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1.
Heat stress adversely affects wheat production in many regions of the world and is particularly detrimental during reproductive
development. The objective of this study was to identify novel quantitative trait loci (QTL) associated with improved heat
tolerance in wheat (Triticum aestivum L.) and to confirm previous QTL results. To accomplish this, a recombinant inbred line (RIL) population was subjected to
a three-day 38°C daytime heat stress treatment during early grain-filling. At maturity, a heat susceptibility index (HSI)
was calculated from the reduction of three main spike yield components; kernel number, total kernel weight, and single kernel
weight. The HSI, as well as temperature depression (TD) of the main spike and main flag leaf during heat stress were used
as phenotypic measures of heat tolerance. QTL analysis identified 14 QTL for HSI, with individual QTL explaining from 4.5
to 19.3% of the phenotypic variance. Seven of these QTL co-localized for both TD and HSI. At all seven loci, the allele for
a cooler flag leaf or spike temperature (up to 0.81°C) was associated with greater heat tolerance, indicated by a lower HSI.
In a comparison to previous QTL results in a RIL population utilizing the same source of heat tolerance, seven genome regions
for heat tolerance were consistently detected across populations. The genetic effect of combining three of these QTL, located
on chromosomes 1B, 5A, and 6D, demonstrate the potential benefit of selecting for multiple heat tolerance alleles simultaneously.
The genome regions identified in this study serve as potential target regions for fine-mapping and development of molecular
markers for more rapid development of heat tolerant germplasm. 相似文献
2.
Francis W. Beecher Esten Mason Suchismita Mondal Joseph Awika Dirk Hays Amir Ibrahim 《Euphytica》2012,188(3):361-368
The goal of this study was to identify quantitative trait loci (QTLs) associated with the maintenance of wheat grain quality following post-anthesis heat stress in a recombinant inbred line (RIL) population. The response to heat stress was measured using the sodium dodecyl sulfate sedimentation test (SDSS), a significant predictor of bread baking quality. SDSS scores were used to identify QTLs associated with grain quality and QTLs associated with quality stability were identified based on percent change in SDSS score between the heat stress and control treatments. Four QTLs were identified, located one each on linkage groups 1B, 1D, 4A, and 7A. The 1B, 1D, and 4A QTLs were associated with grain quality; the QTL on linkage group 7A was associated with quality stability. To confirm the detected QTLs, eighty advanced lines grown at three Texas nurseries were tested for relationships between allelic polymorphism at QTL linked markers and quality traits. Quality trait stability in the advanced lines was estimated using the coefficient of variability (CV%) of quality traits between nurseries. The analysis supported the relationship of the predicted QTLs on linkage groups 1B, 1D, and 4A with quality traits. The confirmed QTLs may be used in marker assisted selection (MAS) to develop wheat lines possessing superior quality traits. In addition, identification of genetic regions associated with this trait will aid the identification of the underlying genes. 相似文献
3.
