Predicting the age of fish using general and generalized linear models of biometric data: A case study of two estuarine finfish from New South Wales, Australia

Direct ageing of fish can be a laborious and expensive task when age estimates from a large population are required, and often involves a degree of subjectivity. This study examined the application of general and generalized linear models that predict the age of fish from a range of efficiently and objectively measured covariates. The data sampled were from yellowfin bream (Acanthopagrus australis (Sparidae) (Owen, 1853)) and sand whiting (Sillago ciliata (Sillaginidae) Cuvier, 1829) populations from New South Wales, Australia. The covariates evaluated in the models were fish length, otolith weight, sex and location (the estuary from which the fish were sampled). Akaike Information Criteria were used for model selection and residual plots of the final models revealed a satisfactory fit to the observations. The best fitting model for each species included all covariates. An additional investigation considered whether general and generalized linear models that predict age from two different categories of biometric information outperform age-length keys with respect to subsequent estimates of total mortality from catch-curve analysis. The two categories of biometric information differed in the ease and cost with which the information could be collected. The first category only included fish length and location as covariates, whilst the second category also included otolith weight and sex. It was found that traditional age-length keys outperformed the predictive models that estimated age from only fish length and location, because the results from the models were prone to significant bias. However, when otolith weight and sex were added as covariates to the predictive models, some of them, including a generalized linear model with a Poisson-distributed response variable, performed similarly to the age-length key. Given that otolith weight and the sex of fish are cheaper to quantify than age from a sectioned otolith in many situations, general or generalized linear models may represent a cheaper and faster method of estimating mortality compared to age-length keys. Such models can also easily incorporate the influence of spatial, temporal and demographic variation.     

Relationship between zooplankton abundance and the early marine life history of juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> in eastern Hokkaido,Japan

Interannual variations in abundance, timing of outmigration from rivers, growth rate and condition of juvenile chum salmon (Oncorhynchus keta) were studied in the Nemuro Strait (eastern Hokkaido, Japan) during 1999–2002 to establish a possible relationship to zooplankton abundance. The otolith microstructure of juveniles was examined each year in late June to determine their time and size at sea entry (i.e., outmigration), and to estimate the early marine growth rates. Salmon outmigration peaked in mid- or late May, which coincided, in three of the four study years, with the peak release of juveniles into rivers within the study area. Abundance, growth rate and condition of fish were higher in 2001, when—compared to other years—smaller fish experienced higher growth rates, coinciding with greater zooplankton abundance for that year. Our results suggest that high zooplankton abundance positively influenced juvenile chum salmon growth and the condition of the fish during their early marine life despite their small size at sea entry.     

Validation of the otolith increment deposition ratio using alizarin marks in juveniles of the sparid fishes, Diplodus vulgaris and D. puntazzo

Deposition rate of otolith increments was validated by two immersions in alizarin complexone 10 days apart in juvenile Diplodus vulgaris and D. puntazzo. Alizarin complexone produced a well-defined scarlet band on the otoliths of all individuals. One increment:one day ratio was found for both species.     

Stable isotope variations in otoliths of Pacific halibut (Hippoglossus stenolepis) and indications of the possible 1990 regime shift

Stable oxygen and carbon isotope ratios (δ¹⁸O and δ¹³C) from archived otoliths of Pacific halibut, Hippoglossus stenolepis, were measured to examine the most recent regime shifts in British Columbia and the Gulf of Alaska. δ¹⁸O values of these otoliths ranged from −1.5 to +2.8‰ VPDB, and were consistent with the life stages and migration behavior of halibut. δ¹³C varied from −3.3 to +0.9‰ VPDB, but did not show a transition from the juvenile to the adult stage as does δ¹⁸O. Evaluation of δ¹⁸O and δ¹³C values of mature halibut (ages 8–12) indicated that the 1977 regime shift might have a warming impact on the northeast Pacific fish stocks. In contrast, a possible regime shift around 1990 with a bottom seawater temperature decrease of about 2 °C might have occurred in both the areas. The connection between stable isotope variations in otoliths and the climate regime shifts is thus potentially useful in studying the population dynamics of Pacific halibut, and decadal scale (e.g., the last 20–30 years) ocean environmental changes.     

