Genetic bases of source-,sink-,and yield-related traits revealed by genome-wide association study in Xian rice

The source-sink relationship determines the ultimate grain yield.We investigated the genetic basis of the relationship between source and sink and yield potential in rice.In two environments,we identified quantitative trait loci(QTL)associated with sink capacity(total spikelet number per panicle and thousand-grain weight),source leaf(flag leaf length,flag leaf width and flag leaf area),source-sink relationship(total spikelet number to flag leaf area ratio)and yield-related traits(filled grain number per panicle,panicle number per plant,grain yield per plant,biomass per plant,and harvest index)by genome-wide association analysis using 272 Xian(indica)accessions.The panel showed substantial variation for all traits in the two environments and revealed complex phenotypic correlations.A total of 70 QTL influencing the 11 traits were identified using 469,377 high-quality SNP markers.Five QTL were detected consistently in four chromosomal regions in both environments.Five QTL clusters simultaneously affected source,sink,source–sink relationship,and grain yield traits,probably explaining the genetic basis of significant correlations of grain yield with source and sink traits.We selected 24 candidate genes in the four consistent QTL regions by identifying linkage disequilibrium(LD)blocks associated with significant SNPs and performing haplotype analysis.The genes included one cloned gene(NOG1)and three newly identified QTL(qHI6,qTGW7,and qFLA8).These results provide a theoretical basis for high-yield rice breeding by increasing and balancing source–sink relationships using marker-assisted selection.     

Weed community responses to soil type during transition to no-till practice on smallholder farms in Zimbabwe

Understanding drivers of weed density and diversity is essential for the development of weed management strategies. Here, we compared temporal changes in weed density and diversity under no-till (NT) and conventional (CONV) tillage systems in cotton–maize rotations on loam, clay loam and sandy loam soils immediately after transition to NT in Kadoma, Zimbabwe. The effect of tillage system on weed density varied through the growth season and was dependent upon soil type and species composition of the weed community. Although weed responses to tillage system varied amongst species, we identified general trend effects on weed density on specific soils. At 3 weeks after crop emergence (WACE), weed density on loam soils was 76% and 96% higher in NT than in CONV during the 2009/2010 and 2010/2011 seasons, respectively, and on clay loam soils it was 37% and 33% higher in NT than CONV, respectively. Weed densities in NT and CONV were similar across all soil types at 6 WACE during the 2009/2010 and 2010/2011 seasons and at 9 WACE in 2009/2010. Tillage system did not affect weed density during the growth season on sandy loam soils. Weed diversity (Shannon index) was at least 75% higher in NT than CONV on loam and clay loam soils at 3 WACE during both seasons. It is likely these increases in weed densities following conversion to NT will exacerbate already prevalent weed management problems in the smallholder sector. Earlier weeding is recommended to suppress weed emergence and reduce likely associated crop yield losses.     

Disturbance ecology benchmarks for Schima–Castanopsis forests in the central Himalayas

Roughly 2.8 billion people burn wood for basic energy needs, and traditional wood-fuel represents ~55% of global wood harvest. With increasing anthropogenic disturbance of natural forests, the “stability/fragility” paradigm of forest ecology is gradually being replaced by a “disturbance/recovery” paradigm. In order to understand effects of human-induced disturbances on natural forest ecosystems, and to plan for recovery of disturbed forests, appropriate metrics become necessary. Such metrics will aid in assessment and management of forests for carbon sequestration, biodiversity conservation, ecosystem health, and sustainability of natural resources. Such metrics are especially needed in “wood-fuel hotspots” of the world where over 275 million people live and harvest wood-fuel unsustainably. In this article, I provide metrics of human-induced disturbance in Nepal’s Schima–Castanopsis dominated forests and show relationships of disturbance intensity with forest structure and composition, site productivity potential, natural regeneration, and tree species diversity. Benchmark data were collected from survey of two protected reference forests and compared against three other forests representing a disturbance gradient. The Schima–Castanopsis association is a common dominant forest type in the warm temperate zone of the central Himalayas, and the findings from this study should have wider application.     

