Validation of the DNDC-Rice model by using CH4 and N2O flux data from rice cultivated in pots under alternate wetting and drying irrigation management

The DNDC (DeNitrification-DeComposition)-Rice model, one of the most advanced process-based models for the estimation of greenhouse gas emissions from paddy fields, has been discussed mostly in terms of the reproducibility of observed methane (CH₄) emissions from Japanese rice paddies, but the model has not yet been validated for tropical rice paddies under alternate wetting and drying (AWD) irrigation management, a water-saving technique. We validated the model by using CH₄ and nitrous oxide (N₂O) flux data from rice in pots cultivated under AWD irrigation management in a screen-house at the International Rice Research Institute (Los Baños, the Philippines). After minor modification and adjustment of the model to the experimental irrigation conditions, we calculated grain yield and straw production. The observed mean daily CH₄ fluxes from the continuous flooding (CF) and AWD pots were 4.49 and 1.22?kg?C?ha^?1?day^?1, respectively, and the observed mean daily N₂O fluxes from the pots were 0.105 and 34.1?g?N?ha^?1?day^?1, respectively. The root-mean-square errors, indicators of simulation error, of daily CH₄ fluxes from CF and AWD pots were calculated as 1.76 and 1.86?kg?C?ha^?1?day^?1, respectively, and those of daily N₂O fluxes were 2.23 and 124?g?N?ha^?1?day^?1, respectively. The simulated gross CH₄ emissions for CF and AWD from the puddling stage (2 days before transplanting) to harvest (97 days after transplanting) were 417 and 126?kg?C?ha^?1, respectively; these values were 9.8% lower and 0.76% higher, respectively, than the observed values. The simulated gross N₂O emissions during the same period were 0.0279 and 1.45?kg?N?ha^?1 for CF and AWD, respectively; these values were respectively 87% and 29% lower than the observed values. The observed total global warming potential (GWP) of AWD resulting from the CH₄ and N₂O emissions was approximately one-third of that in the CF treatment. The simulated GWPs of both CF and AWD were close to the observed values despite the discrepancy in N₂O emissions, because N₂O emissions contributed much less than CH₄ emissions to the total GWP. These results suggest that the DNDC-Rice model can be used to estimate CH₄ emission and total GWP from tropical paddy fields under both CF and AWD conditions.     

Effects of root zone trenching on soil nitrogen dynamics in Japanese cedar and cypress plantations

The effects of root exclusion and planted tree species on soil nitrogen (N) dynamics were examined at two plantations, one planted with Japanese cedar and the other with Japanese cypress. We set up ten 1 × 1 × 0.2-m-deep trenched sites and ten untrenched control sites at each plantation. We measured the pool size and leaching of inorganic N at each site for 2 years and the net N mineralization 1 and 2 years after trenching. Despite similar soil conditions, the cedar plantation showed higher net N mineralization than the cypress plantation. Stopped tree uptake of N was expected to cause an increased pool size and leaching of inorganic N at the trenched sites. Nevertheless, we found no significant increase in those variables at both plantations. The trenched cypress sites showed no decrease in the net N mineralization during the 2 years after trenching. However, the net nitrification at the trenched cypress sites increased remarkably at the deeper horizons in comparison with that at the control sites. Enhanced nitrification might result from improved ammonium availability through root exclusion. Net N mineralization at the trenched cedar sites decreased more than 60% compared with that at the control sites 2 years after trenching. Higher nitrification potential at the cedar plantation and enhanced nitrification potential at the trenched cypress sites never resulted in increased leaching of N, due to added fine root litter which acted as an immobilization agent for excess N, thus preventing N loss.     

