Bacterial community composition and distribution in different segments of the gastrointestinal tract of wild‐caught adult Penaeus monodon

Bacterial community associated with the gastrointestinal (GI) tract of aquaculture animals can play important roles in health, nutrition and disease. Compared with the GI tract of aquatic vertebrates such as fish, crustacean GI tract has unique structures and surfaces in different segments that may contribute to differences in the bacterial communities. This study examined the bacterial composition and distribution in different segments along the GI tract and in digesta of wild‐caught adult Penaeus monodon using Automated Ribosomal Intergenic Spacer Analysis (ARISA), real‐time quantitative PCR and clone libraries of 16S rRNA genes. Thirty‐nine bacterial species in four phyla including Proteobacteria (α, β, ε, γ), Firmicutes, Bacteroidetes and Actinobacteria were represented in the GI tract of adult P. monodon. Proteobacteria comprised over 80% abundance of the bacterial community in most segments of the GI tract, except the middle intestine that was dominated by Firmicutes (~50% abundance). The results also showed that bacterial communities showed significant differences along the GI tract segments, particularly the hindgut (p < .001) with Vibrio and Ferrimonas as dominant genera. The knowledge about the distribution of bacteria could be useful in understanding interaction of commensal bacteria and pathogens in different segments, and its potential influence on the effectiveness of probiotic bacteria in the GI tract of shrimp.     

Molecular characterization and expression of the Prostaglandin reductase 1 gene and protein during ovarian development of the giant tiger shrimp Penaeus monodon

Prostaglandin reductase 1 (PTGR1; also called NADP⁺-dependent leukotriene B4 12-hydroxydehydrogenase, LTB4DH) is the key enzyme responsible for biological inactivation of prostaglandins and related eicosanoids. In this study, the full-length cDNA of PTGR1 in the giant tiger shrimp (Penaeus monodon) was characterized. PmPTGR1 was 2405 bp in length with an ORF of 1035 bp encoding a polypeptide of 344 amino acids. Interestingly, its 3′ UTR contained the nucleotide sequence (825 bp) that significantly matched positions 3–277 (with 4 amino acid variants) of the deduced P. monodon peritrophin2 protein. PmPTGR1 was more preferentially expressed in ovaries than testes of P. monodon broodstock. In intact broodstock, PmPTGR1 was up-regulated in early cortical rod (stage III) ovaries (P < 0.05) and comparably expressed afterwards (P > 0.05). In eyestalk-ablated broodstock, PmPTGR1 was temporally lower in early cortical rod compared to previtellogenic (I) and vitellogenic (II) ovaries (P < 0.05) and returned to the previous level in mature (IV) ovaries (P < 0.05). More importantly, the relative expression level of PmPTGR1 in each ovarian stage in eyestalk-ablated females was lower than that in intact P. monodon broodstock (P < 0.05). This strongly suggested that eyestalk ablation potentially affects the expression of PmPTGR1 allowing the stimulating effects of prostaglandins and related eicosanoids on vitellogenesis and ovarian maturation of P. monodon. The level of ovarian PmPTGR1 protein seemed to increase during ovarian development in intact broodstock but slightly reduced in mature ovaries in eyestalk-ablated broodstock. Results suggested the possible contribution of PmPTGR1 in ovarian development of P. monodon.     

Development of methods for detection of SNPs in <Emphasis Type="Italic">Activin type IIB receptor</Emphasis> and a preliminary study on association between its polymorphism and growth parameters of the Asian seabass <Emphasis Type="Italic">Lates calcarifer</Emphasis>

Molecular markers that allow selection of juveniles and broodstock with a high growth performance are useful for the aquaculture industry. In this study, association between single nucleotide polymorphisms (SNPs) of the Activin type IIB receptor (LcActRIIB) and growth-related parameters of Asian seabass Lates calcarifer juveniles were examined by PCR-direct sequencing. Three SNPs (G>A_c.965+g.7, C>A>T _c.965+g.33 and G>A _c.965+g.189) generating seven composite SNP genotypes (diplotypes) were found in the LcActRIIB gene segment (398 bp). Among three identified SNPs, only a G>A_c.965+g.7 SNP showed significant association with growth traits (average body weight, total length, hepatic weight and hepatosomatic index) of examined fish (P < 0.01). Significant association between diplotypes and growth-related parameters were found. Juveniles exhibiting diplotypes I–V showed greater growth-related parameters than those exhibiting diplotypes VI (P < 0.001; N = 57). Simple methods for rapid genotyping of a G>A_c.965+g.7 SNP were successfully developed based on gel-based bi-allelic PCR amplification of specific alleles (Bi-PASA) and real-time PCR-based PASA analyses (N = 99). Identical genotypes were consistently obtained from different detection methods.