China's alfalfa market and imports: Development,trends, and potential impacts of the U.S.–China trade dispute and retaliations

This study examines the development and trends of China's alfalfa market and imports, identifies key factors for the rapid increase in China's alfalfa imports, and discusses potential impacts of the U.S.–China trade dispute and retaliations on the alfalfa markets and trade in both nations. China's rapid transition toward larger-scale commercial dairy production, with enhanced feed and cost management as well as quality and safety control, and its limited resources for high-quality alfalfa production are key factors for the dramatic increase in its alfalfa imports, from 19 601 metric tons in 2008 to 1.38 million metric tons (mmt) in 2018. While the United States dominated China's alfalfa imports with an average share of 97.01% from 2007 to 2017, the share dropped to 83.76% in 2018 and 63.28% in January 2019 due to the trade dispute and retaliations started in 2018. China will likely remain a large importer of alfalfa because of both its growing demand and the comparative advantages of imported alfalfa in quality and price, but the imports from the United States will be highly affected by the ongoing trade dispute and negotiations. China is also expected to make more efforts to reduce its dependence on U.S. alfalfa through increased investment in domestic alfalfa production and identification of alternative sources of alfalfa and other hay imports.     

Effects of forest residue harvesting on short-term changes in soil solution chemistry

Short-term (three to four years) effects of forest harvesting on soil solution chemistry were investigated at two Norway spruce sites in southern Norway, differing in precipitation amount and topography. Experimental plots were either harvested conventionally (stem-only harvesting, SOH) or whole trees, including crowns, twigs and branches were removed (whole-tree harvesting, WTH), leaving residue piles on the ground for some months before removal. The WTH treatment had two sub-treatments: WTH-pile where there had been piles and WTH-removal, from where residues had been removed to make piles. Increased soil solution concentrations of NO₃–N, total N, Ca, Mg and K at 30?cm depth, shown by peaks in concentrations in the years after harvesting, were found at the drier, less steep site in eastern Norway after SOH and WTH-pile, but less so after WTH-removal. At the wetter, steeper site in western Norway, peaks were often observed also at WTH-removal plots, which might reflect within-site differences in water pathways due largely to site topography.     

Root zone selenium reduces cadmium toxicity by modulating tissue-specific growth and metabolism in maize (Zea mays L.)

The effects of selenium (Se) cadmium (Cd) interactions on plant growth and metabolism are not fully clear. In the present study, we assessed whether Se could alleviate the toxic effects of Cd on growth and metabolism of maize. Seeds of maize variety FH-985 were sown in pots filled with sand treated with CdCl₂ (0, 50 and 100 µM) and Se (0, 2 and 4 mg L^?1) through Hoagland’s nutrient solution. Low Se (2 mg L^?1) increased germination percentage and rate, while high Se (4 mg L^?1) increased fresh and dry biomass under Cd stress. Interestingly, all Se concentrations were effective in alleviating the toxic effects of Cd on photosynthetic pigments, whereas higher Se mitigated the Cd-induced oxidative stress and increased flavonoids both in the shoots and roots while phenolics in the roots. The results demonstrated that root zone Se altered tissue-specific primary metabolism in maize. Furthermore, low Se mitigated the Cd-induced decrease in total proteins in the root. Overall, Se-mediated decrease in the oxidative stress in the shoots while increase of secondary metabolites in the roots helped the plants to grow faster at early growth stage and caused increase in the biomass under different Cd regimes.     

Nutritional Qualities of the Low-Value Bivalve Mollusks Paphia malabarica and Villorita cyprinoides at the Estuarine Waters of the Southwestern Coast of India

The bivalve mollusks Paphia malabarica and Villorita cyprinoides collected from the estuarine system located in the southwest coastal waters of India were evaluated for their nutritional composition. A balanced essential to nonessential amino acid ratio (> 1.0) with a greater quantity of sulfur-containing amino acids in these species demonstrated that they could provide well-balanced protein depositions. The n-3/n-6 polyunsaturated fatty acid ratio in P. malabarica was found to be greater than 2, and, therefore, can be considered as a healthy diet. The C₂₀–C₂₂ long-chain polyunsaturated n-3 fatty acids (for example, docosahexaenoic acid and eicosapentaenoic acid) accounted for more than 23% of the total fatty acid content in P. malabarica as compared to about 7% in V. cyprinoides. P. malabarica showed greater hypocholesterolemic/hypercholesterolemic ratio (1.7) and lesser atherogenicity (0.7), thrombogenicity (0.3) indices when contrasted with those in V. cyprinoides, thereby indicating the nutritional superiority of the former. A greater content of vitamin D₃ (> 150 IU), along with significant quantities of calcium and phosphorus (> 500 mg/100 g) in the clams, signified their importance in preventing osteoporosis. This study demonstrated the importance of bivalves, in particular, P. malabarica as a valued species for human consumption.     