Does otolith macrostructure record environmental or biological events? The case of black hake (Merluccius polli and Merluccius senegalensis)

Fish age determination using otoliths requires a prior understanding of growth mark deposition patterns (translucent rings, TR) as well as their connection with internal or external events experienced by the fish. This study analysed the macrostructural seasonal ring deposition pattern observed in transversal sections of black hake otoliths. A total of 793 black hake otoliths were collected in autumn and spring 2007 from research and commercial surveys carried out in continental and shelf waters off Mauritania. Most of the Merluccius polli otoliths presented narrow and wide translucent rings (NTR and WTR, respectively) regardless of fish size, whereas Merluccius senegalensis otoliths only showed NTR. This seemed to be a sign of ontogenetic discrepancy between the two black hake species, whose otoliths confirmed the existence of significant differences in their growth patterns.The frequency distributions of the number of TR counted along the ventral radius (VR) of the otolith from the nucleus (birth date) and from the ventral edge (death date) were analysed to ascertain whether a specific endogenous event (Hypothesis A) or a precise environmental event (Hypothesis B) could restrain growth leading to the formation of TR. The general TR frequency distribution pattern was somewhat similar for both hake species, which showed marked TR at comparable distances. Within each species, TR frequency distributions of their distances from the nucleus along the otolith VR were quite similar between sexes, seasons, and fish sizes. Our results support the idea of a coincident biological event, such as first maturity, slowing down the growth process and thus provoking the formation of TR in otoliths of both species.This study also experience difficulty using the complex and highly variable macrostructural pattern of black hake otoliths to establish age interpretation criteria for these two species.     

温度和元素浓度对Sr在褐牙鲆仔稚鱼耳石中的沉积影响

科学认识鱼类耳石中微量元素沉积与主要水环境因子的关系是基于耳石微化学方法重新构建鱼类生活史及反演其环境履历的重要前提。本研究以环境与耳石中重要元素Sr为例，研究在不同水温(16℃、19℃和22℃)和不同元素浓度(1×、2×和3×Sr)下Sr在褐牙鲆(Paralichthys olivaceus)仔稚鱼耳石形成生长过程中(孵化后15~93 d)的沉积(Sr∶Ca比)特征。结果显示，在不同水温下，耳石中Sr∶Ca比随水体中Sr浓度的升高呈线性增长，而元素分配系数(DSr)随元素浓度的升高先降低然后趋于稳定。在不同Sr浓度下，耳石中Sr∶Ca比及DSr均随水温升高呈增长趋势，二者在22℃时的值均显著高于在其他水温时的值。耳石中Sr沉积能够表征褐牙鲆仔稚鱼所经历的水环境中Sr浓度和水温的变化，可作为元素指纹应用于褐牙鲆早期生活史的重建和环境履历的反演。     

The utility of otolith weight as a predictor of age in the emperor Lethrinus mahsena and other tropical fish species

This study examines the potential use of otolith weight as a proxy for age in the lethrinid Lethrinus mahsena from different sites in the tropical Indian Ocean: the banks of Seychelles, Mauritius and British Indian Ocean Territory (BIOT, Chagos Archipelago). The reliability of age–frequency distributions and individual ages estimated using otolith weight–age relationships was examined through comparison with those estimated through the standard method of ageing using otolith increments. Two other methods for estimating age–frequencies using age-slicing via an estimated growth curve were also examined; these used growth curves estimated by a length-based method (ELEFAN), or by fitting directly to length-at-age data (an ‘age-based’ method). Age-slicing using length-based growth parameters failed to produce reliable age–frequencies, due to inaccuracies in the growth parameter estimates. The use of age-based growth parameter estimates improved the results of age-slicing, however, age–frequencies remained significantly different from those obtained from ageing using otolith increments in two locations. The use of otolith weight–age relationships resulted in estimated age–frequency distributions that in all locations were not significantly different from those assessed through otolith increment counts. In contrast, L. mahsena otolith weight–age relationships could not be used to estimate individual ages accurately, due to the level of overlap in otolith weight between age classes. Where otolith increments are routinely used to age commercial fish species, the fact that otolith weight–age relationships could not be used to age individuals accurately may limit its application. However, where routine ageing of individuals through otolith increments is considered impractical, for instance because of its cost, the use of otolith weight–age relationships to derive catch age–frequencies represents a viable alternative approach. With this in mind, this study has also demonstrated that there is the potential to use otolith weight–age relationships for five other species caught around the Seychelles, following the validation of their otolith increments.     

