Relationship of Icelandic cattle with Northern and Western European cattle breeds,admixture and population structure

ABSTRACT

Icelandic cattle is believed to have been brought from Norway during the settlement of Iceland around AD 870-930. Previous research on genetic relationships has indicated that Icelandic cattle is most related to northern Nordic indigenous breeds. Using single nucleotide polymorphism genotype data from Icelandic cattle and 29 Northern and Western European cattle breeds, we studied relationships and admixture among these breeds, and assessed population structure in Icelandic cattle. Population structure analysis through principal component analysis, estimation of ancestry, and analysis of patterns of population splitting and mixing revealed that Icelandic cattle are most related to three Finncattle breeds (Eastern, Northern and Western Finncattle), and Swedish Mountain cattle. Icelandic cattle has very low levels of admixture. We observed very limited population structure in Icelandic cattle. The observed structure was due to variable sire contributions. Over 1000 years of almost complete isolation has made Icelandic cattle highly genetically distinct from other cattle breeds.     

A new model for the structure of lignosulphonates: Part 1. Behaviour in dilute solutions

Lignosulphonates are formed by the cleavages of the α-O-4 linkages of the “infinite” lignin network in wood, and a sulphonation of the α- and/or γ-positions of the side chains of the C₉ units. The resulting lignosulphonate molecule forms a randomly branched polyelectrolyte. The molecule coils in solution to make a more ball-shaped molecule with the sulphonate groups enriched on the surface. The scaling laws for this model of the lignosulphonate polymer as well as for other models of the lignosulphonate have been derived. The scaling laws for the randomly branched polyelectrolyte and microgel are the same for most properties except the polyelectrolyte expansion. The scaling laws are compared with literature experimental values for radii and polyelectrolyte expansion. The randomly branched polyelectrolyte model successfully accounts for the behaviour in solution. The dependence of the polyelectrolyte expansion on the molecular weight demonstrates that the lignosulphonate is not a microgel structure.     

Temperature variations during grain filling obtained in growth tunnel experiments and its influence on protein content,polymer build-up and gluten viscoelastic properties in wheat

The aim of this study was to investigate effects of temperature during grain filling on gluten quality characteristics at a lower to moderate temperature range. Experiments with two wheat varieties grown in field covered by polypropylene tunnels during grain filling were performed in two seasons. Mean day temperature differences achieved within the tunnel were approximately 2–2.5 °C from the open to the closed end. There were significant effects of temperature on grain maturity time, thousand grain weight and protein content. The resistance to stretching of the gluten doughs increased with the increasing day temperatures. This was reflected in the proportion of unextractable polymeric proteins (UPP). The results suggest that increases in temperature within this temperature range affect the polymerization of polymeric proteins, giving higher molecular weights, and hence increased Rmax and stronger gluten. The two varieties differed in their response to temperature. In addition, there were seasonal variations in gluten functionality that may be associated with fluctuations in day temperatures between the seasons.     

Effect of temperature variation during grain filling on wheat gluten resistance

The objective was to investigate effects of natural variation in temperature during grain filling on wheat (Triticum aestivum L) gluten quality. Seventeen field trials with four different varieties were conducted during the years 2005–2008. Temperature records were obtained from automatic weather stations located near the field trial sites. The period from heading to yellow ripeness was divided into 20 sub-phases of equal thermal time units, and a last sub-phase comprising the seven days after yellow ripeness. Partial Least Squares Regression was used to relate the temperature records of the different sub-phases to gluten quality analysed by the Kieffer Extensibility test and the SDS sedimentation test.     

Short communication: investigation of the feasibility of genomic selection in Icelandic Cattle

Icelandic Cattle is a local dairy cattle breed in Iceland. With about 26,000 breeding females, it is by far the largest among the indigenous Nordic cattle breeds. The objective of this study was to investigate the feasibility of genomic selection in Icelandic Cattle. Pedigree-based best linear unbiased prediction (PBLUP) and single-step genomic best linear unbiased prediction (ssGBLUP) were compared. Accuracy, bias, and dispersion of estimated breeding values (EBV) for milk yield (MY), fat yield (FY), protein yield (PY), and somatic cell score (SCS) were estimated in a cross validation-based design. Accuracy (r^) was estimated by the correlation between EBV and corrected phenotype in a validation set. The accuracy (r^) of predictions using ssGBLUP increased by 13, 23, 19, and 20 percentage points for MY, FY, PY, and SCS for genotyped animals, compared with PBLUP. The accuracy of nongenotyped animals was not improved for MY and PY, but increased by 0.9 and 3.5 percentage points for FY and SCS. We used the linear regression (LR) method to quantify relative improvements in accuracy, bias (Δ^), and dispersion (b^) of EBV. Using the LR method, the relative improvements in accuracy of validation from PBLUP to ssGBLUP were 43%, 60%, 50%, and 48% for genotyped animals for MY, FY, PY, and SCS. Single-step GBLUP EBV were less underestimated (Δ^), and less overdispersed (b^) than PBLUP EBV for FY and PY. Pedigree-based BLUP EBV were close to unbiased for MY and SCS. Single-step GBLUP underestimated MY EBV but overestimated SCS EBV. Based on the average accuracy of 0.45 for ssGBLUP EBV obtained in this study, selection intensities according to the breeding scheme of Icelandic Cattle, and assuming a generation interval of 2.0 yr for sires of bulls, sires of dams and dams of bulls, genetic gain in Icelandic Cattle could be increased by about 50% relative to the current breeding scheme.     

