Bovine tuberculosis in South Darfur State, Sudan: an abattoir study based on microscopy and molecular detection methods

Bovine tuberculosis (BTB) is a widespread zoonosis in developing countries but has received little attention in many sub-Saharan African countries including Sudan and particularly in some parts such as Darfur states. This study aimed to detect bovine tuberculosis among caseous materials of cattle slaughtered in abattoirs in South Darfur State, Sudan by using microscopic and PCR-based methods. The study was a cross-sectional abattoir-based study which examined a total of 6,680 bovine carcasses for caseous lesions in South Darfur State between 2007 and 2009. Collected specimens were examined for the presence of acid-fast bacilli (AFB) by using microscopic and culture techniques. Isolated mycobacteria were identified by selected conventional cultural and biochemical tests in comparison to a single tube multiplex PCR (m-PCR) assay which detect Mycobacterium bovis-specific 168-bp amplicons. Of the total 6,680 slaughtered cattle examined in South Darfur, 400 (6 %) showed caseations restricted to lymph nodes (86.8 %) or generalized (13.2 %). Bovine tuberculosis was diagnosed in 12 (0.18 %), bovine farcy in 59 (0.88 %), unidentified mycobacteria in 6 (0.09 %), and missed or contaminated cultures in 7 (0.1 %). Out of 18 cultures with nonbranching acid-fast rods, 12 amplified unique 168-bp sequence specific for M. bovis and subsequently confirmed as M. bovis. With the exception of the reference M. tuberculosis strains, none of the remaining AFB amplified the 337-bp amplicon specific for M. tuberculosis. It could be concluded that bovine tuberculosis is prevalent among cattle in South Darfur representing 4.5 % from all slaughtered cattle with caseous lesions. The study sustains microscopy as a useful and accessible technique for detecting AFB. m-PCR assay proved to be valuable for confirmation of BTB and its differentiation from other related mycobacteriosis, notably bovine farcy.     

Potassium distribution in root and non‐root zones of two cotton genotypes and its accumulation in their organs as affected by drought and potassium stress conditions

A rhizobox experiment was conducted to compare the differences of soil potassium (K) distribution and absorption between two cotton (Gossypium hirsutum L.) genotypes under drought and K‐deficit conditions. Treatments included two levels of water (drought and optimum soil moisture: 25% and 35% volumetric water content) and K fertilizer rates (0 and 0.48 g potash kg^?1 soil) applied to two cotton genotypes (namely HEG and LEG). Both the genotypes showed significant differences in total K accumulation without exogenous K addition. After absorption, soil content of the readily available potassium (RAK) decreased rapidly. This promoted the conversion of the mineral K into slowly available potassium (SAK). Drought significantly decreased the cotton growth and K use efficiency, and thereby reduced the effect of K fertilizer. Consequantly, the contents of RAK and SAK were greatly increased. However, K bioavailability was decreased under water stress conditions. Differences in root parameters and soil microorganisms between two cotton genotypes were significantly increased and had marked relations with available soil K contents. This study provides important information for understanding the mechanism of K use efficiency, especially under water and K stress.     

Interactive effects of biochar and micronutrients on faba bean growth,symbiotic performance,and soil properties

Leguminous crops are significantly involved in the global symbiotic biological N₂ Fixation (BNF), an eco‐friendly process in the agriculture system. Biochar is considered as a vital amendment in improving growth and quality of crops and soils. Few investigations have been conducted to determine the combination effect of biochar with microelements on growth of legumes and soil properties. This study was designed to study the effect of soybean straw‐derived biochar (SSDB) with or without microelements on soil microbial and chemical properties, growth, yield, and seed chemical composition of faba bean (Vicia faba L.). Results revealed that dehydrogenase (DHA) and phosphatase (P‐ase) activities were markedly improved with the increase of SSDB rates under addition of microelements and their highest values were recorded after 90 d. Significant increases were noticed in nodulation activities, nodulation numbers (30.1–72.8), concentrations of N (1.62–1.93%), P (0.15–0.21%), and K (0.53–0.67%), and seed chemical constituents due to the addition of SSDB in the presence of microelements. Moreover, the combination of biochar with microelements caused significant changes in microbial counts. Overall, this investigation shows the potential and role of SSDB in enhancing the growth quality of faba bean seeds as well as an improvement of soil characteristics.     