Atena?Haghighattalab Lorena?González Pérez Suchismita?Mondal Daljit?Singh Dale?Schinstock Jessica?Rutkoski Ivan?Ortiz-Monasterio Ravi?Prakash?Singh Douglas?Goodin Jesse?PolandEmail author 《Plant methods》2016,12(1):35
Background
Low cost unmanned aerial systems (UAS) have great potential for rapid proximal measurements of plants in agriculture. In the context of plant breeding and genetics, current approaches for phenotyping a large number of breeding lines under field conditions require substantial investments in time, cost, and labor. For field-based high-throughput phenotyping (HTP), UAS platforms can provide high-resolution measurements for small plot research, while enabling the rapid assessment of tens-of-thousands of field plots. The objective of this study was to complete a baseline assessment of the utility of UAS in assessment field trials as commonly implemented in wheat breeding programs. We developed a semi-automated image-processing pipeline to extract plot level data from UAS imagery. The image dataset was processed using a photogrammetric pipeline based on image orientation and radiometric calibration to produce orthomosaic images. We also examined the relationships between vegetation indices (VIs) extracted from high spatial resolution multispectral imagery collected with two different UAS systems (eBee Ag carrying MultiSpec 4C camera, and IRIS+ quadcopter carrying modified NIR Canon S100) and ground truth spectral data from hand-held spectroradiometer.Results
We found good correlation between the VIs obtained from UAS platforms and ground-truth measurements and observed high broad-sense heritability for VIs. We determined radiometric calibration methods developed for satellite imagery significantly improved the precision of VIs from the UAS. We observed VIs extracted from calibrated images of Canon S100 had a significantly higher correlation to the spectroradiometer (r = 0.76) than VIs from the MultiSpec 4C camera (r = 0.64). Their correlation to spectroradiometer readings was as high as or higher than repeated measurements with the spectroradiometer per se.Conclusion
The approaches described here for UAS imaging and extraction of proximal sensing data enable collection of HTP measurements on the scale and with the precision needed for powerful selection tools in plant breeding. Low-cost UAS platforms have great potential for use as a selection tool in plant breeding programs. In the scope of tools development, the pipeline developed in this study can be effectively employed for other UAS and also other crops planted in breeding nurseries.4.
5.
QTL for yield, yield components and canopy temperature depression in wheat under late sown field conditions 总被引:1,自引:1,他引:0
R. Esten Mason Dirk B. Hays Suchismita Mondal Amir M. H. Ibrahim Bhoja R. Basnet 《Euphytica》2013,194(2):243-259
A wheat (Triticum aestivum L.) recombinant inbred line (RIL) population was used to identify quantitative trait loci (QTL) associated with yield, yield components, and canopy temperature depression (CTD) under field conditions. The RIL population, consisting of 118 lines derived from a cross between the stress tolerant cultivar ‘Halberd’ and heat stress sensitive cultivar ‘Karl92’, was grown under optimal and late sown conditions to impose heat stress. Yield and yield components including biomass, spikes m?2, thousand kernel weight, kernel weight and kernel number per spike, as well as single kernel characteristics were determined. In addition, CTD was measured during both moderate (32–33 °C) and extreme heat stress (36–37 °C) during grain-filling. Yield traits showed moderate to high heritability across environments with a large percentage of the variance explained by genetic effects. Composite interval mapping detected 25 stable QTL for the 15 traits measured, with the amount of phenotypic variation explained by individual QTL ranging from 3.5 to 27.1 %. Two QTL for both yield and CTD were co-localized on chromosomes 3BL and 5DL and were independent of phenological QTL. At both loci, the allele from Halberd was associated with both higher yield and a cooler crop canopy. The QTL on 3BL was also pleiotropic for biomass, spikes m?2, and heat susceptibility index. This region as well as other QTL identified in this study may serve as potential targets for fine mapping and marker assisted selection for improving yield potential and stress adaptation of wheat. 相似文献
6.
R. Esten Mason Suchismita Mondal Francis W. Beecher Arlene Pacheco Babitha Jampala Amir M. H. Ibrahim Dirk B. Hays 《Euphytica》2010,174(3):423-436
Heat stress adversely affects wheat production in many regions of the world and is particularly detrimental during reproductive
development and grain-filling. The objective of this study was to identify quantitative trait loci (QTL) associated with heat
susceptibility index (HSI) of yield components in response to a short-term heat shock during early grain-filling in wheat.
The HSI was used as an indicator of yield stability and a proxy for heat tolerance. A recombinant inbred line (RIL) population
derived from the heat tolerant cultivar ‘Halberd’ and heat sensitive cultivar ‘Cutter’ was evaluated for heat tolerance over
2 years in a controlled environment. The RILs and parental lines were grown in the greenhouse and at 10 days after pollination
(DAP) half the plants for each RIL received a three-day heat stress treatment at 38°C/18°C day/night, while half were kept
at control conditions of 20°C/18°C day/night. At maturity, the main spike was harvested and used to determine yield components.
