Genetic diversity and population structure of Brachiaria brizantha (A.Rich.) Stapf accessions from Ethiopia

Brachiaria is a tropical, warm-season grass native to Africa. It is an extensively cultivated forage in the tropics with proven benefits on livestock productivity. Brachiaria is well-known for high biomass production, animal nutrition, carbon sequestration, biological nitrification inhibition, soil conservation, and adaptation to drought and low fertility soils. However, the use of Brachiaria grass for fodder production in Africa has been little explored largely due to lack of cultivars suitable to different production environments. The exploration and use of natural diversity is fundamental for an efficient Brachiaria breeding program. We analysed genetic diversity and population structure of 112 Ethiopian Brachiaria brizantha accessions using 23 microsatellite markers. A total of 459 alleles were detected with an average polymorphic information content of 0.75 suggesting high discriminating ability of these markers. The molecular variance analysis showed a high contribution (86%) of within-cluster differences to the total variation. Three allelic pools revealed by STRUCTURE analysis in 112 accessions were in agreement with the clustering patterns seen in neighbor-joining tree and principal coordinates analyses. A core collection of 39 B. brizantha accessions was constituted. This study concludes a high genetic diversity of Ethiopian B. brizantha accessions and their importance in Brachiaria breeding programs.     

Genetic diversity analysis of common bean (Phaseolus vulgaris L.) genotypes for resistance to Mexican bean weevil (Zabrotes subfasciatus), using single nucleotide polymorphism and phenotypic markers

ABSTRACT

The objective of this study was to examine the genetic diversity present among 297 common bean genotypes using 2554 SNPs and 12 insects and seed-related traits. The phenotyping was done under laboratory condition while the genotyping was conducted by using the Illumina SNP BeadChip. High phenotypic diversity among traits were recorded, ranging from 0.87 to 0.96, with a mean of 0.92. Principal component and discriminant analyses identi?ed four PCs and three discriminant functions, which explained 82% and 100% of the total phenotypic variations among genotypes, respectively. Polymorphic Information Content ranged from 0.21 to 0.38, with a mean of 0.34. The mean gene diversity among genotypes ranged from 0.24 to 0.50, with a mean of 0.44. Genetic distance ranged from 0.19 to 0.82, with a mean of 0.62, while the phenotypic distance ranged from 0.00 to 1.00, with a mean of 0.64 were observed aamong genotypes. The analysis of molecular variance revealed highly signi?cant differences (p<0.001) among and within individuals and among populations. Both the SNP and the phenotypic markers grouped the 297 genotypes into two major distinct clusters and three sub-clusters. This information is useful for identi?cation and development of common bean germplasm with economically valuable traits and the conservation and utilization of genotypes.     

Effects of feeding different levels of cooked and sun dried fish offal on carcass traits of growing Rhode Island Red chicks

Fourteen days old Rhode Island Red chicks were used to evaluate effects of processed fish offal (fishmeal) on DM intake (DMI), body weight gain (BWG), feed conversion ratio (FCR = DMI/BWG) and carcass traits. Ten chicks were assigned to each of 3 replicates of 6 diets (T₁, T₂, T₃, T₄, T₅, T₆, containing 0, 3.32, 6.64, 9.96, 13.28 and 16.6% fishmeal, respectively, having 18.44–19.82% CP). After 77 days of ad-lib feeding, 3 male and 3 female chicks per treatment were fasted overnight, killed and body parts weighed. T₁ had lowest but T₆ highest (p ≤ 0.001) daily intakes of 68.5 and 77.0 g DM head⁻¹, 13.3 and 14.8 g CP head⁻¹ and 231 and 243 kcal ME head⁻¹, respectively. BWG (10.7 g head⁻¹ d⁻¹), FCR (6.79), weights of carcass (569 g), breast (160 g) and total edible (676 g) and dressing % (66%) of T₁ (0% fishmeal) was smaller (p ≤ 0.001) than those of fishmeal groups {12.8 to 13.5 g head⁻¹ d⁻¹; 5.83 to 6.35 g; 671 to 729 g; 196 to 219 g; 807 to 876 g and 67 to 68%, respectively}. Best results of BWG, FCR and carcass traits were obtained at 9.96% fishmeal inclusion level; however acceptable results could be obtained up to 12.5%.     

Zero-Inflated Discrete Statistical Models for Fecundity Data Analysis in Channel Catfish, Ictalurus punctatus

Traditional fecundity analysis, either as number of eggs per body weight of female or number of eggs per gram of egg mass, pay little attention to females that do not spawn. These fecundity variables contain a high proportion of zeroes either because of the absence of eggs or the inability to recover the eggs. Zero‐inflated discrete generalized linear models are an alternative method that can be developed to take into account females that do not spawn. In this case study, we propose discrete generalized linear models that use specially constructed mixture models to handle the excess zeroes such as the zero‐inflated Poisson and zero‐inflated negative binomial models. These models have the advantage of modeling fecundity simultaneously with the probability of spawning. The results show that age was the most significant factor influencing the number of eggs per gram of egg mass, while period of spawning was the most significant factor influencing the number of eggs per female body weight. These were also the most important variables that significantly affected the probability of successful spawning. Model residual diagnostics show that zero‐inflated models exhibit superior performance compared to the traditional models like analysis of covariance, Poisson regression, and negative binomial regression models.     