Development of liquid chromatography mass spectrometry method for analysis of organic N monomers in soil

The aim of this study was to develop an analytical procedure based on liquid chromatography-mass spectrometry (LC–MS) for analysis of monomeric organic N compounds in soil extracts. To benchmark the developed LC–MS method it was compared with a capillary electrophoresis–mass spectrometry (CE–MS) method recently used for analysis of small organic N monomers in soil. The separation was optimized and analytical performance assessed with 69 purified standards, then the LC–MS method was used to analyse soil extracts. Sixty-two out of 69 standards were analysable by LC–MS with separation on a hydrophilic interaction liquid chromatography column. The seven compounds that could not be analysed were strongly cationic polyamines. Limits of detection for a 5 μL injection ranged between 0.002 and 0.38 μmol L⁻¹, with the majority (49 out of 62) having limits of detection better than 0.05 μmol L⁻¹. The overall profile and concentration of small organic N monomers in soil extracts was broadly similar between LC–MS and CE–MS, with the notable exception of four ureides that were detected by LC–MS only. In soil extracts that had been concentrated ten-fold the detection and quantification of (some) organic N compounds was compromised by the presence of large amounts of inorganic salts. The developed LC–MS method offered advantages and disadvantages relative to CE–MS, and a combination of the two methods would achieve the broadest possible coverage of organic N in soil extracts.     

Crop and cattle production responses to tillage and cover crop management in an integrated crop–livestock system in the southeastern USA

Integrated crop–livestock systems can help achieve greater environmental quality from disparate crop and livestock systems by recycling nutrients and taking advantage of synergies between systems. We investigated crop and animal production responses in integrated crop–livestock systems with two types of winter cover cropping (legume-derived N and inorganic fertilizer N), two types of tillage [conventional disk (CT) and no tillage (NT)], and whether cover crops were grazed by cow/calf pairs or not. The 13-ha field study was a modification of a previous factorial experiment with four replications on Ultisols in Georgia, USA. Recurring summer drought severely limited corn and soybean production during all three years. Type of cover crop had little influence and grazing of cover crops had minor influence on crop production characteristics. Cattle gain from grazing of winter cover crops added a stable component to production. No-tillage management had large positive effects on corn grain (95 vs. 252 g m⁻² under CT and NT, respectively) and stover (305 vs. 385 g m⁻²) production, as well as on soybean grain (147 vs. 219 g m⁻²) and stover (253 vs. 375 g m⁻²) production, but little overall effect on winter wheat grain (292 g m⁻²) and stover (401 g m⁻²) production. Our results suggest that robust, diversified crop–livestock systems can be developed for impoverished soils of the southeastern USA, especially when managed under no tillage to control environmental quality and improve resistance of crops to drought.     

Effects of supplementary feeds with different protein levels on growth and economic performances of Nile tilapia (Oreochromis niloticus) cultured in a rain-fed rice–fish ecosystem

This study investigated the effects of supplementary feeds with different crude protein (CP) levels on the growth and economic performances of sex-reversed Nile tilapia (Oreochromis niloticus) reared in a rain-fed rice–fish ecosystem for a period of 120 days. There were four treatments—namely, traditional feed (21% CP), formulated feed (26% CP), commercial feed (30% CP), and control (no feed was used)—with three replicates per treatment. Fish (30.04 g) were stocked in ditches at a rate of 0.5 fish m^?2 considering the total area and fed one of the tested feeds twice daily at the rate of 2%–5% of body weight. Water-quality parameters of the ditches were monitored fortnightly, and these parameters were found suitable for fish farming. Organic matter, total nitrogen, and available phosphorous in soil were increased significantly (P < 0.05) in the feed treatments after fish cultivation. Highly significant weight gain and SGR were observed with fish fed the commercial feed as compared with other treatments. The highest benefit-cost ratio (2.15) was found in the control, followed by formulated feed (1.90), but in the case of numerical net return, it was the opposite. However, commercial feed showed the lowest benefit-cost ratio (1.67) due to higher feed cost than other supplementary feeds. Therefore, this study suggests that fish fed with a formulated feed (26% CP) produced significantly higher net economic return in the rice–fish farming system.