Macrophomina phaseolina–host interface: Insights into an emerging dry root rot pathogen of mungbean and urdbean,and its mitigation strategies

The necrotrophic fungus Macrophomina phaseolina is an important pathogen of many crops, such as strawberry, maize, sorghum, potato, soybean, chickpea, and pigeon pea, and causes multiple diseases throughout the world. The microsclerotia, which are the source of primary inoculum, play an important role in the survival and spread of M. phaseolina, as well as disease initiation and development. South Asia has unique characteristics relative to countries with temperate climates, that is, warm temperature, high humidity, and reduced rainfall that influence the interaction between M. phaseolina and its hosts. This review discusses the distribution pattern, pathogen background, pathogenic and genetic variability, and the mitigation strategies applied worldwide to reduce the impact of diseases caused by M. phaseolina with a focus on dry root rot of mungbean and urdbean in South Asia. Dry root rot, caused by M. phaseolina, is an emerging disease of mungbean and urdbean in South Asia. Dry root rot research in South Asia has focused mostly on adopting disease mitigation strategies evolved in tropical to temperate climates such as cultural practices, chemical control, genetic resistance, and biological control. Although the disease is prevalent in most of South Asia, there have been very few studies on M. phaseolina and its host–parasite interaction. Therefore, additional research is required in this domain, which could result in improved understanding and management of M. phaseolina in the face of present and future climate extremes.     

Analysis of the coat protein gene of Indian <Emphasis Type="Italic">Potato virus X</Emphasis> isolates for identification of strain groups and determination of the complete genome sequence of two isolates

Complete coat protein (CP) gene sequences of 66 Potato virus X (PVX) isolates were sequenced and compared with other PVX isolates. The CP gene of these isolates shared 93.9–100.0 % and 97.0–100.0 % identities among them at nucleotide and amino acid sequence level, respectively. Phylogenetic analysis with isolates of known PVX strain groups showed that all 66 isolates were found in clade I (strain groups 1, 3 and 4) and none of them in Clade II (strain groups 2 and 4). The Indian isolates had the 714 bp coat protein gene and were closer to clade I isolates with 92.9–99.5 % identities and distantly related to Clade II isolates (74.2 to 80.0 % identities). Hence, these isolates may belong to either of the strain groups 1, 3 and 4. A threonine residue at position 122 and glutamine residue at position 78 were found conserved in all the Indian isolates suggesting that these isolates cannot overcome Rx1gene and Nx gene mediated resistance, characteristic of group 1 and 3. However, unique amino acid substitutions were observed in Indian isolates and further studies are required to ascertain their role in symptom expression, virulence and host range. In addition, whole genome sequences of two isolates one each from Jalandhar (Punjab) and Kufri (Himachal Pradesh) were also determined. They were 6435 nts long with five ORFs and shared 81.4–97.2 % identities to clade I isolates from USA, Russia, India, Iran, China, Japan, Taiwan and 77.0 to 77.5 % identities with clade II isolates from Peru.     

Johne's disease in Canada part II: disease impacts, risk factors, and control programs for dairy producers

Part I of this 2-part review examined the clinical stages, pathophysiology, diagnosis, and epidemiology of Johne's disease, providing information relevant to Canada, where available. In Part II, a critical review of the economic impacts of the disease, risk factors, and important control measures are presented to enable Canadian bovine practitioners to successfully implement control strategies and participate in control programs. In cattle positive by enzyme-linked immunosorbant assay, there is a 2.4 times increase in the risk of their being culled, and their lactational 305-day milk production is decreased by at least 370 kg. Reduced slaughter value and premature culling account for losses of CDN dollars 1330 per year per infected 50-cow herd. Research has failed to show a consistent association between Mycobacterium avium subsp. paratuberculosis test status and reduced fertility or risk of clinical or subclinical mastitis. Host level factors include age and level of exposure, along with source of exposure, such as manure, colostrum, or milk. Agent factors involve the dose of infectious agent and strains of bacteria. Environmental management factors influence the persistence of the bacteria and the level of contamination in the environment. Emphasizing a risk factor approach, various control strategies are reviewed, including a number of national control programs currently in place throughout the world, specifically Australia, The Netherlands, and the United States. By reviewing the scientific literature about Johne's disease, control of the disease could be pursued through informed implementation of rational biosecurity efforts and the strategic use of testing and culling.     

