Earthworm,Eisenia fetida,bedding meal as potential cheap fishmeal replacement ingredient for semi‐intensive farming of Nile Tilapia,Oreochromis niloticus

The study amalgamated earthworm and agro‐industrial wastes through vermicomposting and then evaluated the potential of the bedding (mixture of Eisenia fetida and vermicompost) to replace fishmeal in semi‐intensive farming of Oreochromis niloticus. The bedding was used to substitute fishmeal at inclusion rates of 100, 60, 30 and 0% (D100, D60, D30 and control D0). In triplicates, the four homogeneous diets were fed to quadruplicate groups of 30 g O. niloticus for 112 days. There was no significant difference (p > .05) in mortalities, average length gain and FCR among all tests. Nevertheless, diet D0 had significantly (p < .05) superior amino acid profile, low fibre content and fish carcass crude protein (63.2 ± 0.72% dry matter). Subsequently, D30 and D0 produced fish with significantly higher (p < .05) mean weight gain (256.03 ± 0.4 g) and biomass (369,136 g) respectively. On to the contrary, diet D100 had significantly higher (p < .05) crude lipids content (9.4 ± 0.6% dry matter), economic returns and profit index than the control diet due to the comparatively low cost of producing the earthworm bedding. This simple biotechnology can commercially be upscaled to sustainably produce cheap and nutritious fish feed capable of increasing yields and maximizing profits.     

Ace and ace-like genes of invasive redlegged earth mite: copy number variation,target-site mutations,and their associations with organophosphate insensitivity

Background

Invasive Australian populations of redlegged earth mite, Halotydeus destructor (Tucker), are evolving increasing organophosphate resistance. In addition to the canonical ace gene, the target gene of organophosphates, the H. destructor genome contains many radiated ace-like genes that vary in copy number and amino acid sequence. In this work, we characterise copy number and target-site mutation variation at the canonical ace and ace-like genes and test for potential associations with organophosphate insensitivity. This was achieved through comparisons of whole-genome pool-seq data from alive and dead mites following organophosphate exposure.

Results

A combination of increased copy number and target-site mutations at the canonical ace was associated with organophosphate insensitivity in H. destructor. Resistant populations were segregating for G119S, A201S, F331Y at the canonical ace. A subset of populations also had copy numbers of canonical ace > 2, which potentially helps overexpress proteins carrying these target-site mutations. Haplotypes possessing different copy numbers and target-site mutations of the canonical ace gene may be under selection across H. destructor populations. We also detected some evidence that increases in copy number of radiated ace-like genes are associated with organophosphate insensitivity, which might suggest potential roles in sequestration or breakdown of organophosphates.

Conclusion

Different combinations of target-site mutations and (or) copy number variation in the canonical ace and ace-like genes may provide non-convergent ways for H. destructor to respond to organophosphate selection. However, these changes may only play a partial role in organophosphate insensitivity, which appears to have a polygenic architecture. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

Impact of foot-and-mouth disease on mastitis and culling on a large-scale dairy farm in Kenya

Foot and mouth disease (FMD) is a highly transmissible viral infection of cloven hooved animals associated with severe economic losses when introduced into FMD-free countries. Information on the impact of the disease in FMDV-endemic countries is poorly characterised yet essential for the prioritisation of scarce resources for disease control programmes. A FMD (virus serotype SAT2) outbreak on a large-scale dairy farm in Nakuru County, Kenya provided an opportunity to evaluate the impact of FMD on clinical mastitis and culling rate. A cohort approach followed animals over a 12-month period after the commencement of the outbreak. For culling, all animals were included; for mastitis, those over 18 months of age. FMD was recorded in 400/644 cattle over a 29-day period. During the follow-up period 76 animals were culled or died whilst in the over 18 month old cohort 63 developed clinical mastitis. Hazard ratios (HR) were generated using Cox regression accounting for non-proportional hazards by inclusion of time-varying effects. Univariable analysis showed FMD cases were culled sooner but there was no effect on clinical mastitis. After adjusting for possible confounders and inclusion of time-varying effects there was weak evidence to support an effect of FMD on culling (HR = 1.7, 95% confidence intervals [CI] 0.88-3.1, P = 0.12). For mastitis, there was stronger evidence of an increased rate in the first month after the onset of the outbreak (HR = 2.9, 95%CI 0.97-8.9, P = 0.057).

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-015-0173-4) contains supplementary material, which is available to authorized users.     