Effects of carprofen on renal function and results of serum biochemical and hematologic analyses in anesthetized dogs that had low blood pressure during anesthesia

OBJECTIVE: To investigate effects of IV administered carprofen on indices of renal function and results of serum biochemical and hematologic analyses in dogs anesthetized with acepromazine-thiopentone-isoflurane that had low blood pressure during anesthesia. ANIMALS: 6 healthy Beagles. PROCEDURE: A randomized crossover study was conducted, using the following treatments: saline (0.9% NaCl solution)-saline, saline-carprofen, and carprofen-saline. Saline (0.08 ml/kg) and carprofen (4 mg/kg) were administered IV. The first treatment was administered 30 minutes before induction of anesthesia and immediately before administration of acepromazine (0.1 mg/kg, IM). Anesthesia was induced with thiopentone (25 mg/ml, IV) and maintained with inspired isoflurane (2% in oxygen). The second treatment was administered 30 minutes after onset of inhalation anesthesia. Blood gases, circulation, and ventilation were monitored. Renal function was assessed by glomerular filtration rate (GFR), using scintigraphy, serum biochemical analyses, and urinalysis. Hematologic analysis was performed. Statistical analysis was conducted, using ANOVA or Friedman ANOVA. RESULTS: Values did not differ significantly among the 3 treatments. For all treatments, sedation and anesthesia caused changes in results of serum biochemical and hematologic analyses, a decrease in mean arterial blood pressure to 65 mm Hg, an increase of 115 pmol/L in angiotensin II concentration, and an increase of 100 seconds in time required to reach maximum activity counts during scintigraphy. CONCLUSIONS AND CLINICAL RELEVANCE: Carprofen administered IV before or during anesthesia did not cause detectable significant adverse effects on renal function or results of serum biochemical and hematologic analyses in healthy Beagles with low blood pressure during anesthesia.     

Implication of nonlinear kinetics on risk estimation in carcinogenesis

Efforts in estimating carcinogenic risk in humans from long-term exposure to chemical carcinogens have centered on the problem of low-dose extrapolation. For chemicals with metabolites that interact with DNA, it may be more meaningful to relate tumor response to the concentration of the DNA adducts in the target organ rather than to the applied dose. Many data suggest that the relation between tumor response and concentration of DNA adducts in the target organ may be linear. This implies that the nonlinearities of the dose-response curve for tumor induction may be due to the kinetic processes involved in the formation of carcinogen metabolite--DNA adducts. Of particular importance is the possibility that the kinetic processes may show a nonlinear "hockey-stick" like behavior which results from saturation of detoxification or DNA repair processes. The mathematical models typically used for low-dose extrapolation are shown potentially to overestimate risk by several orders of magnitude when nonlinear kinetics are present.     

Genomic selection in American mink (Neovison vison) using a single-step genomic best linear unbiased prediction model for size and quality traits graded on live mink

