Of rodents and ruminants: a comparison of small noncoding RNA requirements in mouse and bovine reproduction

Ruminants are major producers of meat and milk, thus managing their reproductive potential is a key element in cost-effective, safe, and efficient food production. Of particular concern, defects in male germ cells and female germ cells may lead to significantly reduced live births relative to fertilization. However, the underlying molecular drivers of these defects are unclear. Small noncoding RNAs, such as piRNAs and miRNAs, are known to be important regulators of germ-cell physiology in mouse (the best-studied mammalian model organism) and emerging evidence suggests that this is also the case in a range of ruminant species, in particular bovine. Similarities exist between mouse and bovids, especially in the case of meiotic and postmeiotic male germ cells. However, fundamental differences in small RNA abundance and metabolism between these species have been observed in the female germ cell, differences that likely have profound impacts on their physiology. Further, parentally derived small noncoding RNAs are known to influence early embryos and significant species-specific differences in germ-cell born small noncoding RNAs have been observed. These findings demonstrate the mouse to be an imperfect model for understanding germ-cell small noncoding RNA biology in ruminants and highlight the need to increase research efforts in this underappreciated aspect of animal reproduction.     

Artificial polyploidy in medicinal plants: Advancement in the last two decades and impending prospects

Medicinal plants are in huge demand since the consumption is widespread and ever-increasing globally. The conventional breeding programs are generally environmental dependent; prone to different biotic and abiotic stresses as well as the secondary metabolite content is too low to harvest. In this context, developing polyploid individuals artificially would be a remarkable approach to increase vigor and attain this objective. Polyploids often exhibit some morphological features that are different or greater in forms than their diploid progenies. Polyploidization can be induced by quite a few antimitotic agents. The most frequently used antimitotic chemicals are colchicine, trifluralin, and oryzalin. The whole method of induced chromosome doubling consists of a series of steps, including an induction phase, regrowth phase, and a confirmation technique to evaluate the rate of achievement. The induction phase depends on different factors, such as explant types, antimitotic agents, its different concentrations, and exposure durations. To evaluate the accomplishment of polyploidization, morphological or anatomical observations are recorded as a rapid method. However, chromosome count and flow cytometry are the most eminent method for absolute confirmation. Despite significant prospects of polyploidization, there has been very little research on medicinal plants. The current review gives an overview of the different parameters of in vitro chromosome doubling, the history of the technique, and progress made over the last two decades.     

Simulating differences in net returns from beef production under alternative forage systems and management practices

A biological simulation model and a linear programming model were interfaced to determine production efficiencies and the optimal carrying capacity of a cow-calf producer in East Texas and to compare net returns to the model farm, given alternative tame forage systems and management practices. Experimental data both on forage systems and on livestock were used to verify and validate the simulated herds. The results showed that (1) of the three tame forage systems analyzed, warm-season perennial forages provided a relatively higher carrying capacity/ha, whereas a mix of both warm- and cool-season forages that allows year-round grazing gave relatively higher net returns/ha to management; (2) nutritional stress during winter months decreased animal performance proportionately more than it decreased feed costs; and (3) although spring-calving herds included more animals than corresponding fall-calving herds on the same land area, fall-calving herds produced more liveweight sales and generally higher net returns.     

Chemical analysis of essential oils of Eupatorium adenophorum and their antimicrobial,antioxidant and phytotoxic properties

Essential oils from inflorescences and roots of Eupatorium adenophorum Spreng (Asteraceae) have been investigated for their antimicrobial, phytotoxic and antioxidant activities. Based on GC–MS, the oil from inflorescences is dominated by sesquiterpenes (55.9 %) with γ-cadinene (18.4 %), γ-muurolene (11.7 %), 3-acetoxyamorpha-4,7(11)-diene-8-one (7.4 %) and bornyl acetate (6.3 %) as the major constituents. The oil obtained from the roots contained both sesquiterpenes (34.3 %) and monoterpenes (32.5 %) in almost equal proportions with E,E-cosmene (19.9 %), γ-muurolene (10.1 %), isothymol (7.5 %), β-cadinene (7.0 %) and α-phellandren-8-ol (5.9 %) as the major constituents. Both oils exhibited significant antifungal activity against five phytopathogenic fungi. The inflorescence oil showed higher antibacterial activity against Klebsiella pneumoniae, while the root oil was more effective against Staphylococcus aureus. The oils strongly inhibited or delayed germination and seedling growth of the weed Phalaris minor in a dose-dependent manner. As evidenced by a DPPH assay, the essential oils also exhibited significant free radical scavenging activity.     