Vaccination of pigs with the S48 strain of Toxoplasma gondii – safer meat for human consumption

As clinical toxoplasmosis is not considered a problem in pigs, the main reason to implement a control strategy against Toxoplasma gondii (T. gondii) in this species is to reduce the establishment of T. gondii tissue cysts in pork, consequently reducing the risk of the parasite entering the human food chain. Consumption of T. gondii tissue cysts from raw or undercooked meat is one of the main sources of human infection, with infected pork being considered a high risk. This study incorporates a mouse bioassay with molecular detection of T. gondii DNA to study the effectiveness of vaccination (incomplete S48 strain) in its ability to reduce tissue cyst burden in pigs, following oocyst (M4 strain) challenge. Results from the mouse bioassay show that 100% of mice which had received porcine tissues from vaccinated and challenged pigs survived compared with 51.1% of mice which received tissues from non-vaccinated and challenged pigs. The presence (or absence) of T. gondii DNA from individual mouse brains also confirmed these results. This indicates a reduction in viable T. gondii tissue cysts within tissues from pigs which have been previously vaccinated with the S48 strain. In addition, the study demonstrated that the main predilection sites for the parasite were found to be brain and highly vascular muscles (such as tongue, diaphragm, heart and masseter) of pigs, while meat cuts used as human food such as chop, loin, left tricep and left semitendinosus, had a lower burden of T. gondii tissue cysts. These promising results highlight the potential of S48 strain tachyzoites for reducing the number of T. gondii tissues cysts in pork and thus improving food safety.     

To pool or not to pool? Guidelines for pooling samples for use in surveillance testing of infectious diseases in aquatic animals

Samples from multiple animals may be pooled and tested to reduce costs of surveillance for infectious agents in aquatic animal populations. The primary advantage of pooling is increased population‐level coverage when prevalence is low (<10%) and the number of tests is fixed, because of increased likelihood of including target analyte from at least one infected animal in a tested pool. Important questions and a priori design considerations need to be addressed. Unfortunately, pooling recommendations in disease‐specific chapters of the 2018 OIE Aquatic Manual are incomplete and, except for amphibian chytrid fungus, are not supported by peer‐reviewed research. A systematic review identified only 12 peer‐reviewed aquatic diagnostic accuracy and surveillance studies using pooled samples. No clear patterns for pooling methods and characteristics were evident across reviewed studies, although most authors agreed there is a negative effect on detection. Therefore, our purpose was to review pooling procedures used in published aquatic infectious disease research, present evidence‐based guidelines, and provide simulated data examples for white spot syndrome virus in shrimp. A decision tree of pooling guidelines was developed for use by peer‐reviewed journals and research institutions for the design, statistical analysis and reporting of comparative accuracy studies of individual and pooled tests for surveillance purposes.     

Living in an amphidromous world: Perspectives on the management of fish passage from an island nation

1. Amphidromy is a form of migratory life history typified by the reproduction of fish in freshwater environments, the early downstream dispersal of post‐hatch larvae to marine environments, and the return of small‐bodied young juveniles to freshwater environments for growth to adulthood. Island freshwater fish communities are frequently dominated by fish species with amphidromous life histories.
2. Amphidromous life cycles leave fish communities highly susceptible to habitat modification and disruptions to connectivity across marine and freshwater environments. This means that managing waterway connectivity is fundamental to their conservation; however, the unique and often geographically restricted amphidromous communities that characterize many small island nations have received little consideration in the development of strategies for the management of fish passage.
3. The ecology and locomotory capabilities of amphidromous species are often poorly studied, partly because their small size at migratory life stages renders current state‐of‐the‐art in situ biotelemetry methods unsuitable. The small size of fish also means that seemingly small obstructions can severely impede migrations.
4. The steps necessary to advance the management of fish passage for island fish communities are: curating and maintaining barrier inventories; evaluating barrier permeability; developing effective barrier mitigation options; and prioritizing restoration and conservation efforts.
5. New methods for understanding the ecology and locomotory capabilities and behaviour of amphidromous fishes are required to advance the management of fish passage for island fish communities. Fish passage solutions that imitate natural streams, such as those promoted in new guidelines in New Zealand, may be the most effective way of improving waterway connectivity; however, integrated approaches to freshwater fish conservation that account for meta‐population dynamics, in combination with the management of fish passage, are necessary to optimize conservation outcomes for amphidromous species.

     

Use of state‐space modelling to identify ecological covariates associated with trends in pinniped demography

1. Identifying and understanding ecological drivers that influence wildlife populations is challenging but critical for conservation. This typically requires integrating long‐term data on both the population and potential drivers within statistical models that are suitable for analysing these complex relationships. State‐space models offer one method for integrating such data. Once implemented within a Bayesian framework, these analyses can control for multifactorial influences on populations, allowing one to extract otherwise undetectable correlations between the environment and the underlying, inferred demography.
2. In the Moray Firth, Scotland, harbour seals have been counted annually for 30 years (1988–2018). A Bayesian state‐space model was used to explore whether patterns in vital rates were correlated to changes in prey abundance, inter‐specific competition (grey seal abundance), environmental variables [the North Atlantic Oscillation (NAO) and sea‐surface temperature], or level of biotoxins (saxitoxin and domoic acid) in the Moray Firth waters.
3. The credible interval of the posterior distributions of three of these covariate coefficients (sandeel proxy, NAO and grey seal abundance) suggested that there was a relationship between those covariates and vital rates. Both the sandeel proxy and NAO showed a positive correlation with fecundity, whereas grey seal abundance had a negative impact on pup survival.
4. This work demonstrates how an integrated state‐space modelling approach can bring together diverse data sets and point to important interactions with prey, and with other predators in the system. This suggests that the wider‐scale management of UK harbour seal populations with their contrasting temporal trends needs to account for variation in the marine ecosystem at appropriate spatial scales, in line with current policy concerning spatial planning in the marine environment.