Genomic selection relies on single-nucleotide polymorphisms (SNPs), which are often collected using medium-density SNP arrays. In mink, no such array is available; instead, genotyping by sequencing (GBS) can be used to generate marker information. Here, we evaluated the effect of genomic selection for mink using GBS. We compared the estimated breeding values (EBVs) from single-step genomic best linear unbiased prediction (SSGBLUP) models to the EBV from ordinary pedigree-based BLUP models. We analyzed seven size and quality traits from the live grading of brown mink. The phenotype data consisted of ~20,600 records for the seven traits from the mink born between 2013 and 2016. Genotype data included 2,103 mink born between 2010 and 2014, mostly breeding animals. In total, 28,336 SNP markers from 391 scaffolds were available for genomic prediction. The pedigree file included 29,212 mink. The predictive ability was assessed by the correlation (r) between progeny trait deviation (PTD) and EBV, and the regression of PTD on EBV, using 5-fold cross-validation. For each fold, one-fifth of animals born in 2014 formed the validation set. For all traits, the SSGBLUP model resulted in higher accuracies than the BLUP model. The average increase in accuracy was 15% (between 3% for fur clarity and 28% for body weight). For three traits (body weight, silky appearance of the under wool, and guard hair thickness), the difference in r between the two models was significant (P < 0.05). For all traits, the regression slopes of PTD on EBV from SSGBLUP models were closer to 1 than regression slopes from BLUP models, indicating SSGBLUP models resulted in less bias of EBV for selection candidates than the BLUP models. However, the regression coefficients did not differ significantly. In conclusion, the SSGBLUP model is superior to conventional BLUP model in the accurate selection of superior animals, and, thus, it would increase genetic gain in a selective breeding program. In addition, this study shows that GBS data work well in genomic prediction in mink, demonstrating the potential of GBS for genomic selection in livestock species.     

Trends in food intakes in Swedish adults 1986-1999: findings from the Northern Sweden MONICA (Monitoring of Trends and Determinants in Cardiovascular Disease) Study

OBJECTIVE: To determine changes in reported food frequency in adults between 1986 and 1999. DESIGN: Four consecutive cross-sectional surveys. SETTING: Counties of Norrbotten and V?sterbotten, Northern Sweden. SUBJECTS: The Northern Sweden MONICA (Monitoring of Trends and Determinants in Cardiovascular Disease) population, four independent cross-sectional surveys in 1986, 1990, 1994 and 1999. Randomly selected age-stratified samples of the population aged 25-64 years. Analysis is based on 2982 males and 3087 females who completed an 84-item food-frequency questionnaire. RESULTS: Between 1986 and 1999, average reported consumption of 3%-fat milk decreased from 42 to 7 intakes month(-1) in men and from 28 to 4 intakes month(-1) in women. Reported use of 1.5%-fat milk increased from 6 to 27 intakes month(-1) in men and from 6 to 24 in women. Monthly intakes of potatoes and root vegetables decreased from 38 to 27 in men and from 39 to 32 in women. Consumption of pasta increased from 4 to 7 intakes month(-1) in both sexes. Intakes of solid fats with 80% fat content dropped from 92 to 62 per month in men and from 78 to 52 per month in women, whereas use of 40%-fat spread increased from 12 to 22 intakes month(-1) in men and from 5 to 26 in women. Monthly intakes of vegetable oil increased from 3 to 12 in men and from 3 to 15 in women. The percentage of overweight or obese individuals (body mass index >25 kg m(-2)) increased from 52 to 65% in men and from 41 to 52% in women (P for linear trend in all these changes, <0.001). CONCLUSIONS: Our data indicate reduced consumption of foods with a high content of saturated fats. In spite of that, there is an unbroken trend towards increased obesity.     

Availability of organic nutrient sources and their effects on yield and nutrient recovery of tef [Eragrostis tef (Zucc.) Trotter] and on soil properties

Inadequate nutrient and organic‐matter supply constitutes the principal cause for declining soil fertility and productivity in much of sub‐Saharan Africa (SSA). In a survey in Gare Arera, the central Ethiopian highland, farmyard manure (FYM) and compost enriched with ash were identified as underutilized organic nutrient sources. Mustard meal, a by‐product of mustard‐seed oil production, is also locally available. On‐farm experiments were carried out on two major soil types (Nitisol and Vertisol) to study effects of the organic fertilizers, synthetic fertilizer (urea + triple superphosphate) and an unfertilized control on the yield and yield components of tef [Eragrostis tef (Zucc) Trotter] and selected soil properties. Application of organic fertilizers at an N rate equivalent to that of urea produced grain yields of 82% and 99% of that produced with urea on Nitisol and Vertisol, respectively. The apparent N recovery from urea, mustard meal, FYM, and compost was, respectively, 31%, 25%, 16%, and 28% on Nitisol and 23%, 17%, 26%, and 21% on Vertisol. The mean agronomic efficiency for the organic and synthetic fertilizers on Nitisol was 20 and 24 kg grain (kg N)^–1 applied, respectively, whereas on the Vertisol, it was 13 kg grain (kg N)^–1 for both. On Vertisol, tef was most responsive to FYM and on Nitisol, it was most responsive to compost. Soil N and P contents increased due to organic‐fertilizer application. The results showed that compost enriched with ash is a good choice on Nitisol while FYM works well on Vertisol. Mustard meal can be applied on both soils.