Comparison of two coniferous plantations in central Japan with respect to forest productivity, growth phenology and soil nitrogen dynamics

Japanese cypress (Chamaecyparis obtusa Endl.) and Japanese cedar (Cryptomeria japonica D. Don) are common species for plantation forestry in Japan. Cypress is conventionally planted on sites of low fertility whereas for cedar high fertility sites are used. Objectives of this study were to compare the productivities of cypress and cedar plantations grown on adjacent sites where common properties of soils, such as pH values and C and N contents, were similar, and to relate the N cycling at their site with productivities. The stem diameter of trees, aboveground litter production and fine root biomass were measured as indices of forest productivity. Parameters of N cycling included pools of total N and mineral N (ammonium + nitrate), annual N leaching, and potentially mineralizable N. The radial stem increment of the two tree species was similar. However, cedar site had higher total basal area and annual basal increment than cypress site reflecting higher tree density on the cedar site. Aboveground litter, fine root biomass, soil organic matter, and N turnover were higher on the cedar site than on the cypress site. However, litter production and fine root biomass per unit basal area was greater at the cypress site. Phenological pattern of stem growth and periodical litter production were similar for both species during the study period (1992–2000), but showed distinct annual variations caused by the fluctuation in the ambient temperature and precipitation. Mineral N content and the N mineralization potential were greater on the cedar site, indicating greater N availability and higher total tree productivity at the cedar site than those at the cypress site. When provided with more space in the canopy to expand more needles and in the soil to develop more fine roots to exploit sufficient resources, the individual cypress trees have the potential to grow faster. On fertile site and at lower tree density, thicker logs of cypress might be yielded.     

Sr Isotopic Signature in Plant-Derived Ca in Rain

The ⁸⁷Sr/⁸⁶Sr ratios in rain at three sites in Japan were about 0.706 to 0.712, whereas those at one site in central Korea were higher (0.711 to 0.716), reflecting the difference in geology between the two countries. Because the ⁸⁷Sr/⁸⁶Sr ratios of exchangeable sites in soil minerals are indistinguishable from those of associated plants, aerosol Sr originating from both can be grouped together as plant-derived Sr. Spatial and temporal variations in ⁸⁷Sr/⁸⁶Sr and Sr/Ca ratios in the rain suggest the presence of plant-derived Sr and Ca in addition to Sr and Ca derived from sea-salt, acid-soluble aeolian carbonate from China, and cement-derived carbonate. However, systematic data on the ⁸⁷Sr/⁸⁶Sr ratios and elemental concentrations of soils, plants, fly-ash, and road dust are required to put reliable constraints on the provenance of atmospheric Ca.     

Adapting the Profile Model to Calculate the Critical Loads for East Asian Soils by Including Volcanic Glass Weathering and Alternative Aluminum Solubility System

Adaptation of the steady-state soil chemistry model PROFILE was studied, on the following two parts, to calculate the critical loads for East Asian soils: (1) Dissolution rate coefficients of volcanic glass were derived from published experimental data, and calculated field weathering rate was compared with the rate estimated based on Sr isotope analysis. When BET surface area of sand fraction was regarded as mineral surface area, the calculated rates fairly agreed with the estimate, suggesting that sand fraction surface area is a reasonable estimate of weatherable mineral surface area of volcanic soils. (2) In repeated leaching experiments, Al solubility of a number of Japanese soils was explained by a model which assumed complexation of Al to soil organic matters. Such an Al solubility model is more appropriate for predicting soil chemistry than apparent gibbsite dissolution equilibrium.     

Bacterial degradation of antibiotic residues in marine fish farm sediments of Uranouchi Bay and phylogenetic analysis of antibiotic-degrading bacteria using 16S rDNA sequences

