排序方式: 共有34条查询结果,搜索用时 15 毫秒
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为探究双孢菇菌渣发酵过程中微生物菌群组成变化和功能多样性,对双孢菇菌渣加猪粪混合堆肥的0、8 、16和20 d样品进行宏基因组测序,分析菌渣堆肥过程中微生物群落组成的变化并挖掘其功能基因。结果表明:(1)双孢菇菌渣有机肥发酵初期0 d时与发酵8 、16 和20 d时的微生物群落组成变化较大,同时在KEGG数据库中进行功能多样性分析和聚类分析发现0 d、8 d样本距离相对较近,16 d和20 d样本距离相对较近。(2)从不同时间段的菌渣有机肥中一共鉴定出28 257个种,其中发酵0 、8 、16 和20 d样本物种分别占物种总数的61.04%、85.35%、86.08%和85.40%。(3)自然发酵0 d时优势菌门为厚壁菌门,随着发酵时间的增加优势菌门逐渐变为变形菌门、拟杆菌门和放线菌门等;芽孢杆菌科及类芽孢杆菌科在发酵过程中一直为关键菌科;优势菌种为热噬淀粉芽胞杆菌和嗜热芽孢杆菌。(4)菌渣发酵过程中功能基因主要位于碳水化合物代谢、氨基酸代谢、核苷酸代谢和辅因子和维生素的代谢途径;碳水化合物酶占比较多的为糖基转移酶和糖苷水解酶,最低为多糖裂解酶,分别占比为38.8%、38.1%和1.2%;丰度最高的3个抗性基因分别为多耐药性抗性基因、大环内酯抗性基因和四环素抗性基因。 相似文献
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Xia Yan Xi-Xiang Tang Lin Chen Zhi-Wei Yi Mei-Juan Fang Zhen Wu Ying-Kun Qiu 《Marine drugs》2014,12(4):2156-2163
Two new indole alkaloids, metagenetriindole A (1) and metagenebiindole A (2), were identified from deep-sea sediment metagenomic clone derived Escherichia coli fermentation broth. The structures of new compounds were elucidated by spectroscopic methods. The two new indole alkaloids demonstrated moderately cytotoxic activity against CNE2, Bel7402 and HT1080 cancer cell lines in vitro. 相似文献
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土壤环境中蕴藏着巨大的微生物资源,而99%的土壤微生物不能用传统的纯培养。本研究基于西藏米拉山高寒草甸土壤微生物宏基因组Fosmid文库,采用PCR方法从文库中筛选PKS基因,以南方根结线虫(Meloido-gyne incognita)为靶标测定其杀线活性,并验证温室盆栽防效。从Fosmid文库中筛选得到2个含PKS基因的克隆K99和K82。K99属于Ⅰ型PKS,K82属于杂合PKS/NRPS;K99发酵液、热处理发酵液浸泡南方根结线虫J2 12 h后,杀线活性为100%。温室盆栽防效结果表明,K99的发酵菌液对南方根结线虫的防效为89%。K99能产生一种外分泌有杀线活性的物质,其热稳定性好,具有重要的开发利用价值。 相似文献
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以中国第34次南极科考采集的中山站附近海域5个站点海水样品为研究对象,通过Illumina高通量测序,鉴定微生物组成和微生物群落结构,发现中山站取样的海水中变形菌门(Proteobacteria)和拟杆菌门(Bacteroidetes)最为丰富,其次为蓝细菌(Cyanobacteria),属水平上黄杆菌属(Flavobacterium)和嗜冷杆菌属(Psychrobacter)含量最多,均超过20%。首次在南极海水中发现UBA1315属微生物,功能注释分析显示含有丰富的DNA修复基因,可能有助于适应南极恶劣环境。对中山站和罗斯海上层海水以及南北极不同地理位置海水微生物比较发现,变形菌门、拟杆菌门和蓝细菌在所有海水中普遍存在,变形菌门为优势菌,蓝细菌在南极海水中含量丰富,罗斯海上层海水比中山站海水微生物多样性丰富,且主要菌群丰度不同。初步揭示了中山站附近海域微生物群落组成,为后续进一步研究南极中山站海水微生物资源调查和功能开发研究提供一定的基础数据。 相似文献
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通过功能筛选方法,从安徽白山羊瘤胃微生物宏基因组文库中筛选得到了6个纤维素酶的阳性克隆。对其中的1个阳性克隆进一步进行亚克隆和序列分析,获得一个新型纤维素酶基因开放阅读框,通过BLAST对基因全序列进行分析比较,发现其与来自Bacteroides cellulosilyticus DSM 14838的hypothetical protein具有51%的序列相似性和65%的同源性。并以p ET28a(+)为载体、Escherichia coli BL21(DE3)为宿主菌,对新型酶基因进行高效重组表达,并对该酶表达条件进行优化。 相似文献
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Kelsey T. Young Kevin K. Lahmers Holly S. Sellers David E. Stallknecht Rebecca L. Poulson Jerry T. Saliki Stephen Mark Tompkins Ian Padykula Chris Siepker Elizabeth W. Howerth Michelle Todd James B. Stanton 《Journal of veterinary diagnostic investigation》2021,33(2):202
RNA viruses rapidly mutate, which can result in increased virulence, increased escape from vaccine protection, and false-negative detection results. Targeted detection methods have a limited ability to detect unknown viruses and often provide insufficient data to detect coinfections or identify antigenic variants. Random, deep sequencing is a method that can more fully detect and characterize RNA viruses and is often coupled with molecular techniques or culture methods for viral enrichment. We tested viral culture coupled with third-generation sequencing for the ability to detect and characterize RNA viruses. Cultures