基于WT-CNN-LSTM的溶解氧含量预测模型

溶解氧（Dissolved oxygen, DO）含量是影响水产养殖产量的重要因素之一，具有时序性、不稳定性和非线性等特点，且其影响因子过多、存在复杂的耦合关系，难以实现精准预测。针对传统长短时记忆神经网络（Long short term memory, LSTM）预测模型易引入冗余数据，且在训练过长序列时会出现梯度消失现象，从而不能捕捉因子间长期的依赖性问题，提出了基于小波变换（Wavelet transform, WT）、卷积神经网络（Convolutional neural network, CNN）和LSTM的溶解氧含量预测模型。首先，使用WT降低数据噪声；然后，使用CNN深度挖掘各变量之间的潜在关系；最后，利用LSTM的时序性预测2h后的水产养殖溶解氧含量。结果表明，本文提出的WT-CNN-LSTM模型预测效果良好，其平均绝对误差、均方根误差和决定系数分别为0.138、0.229和0.954，比传统LSTM模型分别优化了28.87%、21.03%和4.61%。     

基于部首嵌入和注意力机制的病虫害命名实体识别

为了解决农业病虫害命名实体识别过程中存在的内在语义信息缺失、局部上下文特征易被忽略和捕获长距离依赖能力不足等问题，以农业病虫害文本为研究对象，提出一种基于部首嵌入和注意力机制的农业病虫害命名实体识别模型(Chinese agricultural diseases and pests named entity recognition with joint radical embedding and self attention, RS-ADP)。首先，该模型将部首嵌入集成到字符嵌入中作为输入，用以丰富语义信息。其中，针对部首嵌入设计了3种特征提取策略，即卷积神经网络(Convolutional neural network, CNN)、双向长短时记忆网络(Bidirectional long short term memory network, BiLSTM) 和CNN-BiLSTM；其次，采用多层不同窗口尺寸的CNNs层提取不同尺度的局部上下文信息；然后，在BiLSTM提取全局序列特征的基础上，采用自注意力机制进一步增强模型提取更长距离依赖的能力；最后，采用条件随机场(Conditional random field, CRF)联合识别实体边界和划分实体类别。在包含11个类别和24715条标注样本的农业病虫害自制语料上进行了实验。结果表明，本文模型RS-ADP在该数据集上精确率、召回率和F1值分别为94.16%、94.47%和94.32%；在具体实体类别上，RS-ADP在作物、病害、虫害等易识别实体上F1值高达95.81%、97.76%和97.23%。同时，RS-ADP在草害、病原等难以识别实体上F1值仍保持86%以上。实验结果表明，本文所提模型能够有效识别农业病虫害命名实体，其识别精度优于其他模型，且具有一定的泛化性。     

SCFAs对奶牛瘤胃上皮细胞Ca2+信号通路相关基因表达的影响

为探究短链脂肪酸(SCFAs)对奶牛瘤胃上皮细胞(BRECs)Ca~(2+)信号通路相关基因表达的影响,试验分为3个处理组,分别为野生型BRECs组,含20mmol/L SCFAs BRECs组,含20mmol/L SCFAs且通过CRISPR/Cas 9系统敲除GPR41基因的BRECs组,每个处理组3个重复,每组细胞均培养24h后,收集细胞提取总RNA,通过qRT-PCR对Ca~(2+)信号通路相关基因的mRNA表达量和细胞内Ca~(2+)浓度进行测定。结果表明,与野生型BRECs相比,添加20mmol/L SCFAs可极显著增加PLCB2的mRNA表达量(P0.01),显著增加IP3R1的mRNA表达量(P0.05),对PLCE1、PLCL1、PKCB和PKCG的mRNA表达量无显著差异(P0.05),可增加细胞内Ca~(2+)浓度但无显著差异(P0.05);敲除SCFAs的受体GPR41后,添加20 mmol/L SCFAs可显著降低IP3R1的mRNA表达量(P0.05),极显著上调PLCE1和PLCB2的mRNA表达量(P0.01),但对PLCL1、PKCB和PKCG的mRNA表达量无显著影响(P0.05),细胞内Ca~(2+)浓度有降低趋势但无显著差异(P0.05)。综上,SCFAs可以通过激活其受体GPR41来调控BRECs内Ca~(2+)信号通路中相关基因的表达和细胞内Ca~(2+)的释放。     

