白羊草叶片和根系干旱胁迫下microRNAs差异表达分析

为了探索干旱胁迫下白羊草miRNAs的组织特异性,本研究在干旱胁迫下白羊草(Bothriochloa ischaemum)转录组数据的基础上,采用Illumina测序技术和生物信息学方法,对干旱胁迫和正常生长条件下白羊草苗期叶片和根系miRNAs(microRNAs)进行鉴定和表达分析研究。结果从4个库中鉴定出白羊草中有属于20个家族的79个已知miRNAs和92个新miRNAs。干旱胁迫后叶片和根系中差异表达的miRNAs分别有65个(上调28和下调37)和27个(上调15和下调12)。响应干旱胁迫的主要miRNAs为miR156,miR164,miR166,miR169,miR172,miR396,miR398,miR408,miR528。对这些miRNAs预测的靶基因进行GO生物功能和KEGG代谢通路富集分析表明,植物激素信号转导是叶片和根系响应干旱胁迫共同富集的主要代谢通路,而黄酮类化合物生物合成则是干旱胁迫下叶片富集的最主要代谢通路。     

水稻miRNA应答低能N+束辐照的基因芯片分析

[目的]探讨水稻应答N＋束辐照机制中相关miRNA的表达差异。[方法]各选取3组N＋束辐照处理水稻种子和未处理的水稻种子,提取其在30℃发芽96 h幼苗总RNA,采用Agilent单通道水稻基因表达谱芯片筛选2组水稻幼苗差异表达基因。芯片中含有miRNA探针510个,分析其在样品间表达差异2倍左右作为域值范围。[结果]辐照组与对照组相比表达差异显著的miRNA分子有14个,且均为下调。[结论]水稻N＋束辐照组和对照组中存在差异表达的miRNA分子,可能调控某些基因的表达来应答离子辐照,从而表现出与对照不一样的生理生化和表型差异。     

Identification of key microRNAs affecting melanogenesis of breast muscle in Muchuan black-boned chickens by RNA sequencing

ABSTRACT

1. Melanin content is considered an important indicator of meat quality in black-boned chickens, which have a high market value. To understand the complex physiological processes underlying muscle melanogenesis in this chicken, differentially expressed miRNAs (DEMs) were detected between black muscle (BM) and white muscle (WM) of chickens using high-throughput sequencing technology. Six small RNA libraries were constructed, and more than 16.75 million clean reads were obtained for each library.

2. A total of 582 known miRNAs and 65 novel miRNAs were identified from the six chicken sequence libraries. A total of 19 DEMs were identified between the two groups, of which nine were upregulated and 10 were downregulated. Furthermore, the DEMs were predicted to target 572 genes.

3. Certain DEMs (such as miR-204, miR-133b, and miR-12 229-3p) and their target genes may play an important role in muscle melanogenesis of chickens. These findings provide a foundation for clarifying the miRNA regulatory mechanisms involved in muscle pigmentation in avian species.     

水稻miRNA应答低能N^＋束辐照的基因芯片分析

[目的]探讨水稻应答N^＋束辐照机制中相关miRNA的表达差异。[方法]各选取3组N^＋束辐照处理水稻种子和未处理的水稻种子,提取其在30℃发芽96h幼苗总RNA,采用Agilent单通道水稻基因表达谱芯片筛选2组水稻幼苗差异表达基因。芯片中含有miRNA探针510个,分析其在样品间表达差异2倍左右作为域值范围。[结果]辐照组与对照组相比表达差异显著的miRNA分子有14个,且均为下调。[结论]水稻N^＋束辐照组和对照组中存在差异表达的miRNA分子,可能调控某些基因的表达来应答离子辐照,从而表现出与对照不一样的生理生化和表型差异。