A significant treatment effect was observed for most yield components and a HSI was calculated for individual components and
used for QTL mapping. QTL analysis identified 15 and 12 QTL associated with HSI in 2005 and 2006, respectively. Five QTL regions
were detected in both years, including QTL on chromosomes 1A, 2A, 2B, and 3B. These same regions were commonly associated
with QTL for flag leaf length, width, and visual wax content, but not with days to flowering. Pleiotropic trade-offs between
the maintenance of kernel number versus increasing single kernel weight under heat stress were present at some QTL regions.
The results of this study validate the use of the main spike for detection of QTL for heat tolerance and identify genomic
regions associated with improved heat tolerance that can be targeted for future studies. 相似文献
7.
8.
Kasar Sharayu Mishra Suchismita Omori Yasutaka Sahoo Sarata Kumar Kavasi Norbert Arae Hideki Sorimachi Atsuyuki Aono Tatsuo 《Journal of Soils and Sediments》2020,20(1):392-403
Journal of Soils and Sediments - Huge amounts of radiocesium, radiostrontium, and fission products were released into the atmosphere during the Fukushima Daiichi Nuclear Power Plant (FDNPP)... 相似文献
9.
Learnmore Mwadzingeni Sandiswa Figlan Hussein Shimelis Suchismita Mondal Toi J. Tsilo 《Journal of Crop Improvement》2017,31(5):648-672
Yield gains from rain-fed wheat (Triticum aestivum L.) production, particularly in areas experiencing intermittent and terminal dry spells, can be realized through integrated breeding with promising genetic and genomic resources using appropriate methodologies. This enables targeted recombination of novel genes for drought tolerance and selection of desirable genotypes. Continuous exploration of new sources of genetic variation and introgression of suitable genes into elite drought-susceptible genotypes, including via transgenic approaches, and the use of genome editing could offer exciting future prospects in acquiring drought-tolerant wheat genotypes. This review highlights the available genetic resources, the major wheat genebanks and databases, as well as the breeding methodologies for drought tolerance in wheat, including prebreeding, conventional breeding, hybrid breeding, and genomics-assisted breeding. The potential of genetic modification through the transgenic and genome-editing approaches is also discussed. Emphasis is placed on how best these breeding methods can be brought together to develop strategies aimed at improving drought tolerance in wheat. 相似文献
10.
Mondal S Tilley M Alviola JN Waniska RD Bean SR Glover KD Hays DB 《Journal of agricultural and food chemistry》2008,56(1):179-184
In wheat ( Triticum aestivum L), the synthesis of high molecular weight (HMW) glutenins (GS) is controlled by three heterologous genetic loci present on the long arms of group 1 wheat chromosomes. The loci Glu-A1, Glu-B1, and Glu-D1 and their allelic variants play important roles in the functional properties of wheat flour. This study focused on understanding the functionality of these protein subunits on tortilla quality. Near-isogenic wheat lines in which one or more of these loci were absent or deleted were used. Tortillas were prepared from each deletion line and the parent lines. The elimination of certain HMW-GS alleles alter distinct but critical aspects of tortilla quality such as diameter, shelf stability, and overall quality. Two deletion lines possessing HMW-GS 17 + 18 at Glu-B1 and deletions in Glu-A1 and Glu-D1 had significantly larger tortilla diameters, yet tortilla shelf life was compromised or unchanged from the parent lines used to develop the deletion lines or the commercial tortilla flour used as a control. Alternatively, a deletion line possessing Glu-A1 and Glu-D1 (HMW-GS 1, 5 + 10) and a deletion in Glu-B1 also significantly improved tortilla diameters. Whereas the increase in diameter was less than the line possessing only HMW-GS 17 + 18 at Glu-B1, the stability of the tortillas were, however, maintained and improved as compared to the parent lines containing a full compliment of HMW-GS. Thus, the presence of subunits 5 + 10 at Glu-D1 alone or in combination with subunit 1 at Glu-A1 appears to provide a compromise of improvement in dough extensibility for improved tortilla diameters while also providing sufficient gluten strength to maintain ideal shelf stability. 相似文献