Fluctuating salinity effect on Sphoeroides annulatus (Jenyns 1842) physiological responses

Euryhaline fish, such as the Bullseye puffer Sphoeroides annulatus (Jenyns 1842), experience sudden salinity changes in their natural environment, which is more common than the exception, so they must adapt to survive and cope with extreme salt conditions. Therefore, Bullseye puffer juveniles were exposed to short‐term stress (39 hr) by fluctuating salinity conditions (41, 35, 29, 23, 17, 11, 5, 11, 17, 23, 29, 35, 41 psu) with a 3‐hr interval between each point at 26 ± 1ºC in a respirometer chamber and acclimation reservoirs. Responses to oxygen consumption rate (OCR: 23–35 mg O₂ h^–1 kg^–1), ammonium excretion rate (AER: 1–1.85 mg NH4⁺ h^?1 kg^?1), oxygen‐nitrogen atomic ratio (O:N 17–30), osmoregulatory pattern (blood osmotic pressure from 342.4 to 332.8 mmol/kg) and changes in expression levels of Na⁺/K⁺‐ATPase in the gills (higher values at higher salinities) were measured. Although some signs of stress were detected below the iso‐osmotic point (11.4 psu), the puffer fish is a strong euryhaline fish that survives under these conditions. Nonetheless, it could recover when salinity returned to the initial acclimation point because Sphoeroides annulatus is able to live in a wide range of environments with wide natural salinity fluctuations; thus, a common practice in aquaculture has been to expose fish to low salinity for several reasons discussed in this study. This capacity reveals its high plasticity to saline adaptation from 41 to 5 psu an up from 5 to 41 psu, all in less than 2 days.     

Forecast skill for predicting distribution shifts: A retrospective experiment for marine fishes in the Eastern Bering Sea

Forecasting distribution shifts under novel environmental conditions is a major task for ecologists and conservationists. Researchers forecast distribution shifts using several tools including: predicting from an empirical relationship between a summary of distribution (population centroid) and annual time series (“annual regression,” AR); or fitting a habitat‐envelope model to historical distribution and forecasting given predictions of future environmental conditions (“habitat envelope,” HE). However, surprisingly little research has estimated forecast skill by fitting to historical data, forecasting distribution shifts and comparing forecasts with subsequent observations of distribution shifts. I demonstrate the important role of retrospective skill testing by forecasting poleward movement over 1‐, 2‐ or 3‐year periods for 20 fish and crab species in the Eastern Bering Sea and comparing forecasts with observed shifts. I specifically introduce an alternative vector‐autoregressive spatio‐temporal (VAST) forecasting model, which can include species temperature responses, and compare skill for AR, HE and VAST forecasts. Results show that the HE forecast has 30%–43% greater variance than predicting that future distribution is identical to the estimated distribution in the final year (a “persistence” forecast). Meanwhile, the AR explains 2%–6% and VAST explains 8%–25% of variance in poleward movement, and both have better performance than a persistence forecast. HE and AR both generate forecast intervals that are too narrow, while VAST models with or without temperature have appropriate width for forecast intervals. Retrospective skill testing for more regions and taxa should be used as a test bed to guide future improvements in methods for forecasting distribution shifts.     

