. Many river rehabilitation projects have been criticized for failing to meet their goals or for being insufficiently monitored. There is, therefore, an urgent need to develop robust approaches for assessing treatment efficacy and thus guide the increasing investment in rehabilitation.
2. Instream biotopes (formerly called ‘functional habitats’ or ‘mesohabitats’ by different authors) and their macroinvertebrate assemblages were used to assess the effectiveness of entire-channel hydromorphological rehabilitation of a 1.8-km stretch of a lowland stream through the town of Market Harborough, Leicestershire, UK.
3. The project successfully enhanced the physical diversity, measured in the rehabilitated reach as the coefficients of variability for channel water depth and width, wet surface area, number of instream biotopes, and biotope diversity.
4. The project also enhanced the biodiversity conservation value, measured as macroinvertebrate total density, total biomass, richness, diversity, Ephemeroptera, Plecoptera, and Trichoptera (EPT) richness, EPT diversity, EPT count%, and EPT biomass%, all of which significantly increased following rehabilitation. Chironomidae count% and biomass% significantly decreased following rehabilitation. Rehabilitation was also successful in significantly increasing macroinvertebrate shredder, scraper, and filter-feeder group density.
5. Changes in the macroinvertebrate community metrics in the rehabilitated reach were related significantly to changes in the percentages of cover of instream biotopes and increases in biotope diversity in the rehabilitated reach.
6. Macroinvertebrate structural and functional metrics can provide quantitative data for assessing reach-level rehabilitation outcomes, if samples are collected in a pre-defined sampling protocol stratified at the instream biotope level.
7. The practical implications of this work are that the design of rehabilitation projects, if based upon the recreation of biotope heterogeneity, will succeed in improving biological value and restoring the area to near naturalness if a suitable upstream source of macroinvertebrates for natural recolonization is available. The study shows that the concept of biotopes has an important role to play in river conservation management.

     

Recovery of microorganisms from synovial and pleural fluids of animals using hyperosmolar media

L-phase (CWD) broth and plate media were used in parallel with conventional microbiological media during a 3-year period for culturing synovial and pleural fluids of animals. Two kinds of recoveries were obtained where parallel conventional methods were negative: (1) parent or normal bacteria, in very low numbers; and (2) Type B CWD variants in equally low numbers. Organisms in group 1 were: Streptococcus zooepidemicus from horses (2X); β-hemolytic streptococci, Lancefield Gp. G (2X); Staphylococcus aureus; Actinobacillus, and Actinomyces viscosus. Group 2 consisted of Bacteroides sp., Propionibacterium acnes, and three “Nocardia-like” sp. Catalase + Actinomyces was not recovered equally well on CWD plates as on conventional media with fluids obtained during ampicillin treatment. This occurred in spite of the fact that the CWD media was shown to support growth and reversion of laboratory induced L-phase variants of Nocardia caviae and N. asteroides, and had facilitated recovery of a Bacteroides L-phase variant from a pleural fluid. The nature of this fault in the media is under investigation in this laboratory.     

Erythrocyte deformation in human muscular dystrophy

Erythrocytes from patients with congenital muscular dystrophy exhibit dramatic surface deformation when observed with a scanning electron microscope. A similar alteration, but one affecting a smaller proportion of cells, occurs in the case of female carriers of the sex-linked Duchenne dystrophic condition. These observed changes in the erythrocyte surface may reflect a systemic defect in membrane properties.     

Safety and efficacy of an attenuated strain of Salmonella choleraesuis for vaccination of swine.

The purpose of this study was to determine the safety and efficacy of a live Salmonella choleraesuis immunizing strain, obtained by repeated ingestion and recovery through porcine neutrophils. The strain was tested in mice and in pigs. The vaccine was safe and effective in controlled experimental trials, using clinical, pathologic, and microbiologic criteria. Vaccinated pigs were able to maintain normal weight gains during the 4-week observation period following challenge inoculation with a high dose of a virulent strain.     

Endophytic bacterial communities in the periderm of potato tubers and their potential to improve resistance to soil-borne plant pathogens

To evaluate whether the location of bacterial endophyte communities contributes to disease resistance in potato tubers ( Solanum tuberosum ), the population density, biodiversity and antibiotic activity of endophytic bacteria was examined from the tuber peel (periderm plus top 3 mm of tissue) of four cultivars (Russet Burbank, Kennebec, Butte and Shepody). There were no significant differences for population density of bacteria among the layers of peel examined and no cultivar × peel layer interaction. Endophytic bacteria from several layers of peel were challenged in in vitro bioassays to the soil-borne plant pathogens Fusarium sambucinum , Fusarium avenaceum , Fusarium oxysporum and Phytophthora infestans (mating types A1 and A2). In general, antibiosis of bacterial endophytes against these pathogens was significantly higher ( P  = 0.01) in isolates recovered from the outermost layer of tuber peel and decreased progressively toward the centre of the tuber. Antibiosis against P. infestans was variable, with a progressive decrease in antibiotic activity from outer to inner layers of peel occurring in cvs Russet Burbank and Kennebec only. For antibiosis there were significant cultivar × peel, and cultivar × pathogen interactions ( P  = 0.01). In all cases the inhibitory activity of endophytic bacteria was significantly greater ( P  = 0.01) against the A1 than the A2 mating type of P. infestans . In four of seven cases, where the same species of bacteria were recovered from all three peel layers, antibiosis to pathogens decreased significantly ( P  = 0.01) with depth of recovery (from the periderm to inside the tuber), indicating that in certain communities of endophytic bacteria, defence against pathogens may be related to bacterial adaptation to location within a host and may be tissue-type and tissue-site specific.     

Preparturient changes in allantoic fluid and fetal plasma from chronically catheterised ewes.

Before birth a marked rise in the potassium/sodium concentration ratio of allantoic fluid coincided with a similar rise in the corticosteroid levels of fetal plasma. The prepartum corticosteroid increase started at 134-136 days gestational age whether delivery occurred at 141 or 151 days.