Genome-wide association study for spot blotch resistance in Afghan wheat germplasm

Spot blotch (SB), caused by Bipolaris sorokiniana, is a devastating disease of wheat globally, especially in South Asia and South America. Understanding the genetics of resistance to SB is important for developing breeding strategies to improve resistance. A panel of 301 genotypes from Afghanistan was phenotyped over two crop seasons using a mixture of virulent B. sorokiniana isolates and genotyped using DArTSeq to obtain genome-wide markers. Fifty genotypes (16.6%) showed disease scores less than the resistant control. Principal component analysis using the genotypic data clustered the genotypes into five different groups. Among models used for genome-wide association mapping, the multilocus mixed model, and fixed and random model circulating probability unification algorithms were most effective in identifying significant marker-trait associations (MTA). Twenty-five MTAs at p ≤ .001 were identified on chromosomes 1A, 1B, 1D, 2B, 2D, 3A, 3B, 4A, 5A, 5B, 6A, 7A, and 7D, indicating the quantitative nature of resistance to SB. Phenotypic variation explained by these markers ranged from 2.0% to 17.7%, and genomic regions on the chromosomes 1D, 2D, 3A, 3B, 4A, 5A, and 5B coincided with loci identified in previous studies. Three single nucleotide polymorphism (SNP) markers on chromosomes 1B (SNP 1113207) and 5A (SNPs 5411867 and 998276) were significant in both crop seasons as well as in the combined analysis across seasons. Marker 5411867 is close to Vrn-A1, shown to be associated with SB in previous studies. Furthermore, among known SB resistance genes, Sb2 on chromosome 5B was predicted to be significant in this panel.     

Phenotypic variation within a Hungarian landrace of runner bean (Phaseolus coccineus L.)

Summary A landrace seed lot of runner bean (Phaseolus coccineus L.), obtained from the Budapest region, Hungary, was separated into five seed groups according to seed coat colour. 131 plants were grown randomly, and observed for 27 morphological and physiological characters. The collected data were analysed by ANOVA.Numerical taxonomy of the data employed Principal Components Analysis to generate scatter diagrams and Cluster Analysis to generate dendrograms, both before and after removing data on the four anthocyanin colour characters (seed coat, calyx, stem and flower colour) as these characters are probably controlled by a single major gene. The progenies from the five distinct parental seed groups showed much overlap in characteristics, indicating that they were not distinct lines but comprised a largely panmictic population.Some character associations were detected: plants from white seeds matured significantly later than those from black seeds, plants from white seeds with a few dark spots produced seeds significantly heavier than average, whereas those from white or black seeds produced significantly lighter seeds, although the average seed yield per plant did not differ significatly.     

Traditional maintenance breeding of landraces: 2. Practical and theoretical considerations on maintenance of variation of landraces by farmers and gardeners

Maintenance breeding of landraces is discussed. Various practical andtheoretical advices, presented in the literature to collectors of genebankshave been used to compare these with the methods applied by farmers.Although most farmers realize the utmost importance of yield stability, theyand their ancestors experienced that maintenance breeding could better bereplaced by seed replacement. A few crops such as rootstock rose andespecially maize, form exceptions. In these crops the farmers actually collect`hips', or ears for the next generation. However, they also apply seedreplacement from time to time.More research is needed to obtain better knowledge about the level ofvariation of a landrace grown for various generations before and after seedreplacement.     

Crossability percentages of bread wheat landraces from Sichuan Province,China with rye

Summary The crossabilities of 177 landraces of wheat (Triticum aestivum L.) from Sichuan Basin and its adjacent mountain ranges with rye (Secale cereale L.) have been tested. 16 landraces possess a higher crossability than Chinese Spring, 34 landraces have a similar and 127 landraces have a lower crossability than Chinese Spring or are non-crossable with rye. Most landraces with high crossability occur in Qinling Mountain and Dabashan Mountain Ranges in north of Sichuan and the valleys of Minjiang River, Fujiang River and Jialinjiang River in Sichuan Basin.     

Evaluation of landrace topcross hybrids of pearl millet for arid zone environments

Pearl millet (Pennisetum glaucum (L.) R. Br.) cultivars for marginal, arid environments need to combine the adaptation to stress conditions of indigenous landraces with an improved yield potential and disease resistance, to allow them to both perform well in farmers fields and to meet the requirements for cultivar release. This paper evaluates landrace-based topcross hybrids (adapted landraces crossed on high-yielding male-sterile lines), as a quick and efficient way of achieving this objective. Topcross hybrids showed a consistent increase in biomass production across all test environments, including the harsh arid zone environments. Depending upon the plant type of the male-sterile used to make the hybrid, this was expressed as increased grain yield only, or increased grain and fodder yields. The downy mildew (Sclerospora graminicola) reaction of the topcross hybrids was determined by the reaction of the male-sterile line used, with the resistant male-sterile producing resistant topcross hybrids and vice-versa. Topcrossing adapted landraces on high-yielding male-sterile lines thus provides an opportunity to improve disease resistance and grain and/or fodder yields, with no apparent loss of adaptation to the marginal environments in which the landraces have evolved.ICRISAT Journal Article no. 1575     

Genetic organization of aromatic rice as revealed by RAPD markers: A case study in conserving crop genetic resources on farm