ABSTRACT:   Antibiotic residues in marine sediments of fish farms negatively influence microbial ecologic systems. The microbial degradation of antibiotic residues was experimentally examined in the marine sediments of Uranouchi Bay, to which one of five antibiotics was added. After incubation reducing physical factors, ampicillin, doxycycline, oxytetracycline, and thiamphenicol were significantly degraded, while josamycin maintained most of the initial amounts. The isolates resistant to ampicillin, josamycin, oxytetracycline, or thiamphenicol degraded each antibiotic in wide ranges of degrees, whereas the isolates degrading doxycycline were not obtained. Microbial degradation may contribute to the disappearance of ampicillin, doxycycline, oxytetracycline, and thiamphenicol in the fish farm. In contrast, the disappearance of josamycin would depend on physical factors, but the bacteria degrading josamycin at least exist in the marine sediments. Phylogenetic analysis using 16S rDNA sequences demonstrated that the antibiotic-resistant isolates formed several clusters in the Gram-positive bacterial group, the Flavobacterium–Cytophaga–Bacteroides group, and the proteobacteria subdivisions. The antibiotic-resistant bacterial population would be composed of various species including ubiquitous coastal bacterial groups. Several species of antibiotic resistant bacteria show antibiotic degradation activities, and appear to contribute to the disappearance of antibiotics in Uranouchi Bay.     

New melanin biosynthesis inhibitors and their structural similarities

Relationships between their activities as blast control agents, and their abilities to inhibit mycelial melanisation on a nutrient agar, are described for 103 substituted benzothiazol-2(3H)-ones, benzoxazol-2(3H)-ones, indolin-2-ones, quinolin-2(1H)-ones, 1,2,3,4-tetrahydroquinolin-2-ones, benzo-1,4-thiazin-3(2H)-ones and benz-1,4-oxazin-3(2H)-ones, and some corresponding thiones. Several compounds in the respective series had a high protective activity and an antimelanisation activity against the blast fungus Pyricularia oryzae; furthermore, there was a good correlation in both of these activities, indicating that these compounds belong to the group of melanin biosynthesis inhibitors. Structural similarities of these compounds can be identified as follows: (a) having a benzo-bicyclic ring system; (b) containing a nitrogen atom in one ring at a position alpha to the benzene ring system; and (c) substitution, at the ring nitrogen atom, at the peri position in the aromatic ring relative to the nitrogen atom, and at the position alpha to the nitrogen atom in the ring system, with a double bond such as in carbonyl and thiocarbonyl groups. Among the compounds that have been proposed as melanin biosynthesis inhibitors, the chemical structures of tricyclazole, pyroquilon, 4,5-dihydro-4-methyltetrazolo[1,5-a]quinazolin-5-one (PP-389), [1,2,4]-triazolo[4,3-a]quinoline and 1-methylquinolin-2(1H)-one exhibit the structural similarities described above; however, 4,5,6,7-tetrachlorophthalide, 2,3,4,5,6-pentachlorobenzyl alcohol and N-substituted-2,3,4,5-tetrachloro-6-(hydroxymethyl)benzamides do not have such similarities in their chemical structures.     

Potential of prolonged midseason drainage for reducing methane emission from rice paddies in Japan: a long-term simulation using the DNDC-Rice model

Water management practices, such as midseason drainage (MD) and intermittent irrigation, are effective in reducing methane (CH₄) emission from irrigated rice paddies. In a previous study in which two-year field experiments were conducted at nine sites across Japan, prolonged MD was found to reduce the seasonal total CH₄ emission by 30.5?±?6.7 % (mean?±?95 % confidence interval) compared with conventional MD without compromising rice grain yield. However, the degree of CH₄ reduction by water management is dependent on prevailing weather conditions. To estimate the mean effect of prolonged MD on CH₄ emission at the nine sites with rice straw application, we conducted a long-term (20 years) simulation using a process-based biogeochemistry model, the DNDC-Rice. The model adjusted using site-specific parameters was able to reproduce the measured magnitude of the total CH₄ emission and the suppressive effect of prolonged MD. The number of nonrainy days during MD explained the degree of CH₄ reduction for each site and all sites combined. In the simulation, mean reduction percentage was 20.1?±?5.6 % when acceptable prolonged MD (i.e., having less than 15 % yield loss) was applied compared with conventional MD. The discrepancy of the percentage between measurement and simulation was primarily attributable to longer nonrainy days during prolonged MD at several sites in the measurement than the mean of 20-year simulation. We therefore conclude that the long-term simulation better represents the mean reduction percentage of CH₄ emission by prolonged MD relative to conventional MD at the nine sites across Japan.     