Johne's disease in Canada Part I: clinical symptoms, pathophysiology, diagnosis, and prevalence in dairy herds

Recent international developments in the area of infectious disease control and nontariff trade barriers, along with possible zoonotic concerns, have provoked a revival of interest in Johne's disease in Canada and elsewhere. The bacterium causing Johne's disease, Mycobacterium avium subspecies paratuberculosis, is distributed worldwide and causes chronic granulomatous enteritis, also known as paratuberculosis, in domestic and exotic ruminants, including cattle. The subclinical form of this disease results in progressive weight loss, reduced milk production, lower slaughter value, and premature culling, with possible impacts on fertility and udder health. Eventually, infection can lead to the clinical form that manifests as chronic diarrhea, emaciation, debilitation, and eventual death. Currently, available tests to detect infected animals produce many false-negative results and some false-positives, particularly in subclinically infected animals, thus making their interpretation and utilization challenging in control programs. The objective of this 2-part review is to critically review the literature about Johne's disease in dairy cattle for bovine practitioners in Canada. Part I covers the clinical stages, pathophysiology, diagnosis, and prevalence of infection in Canada, while Part II discusses impacts, risk factors, and control programs relevant to Canadian dairy farms. By reviewing the scientific literature about Johne's disease, control of the disease could be pursued through informed implementation of rational biosecurity efforts and the strategic use of testing and culling.     

Effects on rice plant morphology and physiology of water and associated management practices of the system of rice intensification and their implications for crop performance

Field experiments were conducted in Bhubaneswar, Orissa, India, during the dry season (January–May) in 2008 and 2009 to investigate whether practices of the System of Rice Intensification (SRI), including alternate wetting and drying (AWD) during the vegetative stage of plant growth, could improve rice plants’ morphology and physiology and what would be their impact on resulting crop performance, compared with currently recommended scientific management practices (SMP), including continuous flooding (CF) of paddies. With SRI practices, grain yield was increased by 48% in these trials at the same time, there was an average water saving of 22% compared with inundated SMP rice. Water productivity with AWD-SRI management practices was almost doubled (0.68 g l⁻¹) compared to CF-SMP (0.36 g l⁻¹). Significant improvements were observed in the morphology of SRI plants in terms of root growth, plant/culm height, tiller number per hill, tiller perimeter, leaf size and number, leaf area index (LAI), specific leaf weight (SLW), and open canopy structure. These phenotypic improvements of the AWD-SRI crop were accompanied by physiological changes: greater xylem exudation rate, crop growth rate, mean leaf elongation rate (LER), and higher light interception by the canopy compared to rice plants grown under CF-SMP. SRI plants showed delayed leaf senescence and greater light utilization, and they maintained higher photosynthetic rates during reproductive and grain-filling stages. This was responsible for improvement in yield-contributing characteristics and higher grain yield than from flooded rice with SMP. We conclude that SRI practices with AWD improve rice plants’ morphology, and this benefits physiological processes that result in higher grain yield and water productivity.     

Evaluation of quality of beef produced and sold in parts of Tigray Region of Ethiopia

Microbiological and physical quality of 83 samples of beef produced and marketed in some parts of Tigray region of Ethiopia were evaluated. The color, marbling, pH, bleeding status and aerobic plate count (APC) were within permissible limits in 35(42.16%), 47(56.63%), 51 (61.44%), 13(15.66%) and 20(24.09%) samples, respectively. Based on these parameters, a high percentage of samples (varying from 38.56%–84.34%) were of unsatisfactory quality. Such a widespread imperfect bleeding (84.34%) and high APC (75.91%) emphasize the need to improve the techniques of bleeding and hygienic conditions at the time of production of meat at abattoir and its marketing.     

Energy balance and crop water stress in winter maize under phenology-based irrigation scheduling

In eastern India, cultivation of winter maize is getting popular after rainy season rice and farmers practice irrigation scheduling of this crop based on critical phenological stages. In this study, crop water stress index of winter maize at different critical stages wase determined to investigate if phenology-based irrigation scheduling could be optimized further. The components of the energy budget of the crop stand were computed. The stressed and non-stressed base lines were also developed (between canopy temperature and vapor pressure deficit) and with the help of base line equation, [(T _c − T _a) = −1.102 VPD − 3.772], crop water stress index (CWSI) was determined from the canopy-air temperature data collected frequently throughout the growing season. The values of CWSI (varied between 0.42 and 0.67) were noted just before the irrigations were applied at critical phenological stages. The soil moisture depletion was also measured throughout the crop growing period and plotted with CWSI at different stages. Study revealed that at one stage (silking), CWSI was much lower (0.42–0.48) than that of recommended CWSI (0.60) for irrigation scheduling. Therefore, more research is required to further optimize the phenology-based irrigation scheduling of winter maize in the region. This method is being used now by local producers. The intercepted photosynthetically active radiation and normalized difference vegetation index over the canopy of the crop were also measured and were found to correlate better with leaf area index.     

Seroprevalences of antibodies against bovine leukemia virus, bovine viral diarrhea virus, Mycobacterium avium subspecies paratuberculosis, and Neospora caninum in beef and dairy cattle in Manitoba

Of 1204 dairy cows and 1425 beef cows sampled, 60.8% and 10.3% were seropositive for Bovine leukemia virus, 4.5% and 1.7% were seropositive for Mycobacterium avium subspecies paratuberculosis, and 8.3% and 9.1% were seropositive for Neospora caninum, respectively, while 28.1% of dairy herds had unvaccinated animals with titres > or = 1:64 for Bovine viral diarrhea virus.