Assessment of Marginal Quality Water for Sustainable Irrigation Management: Case Study of Bahr El-Baqar Area,Egypt

Treated wastewater (TWW) is an imperative nonconventional water resource for reuse in irrigation to cope with the water shortage and agricultural expansion in Egypt. The Bahr El-Baqar drain in Sharqia, Egypt, is one of the main drains in the Nile Delta that receives various types of wastewater. Monitoring and assessing the drain’s water quality were achieved by collecting georeferenced water samples along the drain during the 2015 summer and winter cropping seasons. Chemical, microbial, and parasitic analyses were performed. Additionally, surface soil samples irrigated with the drain water were gathered from the adjacent area to quantify the main physicochemical properties. Water analysis results revealed that the concentrations of most trace elements were within international standards and the Egyptian allowable levels for TWW reuse in agriculture. Oxygen depletion was observed for all samples collected. The microbial analysis indicated that there was fecal coliform contamination (>1000 per 100 mL) in the summer and winter samples. Concentrations of PO₄ and SO₄ were within the permissible level for irrigation use, whereas NH₄, NO₃, and MoO₄ concentrations were higher than the recommended values for reusing Bahr El-Baqar water in irrigation. Based on the soil analysis results, Cd contamination was observed, whereas the Pb concentration in soils was slightly higher than its normal range. Mixing Bahr El-Baqar water with freshwater and implementing appropriate on-farm treatment before the reuse are recommended as a prerequisite for reusing Bahr El-Baqar water for irrigation. Bio-diesel fuel and energy oil crops are recommended for the studied region.     

Verte and Romaine lettuce varieties (Lactuca sativa) show differential responses to high NaCl concentrations

In this study, we report on the relationship between individual antioxidant carotenoids, phenolic fractions, and flavonoids and attenuating NaCl toxicity in two contrasting varieties of lettuce (Lactuca sativa L., var. Verte and Romaine), as a means of developing more precise targets for lettuce breeding. In seedling leaves, carotenoid levels increased under NaCl stress in Verte, but remained unchanged in Romaine. Chlorogenic acid (CGA), a soluble polyphenol abundantly present in leaves, was the only phenolic acid that accumulated significantly in both varieties and was predominant under salinity. Remarkably, CGA was more prominent in Verte than Romaine at moderate salinity levels (100 mM). Foliar flavonoid levels were also differentially increased in both seedling types grown under 100 mM NaCl, but dropped significantly in both varieties under 200 mM NaCl. Germination, which was overall more salt‐resistant in Romaine, was significantly increased under salt stress by application of low dosage (10^–6 to10^–5 M) of CGA to Verte, but not to Romaine. These results suggest that CGA is involved in modulating NaCl‐induced oxidative‐stress responses during seed germination in Verte.     

Gender differences in the rat corpus callosum: An ultrastructure study

Sexual dimorphism exists at all levels of the nervous system, from genetic, anatomical and system levels. The sexual dimorphism in the axonal content of the corpus callosum (CC) has always been controversial; hence, the aim of this study was to analyse the differences in total, myelinated and unmyelinated axons density of various regions of the CC between male and female rats. To assess that, six pairs of adult male and female rats were perfused and the CC was removed and sectioned. Four sections from different subregions of the corpus callosum that represent the genu, anterior body, posterior body, and splenium, were stained, and electron microscopic images were captured using stereological guidelines. Later, the axons density for each subregion was calculated and compared between males and females. The findings of the present study indicated region‐specific differences in the myelinated, unmyelinated or the ratio of myelinated/total axons in the CC between male and female rats.     

Genetic diversity and pathogenicity of <Emphasis Type="Italic">Fusarium oxysporum</Emphasis> isolated from wilted Welsh onion in Japan

Thirty isolates of Fusarium oxysporum from wilted Welsh onion plants were examined for their diversity in nucleotide sequences of the ribosomal DNA (rDNA) intergenic spacer (IGS) region and for pathogenicity with regard to five Welsh onion cultivars. Phylogenetic analysis based on the IGS sequences revealed polyphyletic origins of the isolates and a relationship between phylogeny and pathogenicity; low virulence isolates differed genetically from those with high and moderate virulence. Mating type analysis revealed that all F. oxysporum isolates were MAT1-1 idiomorphs, suggesting that the pathogens may be clonal in the fields examined.     

Pathogenic variation and molecular characterization of <Emphasis Type="Italic">Fusarium</Emphasis> species isolated from wilted Welsh onion in Japan

Thirty-two isolates of Fusarium species were obtained from wilted Welsh onion (Allium fistulosum) grown on nine farms from six regions in Japan and identified as F. oxysporum (18 isolates), F. verticillioides (7 isolates), and F. solani (7 isolates). The pathogenicity of 32 isolates was tested on five commercial cultivars of Welsh onion and two cultivars of bulb onion in a seedling assay in a greenhouse. The Fusarium isolates varied in the degree of disease severity on the cultivars. Five F. oxysporum isolates (08, 15, 17, 22, and 30) had a higher virulence on the cultivars than the other isolates. The host range of these five isolates was limited to Allium species. Molecular characterization of Fusarium isolates was performed using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the internal transcribed spacer (ITS) regions of ribosomal DNA. The 32 isolates were grouped into eight types (four types for F. oxysporum, one for F. verticillioides, and three for F. solani). Restriction patterns of the ITS region were not related to pathogenicity. However, the haplotypes obtained with five enzymes (RsaI, HinfI, HaeIII, ScrFI, and MspI) and the phylogenetic analysis permitted the discernment of the three Fusarium species. The PCR-RFLP analysis should provide a rapid, simple method for differentiating Fusaruim species isolated from wilted Welsh onion in Japan.