of bovine viral diarrhea virus, canine distemper virus (CDV), epizootic hemorrhagic disease virus, infectious bronchitis virus, 2 influenza A viruses, and porcine respiratory and reproductive syndrome virus were sequenced on the MinION platform using a random, reverse primer in a strand-switching reaction, coupled with PCR-based barcoding. Reads were taxonomically classified and used for reference-based sequence building using a stock personal computer. This method accurately detected and identified complete coding sequence genomes with a minimum of 20× coverage depth for all 7 viruses, including a sample containing 2 viruses. Each lineage-typing region had at least 26× coverage depth for all viruses. Furthermore, analyzing the CDV sample through a pipeline devoid of CDV reference sequences modeled the ability of this protocol to detect unknown viruses. Our results show the ability of this technique to detect and characterize dsRNA, negative- and positive-sense ssRNA, and nonsegmented and segmented RNA viruses. 相似文献
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基于宏基因组学的转基因棉田土壤微生物功能多样性分析 总被引:1,自引:0,他引:1
[目的]研究转基因棉田土壤微生物的功能多样性。[方法]采用直接法提取转基因棉根际土壤微生物总DNA,用限制性内切酶BamHI进行部分酶切,回收2.0~4.0 kb大小的片段插入到pUC19/BamHI脱磷载体上,转化到DH5α高效感受态细胞,构建宏基因组文库。随机挑取10个克隆序列测序,并通过NCBI预测可能存在的开放式阅读框和进行序列比对分析。[结果]该文库的外源插入片段平均长度为2.4 kb,90%以上克隆都含有插入片段,10个序列中存在着多种功能的开放式阅读框,包括一些水解酶、脱氢酶、脂解酶、修饰酶、抗生素及与电子传递链相关的酶类。[结论]该研究可为研究转基因棉大面积野外种植以后的生态安全性提供参考。 相似文献
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《农业科学学报》2023,22(6):1857-1869
Antimicrobial resistance has become a global problem that poses great threats to human health. Antimicrobials are widely used in broiler chicken production and consequently affect their gut microbiota and resistome. To better understand how continuous antimicrobial use in farm animals alters their microbial ecology, we used a metagenomic approach to investigate the effects of pulsed antimicrobial administration on the bacterial community, antibiotic resistance genes (ARGs) and ARG bacterial hosts in the feces of broiler chickens. Chickens received three 5-day courses of individual or combined antimicrobials, including amoxicillin, chlortetracycline and florfenicol. The florfenicol administration significantly increased the abundance of mcr-1 gene accompanied by floR gene, while amoxicillin significantly increased the abundance of genes encoding the AcrAB-tolC multidrug efflux pump (marA, soxS, sdiA, rob, evgS and phoP). These three antimicrobials all led to an increase in Proteobacteria. The increase in ARG host, Escherichia, was mainly attributed to the β-lactam, chloramphenicol and tetracycline resistance genes harbored by Escherichia under the pulsed antimicrobial treatments. These results indicated that pulsed antimicrobial administration with amoxicillin, chlortetracycline, florfenicol or their combinations significantly increased the abundance of Proteobacteria and enhanced the abundance of particular ARGs. The ARG types were occupied by the multidrug resistance genes and had significant correlations with the total ARGs in the antimicrobial-treated groups. The results of this study provide comprehensive insight into pulsed antimicrobial-mediated alteration of chicken fecal microbiota and resistome. 相似文献
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