Life-history traits of eight <Emphasis Type="Italic">Lethrinus</Emphasis> species from two local populations in waters off the Ryukyu Islands

The number of growth rings was counted on broken and burnt otoliths of eight Lethrinus spp. from two local populations: Lethrinus atkinsoni, L. harak, L. miniatus, L. nebulosus, L. obsoletus, L. ornatus, L. ravus, and L. rubrioperculatus, collected from 1985 to 1996 in waters off the Ryukyu Islands. Growth rings were revealed to be formed annually from about October to June by marginal analysis. In addition to obtaining the three parameters in von Bertalanffy growth equation and the maximum age in specimens, the relationship between age and both ovarian maturity rate and sex ratio (percentage female) was analyzed. The age at 50% of ovarian maturity was the lowest at 1–2 years old in L. harak, L. ravus, and L. rubrioperculatus and was the highest at approximately 4 years old in L. nebulosus. The age at which the sex ratio decreased to 50% due to sexual transition from female in protogynous hermaphrodite species was the lowest at 3–4 years old in the L. atkinsoni Okinawa population and was the highest at 7–8 years old in L. miniatus. The oldest maximum age for specimens was 26 years in L. nebulosus and the youngest maximum age was 12 years in L. ornatus.     

Comparison of the nutritional transition date distributions of marbled sole larvae and juveniles in Hakodate Bay, Hokkaido

To examine survival processes in marbled sole Pseudopleuronectes yokohamae larvae, nutritional transition date distributions (NTDDs) were compared between larvae and large juveniles (LJs) in Hakodate Bay from 2001 to 2003. NTDDs were used instead of hatch date distributions because the onset of increment formation coincides with the timing of the transition from endogenous to exogenous nutritional sources for marbled sole. LJs were defined as being large enough to be safe from predation by the sand shrimp Crangon uritai. In 2001 and 2002, the ranges of the NTDDs of LJs largely overlapped with those of the larvae. However, in 2003, the early cohort (those whose otolith rings formed before 17 March) disappeared from the NTDDs during and after April, and the NTDDs of LJs were heavily biased toward a later period compared to those of the larvae. In 2003, Oyashio coastal water (<3°C and ≤33.0 salinity) unexpectedly intruded into the bay in late March and lowered the water temperature from 6.3°C on 6 March to 4.1°C on 25 March. One possible cause of mortality in the early cohort of 2003 may be feeding failure caused by the extremely low water temperature.     

Daily and sub-daily otolith increments of larval and juvenile walleye pollock, Theragra chalcogramma (Pallas), as validated by alizarin complexone experiments

Walleye pollock (Theragra chalcogramma) were reared from eggs to the juvenile life stage to study daily increment formation in the sagittae otoliths, which are routinely used for age and growth analyses. The apparent deposition of sub-daily growth increments becomes problematic for determining fish age from the late larval stage throughout the juvenile (young-of-the-year) development stage. Otolith marking experiments were conducted to determine interpretation criteria to differentiate between daily and sub-daily increments. Immersion of larval and transforming walleye pollock in 25 mg/l of alizarin complexone (ALC) for 6 h once a week produced a fluorescent mark on the day of staining. Evidence of six well defined and equally spaced increments counted between the weekly ALC marks validated the deposition of daily increments. The daily increments gradually increased in width as the fish/otolith grew. The criteria for determining the presence of sub-daily increments between the daily increments were (1) weak optical definition and (2) a sudden change in incremental distance that lasted for one or two increments and were approximately <0.5 μm in width. Growth problems that occurred during the experiments were identified on otoliths as reductions in daily incremental widths and optical definition, which continued for several days. Otoliths from field-collected fish have also shown similar changes in daily increment properties during the juvenile stage, which may be an indicator of an environmental influence. The criteria for defining different increment types help to resolve our current age determination issues for late larval and early juvenile stage walleye pollock from the Gulf of Alaska.