Summary On-farm conservation of landraces is one strategy to maintain the diversity of crop germplasm in local agro-ecosystems. The genetic structures of landraces are a key biological factor in on-farm conservation strategies. To accumulate a genetic understanding that will help establish a methodology for on-farm conservation, the genetic organization of landraces of aromatic rice in Namdinh province, Vietnam was analyzed using RAPD markers. Eighteen RAPD markers detected 38 genotypes among 320 aromatic rice samples growing at 23 sites of farmers' fields and in the experimental field that derived from 13 sites. Geographical variation was observed in the frequency of genotypes, whereas individual landraces could not be distinguished by RAPD markers. Genetic variation within a site was generally smaller than that among sites. The degree of genetic similarity of the plants in a site varied among sites, as did the number of genotypes. Changes in genetic structure over time were investigated using experimental populations each derived from approximately 30 plants from 13 farmers' fields. The differences detected by DNA markers between the genetic structural in the farmers' fields and those in experimental fields suggested that genetic drift is a major cause of these differences. The present study suggests that DNA markers are an essential means to monitor the genetic structures of heterogeneous landraces of rice, and are useful for selecting study sites for the on-farm conservation of genetic diversity as well as for successive monitoring.     

Relationship between grain yield and quality of durum wheats from different eras of breeding

High protein content and a strong gluten are required in durum wheat (Triticum turgidum L. var. durum) to process semolina into a suitable final pasta product. The variation in grain protein content and quality realized through breeding and the concomitant variation in biomass production and partitioning have been analyzed by comparing in a 2-year field trial, four groups of cultivars released in different eras and areas of breeding. Three groups of cultivars represented the evolution of the Italian germplasm from the first landraces and genealogical selections (Group 1) to the cultivars constituted by crossing Mediterranean types with Syriacum types (Group 2), and the modern dwarf and semi-dwarf cultivars (Group 3). Group 4 was an ICARDA collection of breeding lines bred for adaptation to high altitudes. The measured traits included both biomass production and its partitioning to the grain, and total nitrogen uptake and its partitioning to the grain. Grain protein percentage, gluten content and gluten index were utilized as quality traits. Breeding resulted in an increased earliness, reduced height without significant decreases in total biomass, and improved partitioning. The concomitant total nitrogen uptake did not change, whereas the changed biomass partitioning caused a parallel change in nitrogen partitioning, with an increase in nitrogen harvest index from 0.41 to 0.59. The lower protein percentage in the grains of modern cultivars was therefore not due to a reduced nitrogen uptake, nor to a lower NHI or to less milligram of nitrogen per grain, but to the dilution effect caused by the heavier grains of modern cultivars. A notable increase in gluten index was observed in the modern cultivars, reflecting an improvement in the pasta-making quality of grain proteins.     

Natural and human selection for purple-grain tetraploid wheats in the Ethiopian highlands

Summary Purple-grain tetraploid wheats (Triticum turgidum L.) are widely cultivated in the Ethiopian highlands despite the claim that they have lower industrial quality properties and market prices than the white or red/brown seed-colour types. In an attempt to find a possible explanation for this, the three seed-colour groups were compared for grain yield, other 11 agronomic traits and protein content. Five traits displayed significant differences between seed colour groups where the purple-seed was superior; earlier maturity, shorter height, and higher fertility, tillering capacity and harvest index. Most of these are important adaptive traits to waterlogging stress on dark-clay soils (pellic vertisols) where the great bulk of the Ethiopian tetraploid wheats have been grown. Furthermore, among the three seed-colour groups, purple-seed wheat has the best malting quality for the preparation of arekie, a locally distilled spirituous liquor. It, therefore, appears that both natural and human selections have been reponsible for their continued cultivation. Hence, the notion that purple-seeded wheat is the “least preferred” should be interpreted carefully not to necessarily address the whole community in Ethiopia. As to their taxonomy, all tetraploid wheat taxa (T. turgidum L. sensu lato, 2n = 4x = 28) that are found in Ethiopia, with the possible exception of T. dicoccon Shrank (locally known as Adja), may possess the purple pericarp-colour, although in varying frequencies; very low inT. polonicum L., and high inT. carthlicum Nevski andT. durum Desf.     

Protein heterogeneity in European wheat landraces and obsolete cultivars

Identity and present degree of genetic homogeneity and heterogeneity, respectively of 52 European wheat accessions, maintained in the collection of wheat genetic resources, have been characterized using analyses of glutenins by sodiumdodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGE). Six of the analyzed wheat accessions were observed to be homogeneous, while 46 (88.5%) of them were heterogeneous in protein profiles. Heterogeneous accessions possessed 2 to 13 different protein lanes. Together, 17 high molecular weight glutenin subunit (HMW-GS) alleles have been found. The most frequent HMW-GS alleles at the Glu-A1, Glu-B1, and Glu-D1 complex loci were 1, 7+9, and 2+12, respectively. However, also low frequented HMW-GS alleles or allelic combinations, such as 7+15, 13+16, 20, 6, 7, and 9 were observed. Furthermore, another new allele encoding HMW glutenin subunit with relative molecular weight 98.6 kDa has been found in one of the lines of the cultivar Eritrospermum 917. The Glu-score in the examined accessions varied in broad range, some of the lines reached the maximum value 10.     

Results of activities to maintain landraces and other material in some European countries in situ before 1945 and what we may learn from them

All three recommendations to maintain landraces in European countries, given in 1927: 1. maintenance by traditional farmers, 2. maintenance by school personnel and pupils, and 3. maintenance by small agricultural institutions, were disregarded. The present outcome: maintenance by genebanks, which often grow landraces and improved cultivars of one crop next to each other, and which often are part of a large agricultural research institute, was advised against.The above observation may be of value to those who at present advocate maintenance of landraces by traditional farmers in developing countries.It is recommended that landraces should be collected and maintained in genebanks as this will result in a partial loss of the material, whereas on farm maintenance (in situ conservation) would lead to a complete loss.