Isolation and species distribution of staphylococci from animal and human skin

From April 1999 to December 2000, a survey was made on the distribution of Staphylococcus species on the skin of 7 kinds of animals and humans. Staphylococci were isolated from 12 (100%) of 12 pigs, 17 (89.5%) of 19 horses, 30 (100%) of 30 cows, 73 (90.1%) of 81 chickens, 10 (40%) of 25 dogs, 23 (76.7%) of 30 laboratory mice, 20 (52.6%) of 38 pigeons, and 80 (88.9%) of 90 human beings. The predominant staphylococci isolated from a variety of animal species were novobiocin-resistant species, S. xylosus and S. sciuri regardless of the animal host species. The novobiocin-resistant species including S. xylosus and S. sciuri were only occasionally isolated from human skin. The predominant staphylococci found on human skin were novobiocin-sensitive species, S. epidermidis (63.8%), followed by S. warneri (28.8%) and S. hominis (13.8%). The results suggest that the staphylococcal flora inhabiting animal skin are different from those of human skin in regard to the predominant species isolated. In this study, we used pulsed-field gel electrophoresis to examine the chromosomal polymorphisms of S. epidermidis isolated most frequently from human skin. Strains of S. epidermidis showed the greatest genomic diversity in their fragment patterns.     

粳稻品种SSR多态性检出率的分析

 用395对SSR引物测得多态性检出率：日本近缘品种（粳型）间为11.12%，日本近缘品种与意大利品种（粳型）间、与美国品种（籼型）间及与菲律宾品种（籼型）间分别为17.58%、20.80%和38.62%，显示相同粳稻生态型品种间多态性检出率低于不同生态型品种间，而相同粳稻生态型内，日本近缘品种间的多态性检出率更低。在日本近缘品种中，不同品种间多态性检出率差异较大，其变幅为3.79~15.95%。此外，不同染色体间引物的多态性检出率也存在较大差异，其中第10染色体的供试引物多态性检出率无论在不同生态型品种间或相同生态型品种间均最低。     

Porcine MHC classical class I genes are coordinately expressed in superantigen-activated mononuclear cells

The expression of the major histocompatibility complex (MHC) classical class I genes is important for the adaptive immune response to target virus-infected cells and cancer cells. The up-regulation of the MHC is achieved by hormonal/cytokine signals including IFN-γ-inducible elements. The swine leukocyte antigen (SLA), the MHC class I region of pigs, consists of the duplicated classical class I genes, SLA-1, SLA-2 and SLA-3, but the molecular mechanisms involved in their up-regulation after T cell stimulation have not been fully elucidated. In order to better understand some of the putative regulatory mechanisms of SLA class I gene expression in activated T cells, we examined the coordinated expression of the SLA classical class I, IFN-γ and interferon regulatory factor-1 (IRF-1) genes in the peripheral blood mononuclear cells (PBMCs) of SLA homozygous Clawn miniature swine stimulated for 72h with either IFN-γ or an enterotoxin produced by Staphylococcus aureus. This enterotoxin, toxic shock syndrome-1 (TSST-1), is known to act as a superantigen (sAG) to activate the T cells in various vertebrate species. We showed by using mAbs and flow cytometry that the CD4(+)CD25(+) cell number of swine PBMCs was also increased by TSST-1 and to a lesser degree by IFN-γ. Time course analyses of the expression of the IFN-γ, IRF-1 and the three classical class I genes, SLA-1, SLA-2, and SLA-3, in PBMCs by quantitative real-time PCR revealed a transitory response to TSST-1 or IFN-γ stimulation. The IFN-γ mRNA levels in the PBMCs were continuously up-regulated over the first 48h by TSST-1 or IFN-γ. In contrast, SLA class I expression moderately increased at 24h and then decreased to a baseline level or less at 72h of IFN-γ or TSST-1 stimulation. The three classical SLA class I genes showed similar expression kinetics, although SLA-3 mRNA level was consistently lower than those of SLA-1 and -2. The expression of IRF-1, a modulator of SLA expression, showed similar kinetics to those of the three classical SLA class I genes. The expression profiles detected by flow cytometry of the SLA molecules on the cell surface of PBMCs were maintained at a consistently high level during cell stimulation with either TSST-1 or IFN-γ, which was distinct from the kinetics of mRNA expression. These results showed that miniature swine SLA class I mRNA expression was effectively and equally up-regulated among the three loci and coordinately with IRF-1 gene expression after stimulation of T cell activation by sAG or IFN-γ.     

Detection and verification of QTLs associated with heat-induced quality decline of rice (Oryza sativa L.) using recombinant inbred lines and near-isogenic lines

Decline in the apparent quality of rice (Oryza sativa L.) grain due to high temperatures during ripening recently became a major concern in many areas in Japan. The occurrence of white-back kernels (WBK) is one of the main problems of heat-induced quality decline. We identified QTLs associated with the occurrence of WBK using recombinant inbred lines (RILs) and verified their effects using near-isogenic lines (NILs). The QTL analysis used F₇ and F₈ RILs derived from ‘Hana-echizen’ (HE), which is tolerant to high temperature, × ‘Niigata-wase’ (NW), which is sensitive to high temperature. Four QTLs were identified on chromosomes 3, 4, 6, and 9 (qWB3, qWB4, qWB6 and qWB9). To verify the effects of qWB6 and qWB9, we developed two NILs in which qWB6 or both were introduced from HE into the NW background. The HE allele at qWB6 significantly decreased WBK under multiple environments. The combination of qWB6 and qWB9 in an F₂ population derived from a cross between a NIL and NW showed that the NW allele at qWB9 significantly decreased WBK if the qWB6 allele was HE. These results will be of value in marker-assisted selection for the breeding of rice with tolerance to heat-induced quality decline.     

