Success and virulence in Toxoplasma as the result of sexual recombination between two distinct ancestries

Toxoplasma gondii is a common human pathogen causing serious, even fatal, disease in the developing fetus and in immunocompromised patients. Despite its ability to reproduce sexually and its broad geographic and host range, Toxoplasma has a clonal population structure comprised principally of three lines. We have analyzed 15 polymorphic loci in the archetypal type I, II, and III strains and found that polymorphism was limited to, at most, two rather than three allelic classes and no polymorphism was detected between alleles in strains of a given type. Multilocus analysis of 10 nonarchetypal isolates likewise clustered the vast majority of alleles into the same two distinct ancestries. These data strongly suggest that the currently predominant genotypes exist as a pandemic outbreak from a genetic mixing of two discrete ancestral lines. To determine if such mixing could lead to the extreme virulence observed for some strains, we examined the F(1) progeny of a cross between a type II and III strain, both of which are relatively avirulent in mice. Among the progeny were recombinants that were at least 3 logs more virulent than either parent. Thus, sexual recombination, by combining polymorphisms in two distinct and competing clonal lines, can be a powerful force driving the natural evolution of virulence in this highly successful pathogen.     

Mechanisms of arsenite elimination by Thiomonas sp. isolated from Carnoulès acid mine drainage

Weathering of the arsenopyrite-rich tailings of the Carnoulès abandoned mining site (Gard, France) results in the formation of acid mine waters heavily loaded with arsenic. Dissolved arsenic present in the seepage waters is precipitated within a few meters from the bottom of the tailing dam by microorganisms. From these effluents, we have isolated and characterized a Gram negative bacterium involved in this bioremediation process. This bacterium, which belongs to the Thiomonas genus, is very efficient in removing arsenite from contaminated acidic waters by oxidizing it to arsenate, which precipitates.     

Strategies of exploitation of mammalian reservoirs by Bartonella species

ABSTRACT: Numerous mammal species, including domestic and wild animals such as ruminants, dogs, cats and rodents, as well as humans, serve as reservoir hosts for various Bartonella species. Some of those species that exploit non-human mammals as reservoir hosts have zoonotic potential. Our understanding of interactions between bartonellae and reservoir hosts has been greatly improved by the development of animal models for infection and the use of molecular tools allowing large scale mutagenesis of Bartonella species. By reviewing and combining the results of these and other approaches we can obtain a comprehensive insight into the molecular interactions that underlie the exploitation of reservoir hosts by Bartonella species, particularly the well-studied interactions with vascular endothelial cells and erythrocytes.     

Comparison of experimental methods for measuring infinite dilution volatilities of aroma compounds in water/ethanol mixtures

Several experimental methodologies exist for measuring volatilities; however, results show great dispersion and sometimes lack of agreement between different methods. The aim of our study was to compare the performance of three static headspace methods (vapor phase calibration, VPC; phase ratio variation, PRV; and liquid calibration static headspace, LC-SH) for determining gas/liquid partition coefficients of two aroma compounds in hydroalcoholic multicomponent solutions at infinite dilution. Comparison with literature data based on static and dynamic methods showed that PRV is simpler than VPC and LC-SH and that VPC and PRV are more accurate than LC-SH, which presented a significant bias (50% lower values).     

A multi-gene analysis of diversity of bartonella detected in fleas from Algeria

We report the molecular detection of several Bartonella species in 44 (21.5%) of 204 fleas from Algeria collected from 26 rodents and 7 hedgehogs. Bartonella elizabethae and B. clarridgeiae were detected in the fleas collected on hedgehogs. Bartonella tribocorum and B. elizabethae were detected in fleas collected from rats and mice, and sequences similar to an unnamed Bartonella sp. detected in rodents from China were detected in rats as well as a genotype of Bartonella closely related to Bartonella rochalimae detected in fleas collected on brown rats (Rattus norvegicus).     

Green roof ageing or Isolatic Technosol’s pedogenesis?

Purpose

Green roofs (GR) offer a way to improve several ecosystem services in cities. However, the performances of GR are basically considered as steady over time whereas they are living media subject to ageing that are rarely managed by their owners. This study transposes a pedological approach to evaluate changes in GR physical structure and chemical composition over time.