矮凤梨短营养生长期突变材料‘14-1’的性状鉴定

菠萝栽培种(Ananas comosus var. comosus)的营养生长期较长,制约了其新品种选育效率。收集和筛选营养生长期较短的种质,可为短营养生长期菠萝新品种的选育创制中间材料。从境外收集了23份易成花的野生种质材料,自2008年起进行栽培、繁殖和性状鉴定。通过对营养生长期的比较和观察,从矮凤梨(A. comosus var. nanus)的体胚苗中发现了1份营养生长期显著缩短的突变材料‘14-1’,其营养生长期约6个月(原品种约12个月),1年开花2次,具有极易成花等特点。‘14-1’无性繁殖后代遗传性状稳定,可作为短营养生长期菠萝育种的亲本资源。     

Terrestrial Arthropods in the Initial Restoration Stages of Anthracite Coal Mine Spoil Heaps in Northwestern Spain: Potential Usefulness of Higher Taxa as Restoration Indicators

An “edaphic‐landscape” restoration was performed in two anthracite coal mine spoil heaps located in NW Spain as a demonstration and pilot program for the restoration of coal mine spoils. Terrestrial arthropods were used to monitor the process as an alternative to the use of secondary succession of plants or physico‐chemical indicators of soils. This study analyzes the usefulness of the terrestrial arthropods at different taxonomic levels (orders of Arthropoda, families of Coleoptera, and species of Carabidae) as restoration indicators in the initial restoration stages. The terrestrial arthropods respond rapidly to restoration, and the results may be explained by short‐term increase in abiotic factors resulting from the applied techniques, mainly the animal origin of the organic matter added and the biodegradable coconut geotextile. Carabidae is of relatively low value as a short‐term restoration indicator at a specific level. Coleoptera provided the best information for interpreting the ecological results over the short term and had the best relationship with the cost of identification. Likewise, the results showed that the edaphic‐landscape restoration leads to an abnormal arthropod assemblage in the short term because of an excessive abundance of isopods and polydesmids. No clear convergence appeared toward any of the terrestrial arthropod communities present in the grassland, scrubland, or woodland semi‐natural areas, which were used as reference end point. The restoration indicator value produced by the higher taxonomic levels of the studied terrestrial arthropods may be useful and cost‐effective for assessing short‐term changes caused by environmental restorations performed to recover ecosystems affected by mining activities. Copyright © 2014 John Wiley & Sons, Ltd.     

吲哚丁酸和萘乙酸在茶树短穗扦插上的应用效果

用不同浓度的吲哚丁酸(IBA)和萘乙酸(NAA)组合处理茶树短穗,进行扦插,结果表明:IBA和NAA及其交叉组合对扦插成活率、发根率、发根条数的差异均未达到显著;IBA对最长根长的效果显著,且IBA40×10-6明显优于其他浓度处理。     

Tree growth and stand development of four Populus clones in large monoclonal plots

Four clones of Populus were planted in replicated monoclonal plots near Olympia, WA, to evaluate their suitability for use in short-rotation culture. All clones were easily established and had minimal problems from damaging agents during the first five years. Observed differences among clones in pattern and amount of growth appeared to be associated with differences in number and density of buds, sylleptic branching, and phenology. In addition, differences in drought tolerance and stockability may also have influenced clonal differences in annual growth and stand productivity. Individual tree growth was limited by the dense 1.0-m spacing, but the best-growing clones averaged 13 to 16 m tall, 7 to 9 cm in breast-high diameter (1.3 m), and produced stand basal areas exceeding 38 m²ha^-1at 8 years. Mortality was negligible for 7 years, after which various combined effects of competition, stem borer damage (Cryptorhyncus lapathi), and a severe windstorm caused mortality ranging from 18 to 36% in the three fastest growing clones.     

Inducing long-shoot growth for vegetative propagation of western larch

This study evaluated methods to release from suppression both short shoots on lower stems and developing buds on leaders of western larch (Larix occidentalis Nutt.) seedlings, in order to increase the number of long shoots suitable for stem-tip cuttings. Treatments included application of the cytokinin N-6-benzyladenine (BA), horizontal stem bending, and decapitation on container-grown 1.5-year-old seedling ortets. The rate of release of suppressed growth of short shoots on the basal stem segments increased from 15% to 83% after spraying with 200 ppm BA and doubled on unsprayed horizontally-bent stems. Syllepsis on the upper stems increased by 19% following decapitation and by 32% after a combination of decapitation and BA treatments. Although these treatments resulted in large increases in the numbers of long shoots available for stem cuttings, the rootability of BA-treated shoots needs assessing before use in operational programs.