Breeding efforts to mitigate damage by heat stress to spikelet sterility and grain quality

Global warming is predicted to aggravate the risk of unstable crop production. It is of great concern that damage to rice spikelet sterility and grain quality will increase, resulting in yield and economic losses. To secure the global food supply and farmers’ income, the development of rice cultivars with heat resilience is a pressing concern. Regarding spikelet sterility, rice cultivars with heat tolerance at different growth stages have been identified in recent years. The early-morning flowering (EMF) trait is effective in heat escape because it shifts the time of day of flowering to earlier in the morning when it is cooler. Although varietal differences are very small, there are some genetic resources for EMF in wild rice accessions. Regarding heat-induced grain chalkiness, heat-tolerant japonica cultivars for mitigating white-back type of chalky grains (WBCG) were found. Quantitative trait loci for heat tolerance at flowering, EMF, and for WBCG in grain quality have been mapped on the rice chromosomes. Further genetic efforts have been successfully connected to the development of near-isogenic lines for each trait with tagged molecular markers. These breeding materials are quite unique and useful in facilitating marker-assisted breeding toward the development of heat-resilient rice in terms of spikelet sterility and grain quality.     

Using landscape metrics and topographic analysis to examine forest management in a mixed forest,Hokkaido, Japan: Guidelines for management interventions and evaluation of cover changes

In this study, we identified the distribution characteristics of a mixed forest of coniferous and broad-leaved trees (a typical forest type in Hokkaido, Japan) using landscape metrics and topographic factors, and attempted to apply this knowledge to examine forest management. This approach provides a new perspective (i.e., the landscape structure) on forest management, which traditionally has been determined on the basis of individual forest stands. We first created a cover type map of the study area by means of aerial photo interpretation. The characteristics of each cover type identified from the photographs were determined using landscape metrics for each cover class. We digitized a forest administrative map (1:20,000 scale) using 20-m contours, and imported this into GIS software to produce a terrain model; on this model, we overlaid the cover types. Our examination of landscape metrics showed that most of the natural forest could be managed similarly. However, our examination of topographic characteristics revealed exceptions (e.g., areas that are difficult to regenerate) that will require particular attention when managing the natural forest. Based on the information we obtained, we proposed a guideline for sustainable forest management. From the land cover map, we proposed an “improved” cover type map to illustrate the development of a high growing stock of forest based on forest management. We compared the current cover map with the “improved” cover map and demonstrated that the improved form would have more significant effects on fauna that do not recognize differences in the proportion of the dominant species types than on those that can recognize these differences. Our results show how the information obtained using landscape metrics and terrain models is an essential tool for various stages of forest management planning.     

Raccoon dogs (Nyctereutes procyonoides) are the new natural definitive hosts of Metagonimus hakubaensis

The definitive hosts of Metagonimus hakubaensis are reported to be hamsters, rats, mice, dogs, cats, chickens, and quails in experimental infection and Japanese water shrews in natural infection. Here we report that raccoon dogs are new natural definitive hosts of M. hakubaensis, based on morphological and molecular analyses of Metagonimus flukes collected from the host species from Aomori Prefecture, Japan. Moreover, M. hakubaensis recovered from raccoon dogs showed higher fecundity than those recovered from Japanese water shrews. Therefore, raccoon dogs were considered as a more suitable natural definitive host of M. hakubaensis than Japanese water shrews.     

DNA polymorphism in the chicken growth hormone gene: Association with egg production

Restriction fragment length polymorphic markers in the chicken growth hormone (GH) gene were tested for their association with egg production traits. Alleles of GH were determined in 3 non‐inbred strains from different genetic bases. The frequency of PS1 (+) allele in the three strains was very low in contrast to the layer strain previously reported. Results of the present study indicate that the frequency of PS (+) is related to egg production and that the PS1 (+) allele may be used as a genetic marker for selection in egg production.     

A major genome region underlying artemisinin resistance in malaria

Evolving resistance to artemisinin-based compounds threatens to derail attempts to control malaria. Resistance has been confirmed in western Cambodia and has recently emerged in western Thailand, but is absent from neighboring Laos. Artemisinin resistance results in reduced parasite clearance rates (CRs) after treatment. We used a two-phase strategy to identify genome region(s) underlying this ongoing selective event. Geographical differentiation and haplotype structure at 6969 polymorphic single-nucleotide polymorphisms (SNPs) in 91 parasites from Cambodia, Thailand, and Laos identified 33 genome regions under strong selection. We screened SNPs and microsatellites within these regions in 715 parasites from Thailand, identifying a selective sweep on chromosome 13 that shows strong association (P = 10(-6) to 10(-12)) with slow CRs, illustrating the efficacy of targeted association for identifying the genetic basis of adaptive traits.     

早籼稻近缘系的主要农艺性状与SSR标记鉴定

以早籼稻浙106与近缘系浙205、浙206和浙207共4个品种(系)为研究对象,利用农艺性状为观测指标的形态标记鉴定技术和简单重复序列(SSR)分子标记鉴定技术对4个品种(系)的农艺性状和基因组DNA进行性状考查。结果表明:4个材料具有各自所特有的外观形态标记,但只运用农艺性状的观察很难来鉴定浙106与近缘系,选用的32对引物中有13对引物在品种(系)间表现明显的多态性特征,SSR标记结合形态标记用于近缘系间的品种鉴别较为合适。