Materials and methods

A full-scale experimental plot with various vegetation cover was studied. A dedicated sampling strategy was implemented to monitor substrate’s evolution over 4 years. Then, physical and chemical characterisation (carbon and nitrogen contents, particle size distribution, porosity, soil water retention) was conducted and compared to results on the original substrate.

Results and discussion

The upper layer of the substrate (0 to 5 cm depth) contained a large amount of fine and short roots whereas the root density was much smaller in the lower layer of the substrate (5 to 10 cm depth). There was a global drop of the organic carbon content from 5 % in the initial substrate to 2 % in the 4-year-old substrate. On the contrary, the nitrogen concentration has increased by 0.4 % during the same period. The mesoporosity decreased drastically from 0.11 to 0.02 cm³ cm^?3. On the whole substrate, the <2-mm particles fraction was smaller after 4 years (12.5 %) than in the initial substrate (18.2 %) which was especially obvious in the upper horizon (9.5 %). Additionally, the monitored properties also varied significantly as a function of soil cover (sedum, moss and bare soil). Evidences of an early pedogenesis were highlighted such as poral evolution and fine particles eluviation.

Conclusions

In conclusion, the study demonstrated the effects of time, climate and vegetation on physical and chemical properties of green roof substrate. They are not only classified as Isolatic Technosols due to their composition and implementation; they also exhibit one of the major characteristic of young Technosols: a fast and intense pedogenesis.

     

Fertility of Technosols constructed with dam sediments for urban greening and land reclamation

Purpose

Fine sediment accumulates upstream of hydroelectric dams. To ensure that dams can operate properly, part of the sediment has to be dredged and land managed. In parallel, using topsoil from agricultural parcels for urban greening or land restoration is currently controversial because arable surface areas are decreasing. An alternative idea for protecting these natural resources consists in reusing fine dredged sediment to construct multifunctional soils. This agronomic use is only possible if sediment can provide acceptable physical and chemical properties for plant growth.

Materials and methods

Four dredged sediments with contrasted initial agronomic properties and one control soil were mixed or not with green waste compost (40% v/v) and used to construct triplicate 30-cm depth soils in lysimetric containers (1.11?×?0.71 m). The 30 constructed soils were exposed to the in situ conditions and sown with ryegrass (Lolium perenne). The evolution of soil chemical and physical properties and plant development were studied every 6 months for 18 months.

Results and discussion

Above- and below-ground biomass production of the constructed soils contrasted according to the sediment properties and to compost addition. A statistical approach identified eight soil parameters linked to biomass production. Among these parameters, soil structure, quantified from aggregate stability, played a fundamental role. A focus on physical properties confirmed that some sediments were only partially adapted to ryegrass support. Compost addition improved sediment physical properties over time, but caused temporary N deficiency during the first months after installation which limited shoot biomass production. Exogenous plant species developed on the constructed Technosols, especially on the soils where the lack of structure and N deficiency had the strongest effect.

Conclusions

All sediments were suitable for plant growth over the 18 months of the study. A few soil properties emerged as markers of the fertility of sediment-made Technosols. Among them, the soil structure was one of the most determining parameters. It can be assessed by measuring aggregate stability, macroporosity, the crustability index, and bulk density, while available nutrients (N, P, K) and pH seem sufficient to assess chemical fertility. The balance between the properties of the sediment-made Technosols and the needs of the plants seems to be an essential lever for the establishment of functional soil-plant systems for urban greening or for ecological restoration.

     

Interaction between cultivar and crop management effects on winter wheat diseases, lodging, and yield

The breeding of winter wheat (Triticum aestivum L.) for resistance to major fungal diseases has been a priority over the last 15 years in France. During this period, integrated low-input strategies have been developed for winter wheat, to cope with falling grain prices and growing environmental concerns. We investigated the interactions between genotype and management for disease and lodging intensities, and analysed their effects on yield within an integrated crop management (CM) context.