Feed intake and utilization in sheep fed graded levels of dried moringa (<Emphasis Type="Italic">Moringa stenopetala</Emphasis>) leaf as a supplement to Rhodes grass hay

The effects of feeding graded levels of dried moringa (Moringa stenopetala) leaf on intake, body weight gain (BWG), digestibility and nitrogen utilization were studied using male sheep (BW of 13.8 ± 0.12 kg). Six sheep were randomly allocated to each of the four treatment diets: Rhodes grass (Chloris gayana) hay offered ad libitum (T1), hay + 150 g moringa leaf (T2), hay + 300 g moringa leaf (T3), hay + 450 g moringa leaf (T4) were offered daily. A 7-day digestibility trial and an 84-day growth experiments were conducted. Dry matter (DM), organic matter (OM) and crude protein (CP) intakes increased (P < 0.05) with increasing levels of moringa leaf in the diets. Sheep fed T2, T3 and T4 diets gained (P < 0.05) 40.2, 79.1 and 110.1 g/head/day, respectively, while the control group (T1) lost weight (−13.3 g/head/day). The apparent digestibilities of DM, OM, neutral detergent fibre and acid detergent fibre were similar (P > 0.05) among treatments. The digestibility of dietary CP increased (P < 0.05) with increasing levels of moringa leaf, but there was no significant difference between T2 and T3 diets. The nitrogen (N) intake and urinary N excretion increased (P < 0.05) with increasing levels of moringa leaf. The N retention was highest (P < 0.05) for 450 g moringa leaf supplementation. The control group was in a negative N balance. Supplementing a basal diet of Rhodes grass hay with dried moringa leaves improved DM intake, BWG and N retention. It is concluded that M. stenopetala can serve as a protein supplement to low-quality grass during the dry season under smallholder sheep production system.     

Logit models for evaluating spawning performance of channel catfish, Ictalurus punctatus (Rafinesque)

Broodstock evaluations are often measured by variables such as spawning success, fecundity, fertilization and hatching rates, usually expressed as percentage values. Outcomes are generally analysed as continuous random variables, assuming that they follow a normal distribution. Ordinary linear regression models (e.g. analysis of variance) as well as χ² analysis are typically applied. However, these models may not be the most appropriate as a number of test criteria may not be met. For example, spawning success outcomes are inherently discrete and non‐negative data and hence their distribution is not likely to be normal. As these models may not be the most appropriate, a case study using logit analysis as an alternative method for the evaluation of this type of data is presented by considering the response as binary data (spawned versus did not spawn). An exact version of logit analysis was performed due to the sparseness of the data. The results demonstrate that appropriate statistical models provide better insight into the cause–effect relationships that exist between control variables and the dependent variable (likelihood of spawning in this case). As would be expected, each strain of fish responded somewhat differently to the test variables. Changing the protein level of the diet from 32% to 42% or increasing the feeding frequency from three to six times per week either did not influence spawning or negatively affected spawning respectively. Additionally, older fish performed better than younger fish and the early spawning period was better than the later spawning period, regardless of strain. These responses, however, were only detected using logit analysis, which is a more sensitive test and would thus be recommended for this type of data.     

Influence of variation in water temperature on survival,growth and yield of Pacific white shrimp Litopenaeus vannamei in inland ponds for low‐salinity culture

There is considerable interest in the culture of whiteleg shrimp (Litopenaeus vannamei) in inland low‐salinity water in Alabama and other states in the Sunbelt region of the US. However, the growing season is truncated as compared with tropical or subtropical areas where this species is typically cultured, and temperature is thought to be a major factor influencing shrimp production in the US. This study, conducted at Greene Prairie Aquafarm located in west‐central Alabama, considered water temperature patterns on a shrimp farm in different ponds and different years; and sought possible effects of bottom water temperature in ponds on variation in shrimp survival, growth and production. Water temperature at 1.2 m depth in 22 ponds and air temperature were monitored at 1‐hr intervals during the 2012, 2013, 2014 and 2015 growing seasons. Records of stocking rates, survival rates and production were provided by the farm owner. Correlation analysis and linear mixed model analysis of variance were used. Results showed that hourly water temperatures differed among ponds. The range of water temperature in each pond explained 41% of the variance in average final weight of shrimp harvested from each pond. In conclusion, the results suggest that variation in water temperature patterns has considerable influence on shrimp growth and survival in ponds.     

Effects of Varying Dietary Protein Levels and Feeding Frequencies on Condition and Reproductive Performance of Channel Catfish to Produce Hybrid Catfish

The interspecific hybridization of channel catfish, Ictalurus punctatus, females with blue catfish, I. furcatus, males has been identified as a method to further improve production; however, lack of spawning success has affected its commercial application. To facilitate our understanding of the interaction of brood stock nutrition and reproductive performance, we evaluated the interaction of feed quality and feeding frequency. Channel catfish females were classified into two genetic groups, namely, high and low spawning. The treatments were offered during the spring season 70–90 d prior to the start of the spawning season. Induced reproduction was performed using luteinizing hormone releasing hormone analog. Condition of the fish as well as reproductive performance using spawning success, egg production, egg size, and fertilization at 48 h were determined. Changing protein level of the diet from 32 to 42% did not influence spawning, fecundity, or fertilization, but affected egg size and biochemical composition of the eggs. Increasing the feeding frequency from three to six times per week negatively affected spawning in one of the two genetics groups, did not affect egg production and egg fertilization, but had a significant effect on egg size. Older fish performed better than younger fish in terms of spawning success and egg production.