Pattern of physicochemical changes in the water during hatching of Indian carp eggs in a Chinese hatchery system

Physicochemical changes in the water were monitored at different hours of embryonic and larval development of Indian carp (Cirrhinus mrigala) eggs in a Chinese hatchery system with 75–85% hatching success. At a water temperature of 29.3°C, mass hatching of the embryos started at about 11–12 h after fertilization and was completed within 4 h. The amount of dissolved oxygen and chemical oxygen demand ranged between 4.8 and 9.63 mg l^?1 and 16.5 and 185.0 mg l^?1, respectively. A marked rise in the concentration of bicarbonate and total hardness of the water after egg transfer into hatching tanks was perhaps due to liberation of Ca²⁺ and Mg²⁺ from the egg mass. A sharp decline in phosphate content during hatching was associated with the building of bones, while the ammonia level was greatly increased due to a high rate of nitrogenous excretion during hatching.     

Growth and reproduction of the vermicomposting earthwormPerionyx excavatus as influenced by food materials

An outdoor study was undertaken using polyethylene containers to assess the suitability of different organic residues, soybean straw (Glycine max L. Merril.), wheat straw (Triticum aestivum L.), maize stover (Zea mays L.), chickpea straw (citer arietinum L.) and city garbage, as food for the tropical epigeic earthwormPerionyx excavatus, and to assess the influence of this earthworm on the decomposition of these materials. Maize stover was found to be the most suitable of the food materials used. Population growth ofP. excavatus was enhanced by addition of these organic materials in the temperature range 24°-30°C, while the population was adversely affected above 30°C in a vermiculture system. Addition of earthworms accelerated the breakdown of residues, which ultimately resulted in a lowering of the C:N ratio, water-soluble carbon and carbohydrates, and increased ash percentage and cation exchange capacity compared with their respective controls.     

Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy

Adenosine monophosphate-activated protein kinase (AMPK) is a conserved sensor of intracellular energy activated in response to low nutrient availability and environmental stress. In a screen for conserved substrates of AMPK, we identified ULK1 and ULK2, mammalian orthologs of the yeast protein kinase Atg1, which is required for autophagy. Genetic analysis of AMPK or ULK1 in mammalian liver and Caenorhabditis elegans revealed a requirement for these kinases in autophagy. In mammals, loss of AMPK or ULK1 resulted in aberrant accumulation of the autophagy adaptor p62 and defective mitophagy. Reconstitution of ULK1-deficient cells with a mutant ULK1 that cannot be phosphorylated by AMPK revealed that such phosphorylation is required for mitochondrial homeostasis and cell survival during starvation. These findings uncover a conserved biochemical mechanism coupling nutrient status with autophagy and cell survival.     

Carbon sequestration and relationship between carbon addition and storage under rainfed soybean–wheat rotation in a sandy loam soil of the Indian Himalayas

Soil organic matter (SOM) contributes to the productivity and physical properties of soils. Although crop productivity is sustained mainly through the application of organic manure in the Indian Himalayas, no information is available on the effects of long-term manure addition along with mineral fertilizers on C sequestration and the contribution of total C input towards soil organic C (SOC) storage. We analyzed results of a long-term experiment, initiated in 1973 on a sandy loam soil under rainfed conditions to determine the influence of different combinations of NPK fertilizer and fertilizer + farmyard manure (FYM) at 10 Mg ha⁻¹ on SOC content and its changes in the 0–45 cm soil depth. Concentration of SOC increased 40 and 70% in the NPK + FYM-treated plots as compared to NPK (43.1 Mg C ha⁻¹) and unfertilized control plots (35.5 Mg C ha⁻¹), respectively. Average annual contribution of C input from soybean (Glycine max (L.) Merr.) was 29% and that from wheat (Triticum aestivum L. Emend. Flori and Paol) was 24% of the harvestable above-ground biomass yield. Annual gross C input and annual rate of total SOC enrichment were 4852 and 900 kg C ha⁻¹, respectively, for the plots under NPK + FYM. It was estimated that 19% of the gross C input contributed towards the increase in SOC content. C loss from native SOM during 30 years averaged 61 kg C ha⁻¹ yr⁻¹. The estimated quantity of biomass C required to maintain equilibrium SOM content was 321 kg ha⁻¹ yr⁻¹. The total annual C input by the soybean–wheat rotation in the plots under unfertilized control was 890 kg ha⁻¹ yr⁻¹. Thus, increase in SOC concentration under long-term (30 years) rainfed soybean–wheat cropping was due to the fact that annual C input by the system was higher than the required amount to maintaining equilibrium SOM content.