Effects of Nitrogen Deposition on Nitrous Oxide Emissions from the Forest Floor

Increasing nitrogen deposition due to human activity might have a serious impact on ecosystem functions such as the nitrogen transformations conducted by microbes. We therefore focused on nitrous oxide (N₂O) production as an indicator of soil microbial activity. The rates of N₂O emission from the forest floor were measured every two weeks in two forest stands in the central part of Japan: a red pine stand at Kannondai and a deciduous stand at Yasato. Nitrogen deposition rates by throughfall were 30.6 kg N ha^?1 y^?1 at Kannondai and 15.7 at Yasato. The rates of N₂O emission ranged from 0.5 to 14.2 µg N m^?2 h^?1 (mean 4.5) at Kannondai and from 0.2 to 7.0 µg N m^?2 h^?1 (mean 2.3) at Yasato. The N₂O emission rate showed significant positive relationships with soil temperature and nitrogen deposition during the preceding two weeks. The annual emission rates of N₂O were 0.38 kg N ha^?1 y^?1 at Kannondai and 0.20 at Yasato. As a the annual nitrogen deposition, these rates were 1.23% at Kannondai and 1.27% at Yasato.     

Organic matter in density fractions of water-stable aggregates in silty soils: Effect of land use

The location of soil organic matter (SOM) within the soil matrix is considered a major factor determining its turnover, but quantitative information about the effects of land cover and land use on the distribution of SOM at the soil aggregate level is rare. We analyzed the effect of land cover/land use (spruce forest, grassland, wheat and maize) on the distribution of free particulate organic matter (POM) with a density <1.6 g cm⁻³ (free POM_<1.6), occluded particulate organic matter with densities <1.6 g cm⁻³ (occluded POM_<1.6) and 1.6-2.0 g cm⁻³ (occluded POM_1.6-2.0) and mineral-associated SOM (>2.0 g cm⁻³) in size classes of slaking-resistant aggregates (53-250, 250-1000, 1000-2000, >2000 μm) and in the sieve fraction <53 μm from silty soils by applying a combined aggregate size and density fractionation procedure. We also determined the turnover time of soil organic carbon (SOC) fractions at the aggregate level in the soil of the maize site using the ¹³C/¹²C isotope ratio. SOM contents were higher in the grassland soil aggregates than in those of the arable soils mainly because of greater contents of mineral-associated SOM. The contribution of occluded POM to total SOC in the A horizon aggregates was greater in the spruce soil (23-44%) than in the grassland (11%) and arable soils (19%). The mass and carbon content of both the free and occluded POM fractions were greater in the forest soil than in the grassland and arable soils. In all soils, the C/N ratios of soil fractions within each aggregate size class decreased in the following order: free POM_<1.6>occluded POM_<1.6-2.0>mineral-associated SOM. The mean age of SOC associated with the <53 μm mineral fraction of water-stable aggregates in the Ap horizon of the maize site varied between 63 and 69 yr in aggregates >250 μm, 76 yr in the 53-250 μm aggregate class, and 102 yr in the sieve fraction <53 μm. The mean age of SOC in the occluded POM increased with decreasing aggregate size from 20 to 30 yr in aggregates >1000 μm to 66 yr in aggregates <53 μm. Free POM had the most rapid rates of C-turnover, with residence times ranging from 10 yr in the fraction >2000 μm to 42 yr in the fraction 53-250 μm. Results indicated that SOM in slaking-resistant aggregates was not a homogeneous pool, but consisted of size/density fractions exhibiting different composition and stability. The properties of these fractions were influenced by the aggregate size. Land cover/land use were important factors controlling the amount and composition of SOM fractions at the aggregate level.