A multi-environment experimental network (13 locations, studied in three seasons, between 1999–2000 and 2001–2002) comprising several combinations of cultivars and CM systems was carried out. Four rule-based CM plans were defined, with a decrease in input level from CM1 (a high-input CM plan designed to maximise the yield of a given cultivar) to CM4 (a low-input system with no fungicide protection, no plant growth regulator applications, a sowing density 40% lower than for CM1, and 90 kg ha⁻¹ less N fertiliser than for CM1). Cultivars were clustered into three groups (cultivar type (CT) CT1–CT3), according to their scores for resistance to diseases, for the analysis of yield, whereas the resistance cultivar rating (CR) for each disease and for lodging was considered for the analysis of disease and lodging intensities.

For all diseases, CM had a significant effect (P<0.0001), with disease intensity increasing from CM1 to CM4, whereas CR had a negative effect (P<0.005). An interaction between CR and CM was also detected for all diseases (P<0.005) except eyespot. Lodging intensity decreased significantly from CM1 to CM4 (P<0.0001), and significant increases in lodging resistance score (P<0.0001) were not associated with a genotype by management interaction.

Lastly, yield was significantly affected by CM (P<0.0001), CT (P<0.0003), and CM by CT interaction (P=0.0023). Cultivar ranking differed as a function of CM for yield, demonstrating that breeding programs focusing on cultivar evaluation in high-input environments do not result in the selection of cultivars suited to low-input environments.     

Genome-wide association analysis of resistance to wheat spindle streak mosaic virus in bread wheat

Wheat spindle streak mosaic virus (WSSMV) is a major concern for cereal crops in Europe and North America. A strong increase in the occurrence of WSSMV has been observed in each French region where susceptible cultivars are cultivated. Most European bread wheat cultivars are resistant, but assessing the status of newly registered cultivars or breeding lines regarding WSSMV resistance is of importance. This paper describes a genome-wide association study carried out on a panel of 163 cultivars and tested for their resistance to WSSMV. Two regions on chromosomes 5B and 7D showed minor effects on WSSMV resistance. More importantly, a large genomic region on chromosome 2D explained most of the resistance to WSSMV. More than 99% of the cultivars carrying the AA genotype at the most associated marker (Excalibur_c15426_661) were resistant to WSSMV, while 100% of the cultivars showing the GG genotype were susceptible. This large genomic region of 45.8 Mb was found distal to the centromere and showed very high linkage disequilibrium. It is hypothesized that this region may be an alien introgression originating from a wild related species. This region contains a total of 2605 predicted genes based on the Chinese Spring IWGSC RefSeq v. 1.0 including genes potentially involved in plant disease resistance. A kompetitive allele-specific PCR (KASP) single-nucleotide polymorphism (SNP) marker was designed in order to identify breeding lines or registered cultivars resistant to WSSMV.     

Response of UK winter wheat cultivars to <Emphasis Type="Italic">Soil-borne cereal mosaic</Emphasis> and <Emphasis Type="Italic">Wheat spindle streak mosaic viruses</Emphasis> across Europe.

Twenty-one UK winter wheat cultivars were grown over three seasons at sites with natural inoculum sources of Soil-borne cereal mosaic virus (SBCMV) and Wheat spindle streak mosaic virus (WSSMV) located in France, Italy and the UK. Plants were assessed visually for virus symptoms and leaf extracts were tested for the presence of each virus using enzyme-linked immunosorbent assays (ELISA). Cultivars showing little or no foliar symptoms and low levels of virus in leaf tissue were classified as resistant to each virus. All the trials were taken to harvest and agronomic data collected. At the most heavily infected sites, severe symptoms of SBCMV were observed in all UK cultivars except Aardvark, Charger, Claire, Cockpit, Hereward and Xi 19. The latter cultivars exhibited either light or no symptoms and little or no SBCMV infection in leaves. In fields with WSSMV, the virus failed to develop in Italy, but was detected in the leaves of all the susceptible control cultivars at a site in France. However, no UK cultivar tested positive for WSSMV. Multi-site analysis indicated that the presence of WSSMV did not increase the impact of SBCMV on the height, thousand-grain weight or yield of UK cultivars. The wheat cultivars on test gave a similar response to SBCMV across three European countries. Possible sources of SBCMV resistance are discussed.