Modeling patch occupancy: Relative performance of ecologically scaled landscape indices

In fragmented landscapes, the likelihood that a species occupies a particular habitat patch is thought to be a function of both patch area and patch isolation. Ecologically scaled landscape indices (ESLIs) combine a species’ ecological profile, i.e., area requirements and dispersal ability, with indices of patch area and connectivity. Since their introduction, ESLIs for area have been modified to incorporate patch quality. ESLIs for connectivity have been modified to incorporate niche breadth, which may influence a species’ ease in crossing the non-habitat matrix between patches. We evaluated the ability of 4 ESLIs, the original and modified indices of area and connectivity, to explain patterns in patch occupancy of 5 forest rodents. Occupancy of eastern gray squirrels (Sciurus carolinensis), North American red squirrels (Tamiasciurus hudsconicus), fox squirrels (Sciurus niger), white-footed mice (Peromyscus leucopus), and eastern chipmunks (Tamias striatus) was modeled at 471 sites in 35 landscapes sampled from the upper Wabash River basin in Indiana. Models containing ESLIs received support for gray squirrels, red squirrels, and chipmunks. Modified ESLIs were important in models for red squirrels. However, none of the models demonstrated high predictive ability. Incorporating habitat quality and using surrogate measures of dispersal can have important effects on model results. Additionally, different responses of species to area, isolation, and habitat quality suggest that generalizing patterns of metapopulation dynamics was not justified, even across closely related species.     

Thresholds in landscape structure for three common deforestation patterns in the Brazilian Amazon

Although abrupt changes (i.e. thresholds) have been precisely defined in simulated landscapes, such changes in the structure of real landscapes are not well understood. We tested for threshold occurrence in three common deforestation patterns in the Brazilian Amazon: small properties regularly distributed along roads (fishbone), irregularly distributed small properties (independent settlements), and large properties. We analyzed differences between real deforestation patterns, and tested the capacity of simulated landscape with different aggregation degrees to predict threshold occurrence. Three 8×8 km sites (replicates) with more than 90% of forest in 1984 and less than 30% in 1998 were selected/simulated for each deforestation pattern. Thresholds were observed for fishbone and large property patterns, especially when considering the connectivity index, although threshold incidences were more frequently observed in simulated landscapes. The capacity of simulated landscapes to predict the exact threshold point in real landscapes was limited, even when considering highly aggregate simulations. However, the general trend in landscape structural changes was similar in real and simulated landscapes. Thresholds occurred at the beginning of the deforestation for mean patch size and at an intermediate stage, corresponding to the percolation threshold, for connectivity, isolation and fragmentation. Threshold behavior for connectivity index might suggest that the survival of strictly forest species will sharply decrease when the proportion of forest reach values <0.60, indicating that conservation efforts should be done to maintain forest cover above this limit. Significant differences observed among the real deforestation patterns, especially in patch isolation and number of fragments, can have significant consequences for conservation. The independent settlement pattern is, without a doubt, the least favorable of them, resulting in a higher level of fragmentation, whereas the large property and fishbone patterns may be less detrimental if connectivity among the remnant forest patches is preserved.     

Landscape factors and regional differences in recovery rates of herb layer richness in Flanders (Belgium)

The recovery of understory plants in recent forests is critical for evaluating the overall capacity of landscapes to maintain plant biodiversity. Here we used a large data set of vegetation plots from the Flemish Forest Inventory in combination with maps of forest history and soil-based Potential Natural Vegetation to evaluate regional differences in the rate of recovery of understory plant diversity in three regions of Flanders, Belgium. We expressed the degree of recovery in recent forests using the species richness of ancient forests as a reference point, and found strong differences among regions in the average level of recovery. These differences appeared to be due to regional variation in average patch connectivity and age (ultimately stemming from differences in land use history) and – to a lesser extent – environmental conditions. We also found an increase in the proportional representation of vertebrate dispersed species and species with short-distance dispersal with increasing levels of recovery. Our results highlight the potential drivers of inter-regional variation in the process of recovery of plant diversity during restoration, and they emphasize the importance of historical and spatial context in the recovery process.     

Behavior of class-level landscape metrics across gradients of class aggregation and area

Habitat loss and fragmentation processes strongly affect biodiversity conservation in landscapes undergoing anthropogenic land use changes. Many attempts have been made to use landscape structure metrics to quantify the independent and joint effects of these processes. Unfortunately, ecological interpretation of those metrics has been plagued by lack of thorough understanding of their theoretical behavior. We explored behavior of 50 metrics in neutral landscapes across a 21-step gradient in aggregation and a 19-step gradient in area using a full factorial design with 100 replicates of each of the 399 combinations of the two factors to assess how well metrics reflected changes in landscape structure. Metric values from real landscapes were used to determine the extent of neutral landscape space that is represented in real landscapes. We grouped metrics into three major behavioral classes: strongly related to focal class area (n=15), strongly related to aggregation (n=7), and jointly responding to area and aggregation (n=28). Metrics strongly related to class area exhibited a variety of distinct behaviors, and many of these metrics have unique interpretations that make each of them particularly useful in certain applications. Metrics strongly related to aggregation, independent of class area, are particularly useful in assessing effects of fragmentation. Moreover, metrics in this group exhibited a range of specific behaviors, highlighting subtle but different aspects of landscape aggregation even though we controlled only one aspect of aggregation. The non-linear behavior exhibited by many metrics renders interpretation difficult and use of linear analytical techniques inappropriate under many circumstances. Ultimately, comprehensive characterization of landscapes undergoing habitat loss and fragmentation will require using several metrics distributed across behavioral groups.This revised version was published online in May 2005 with corrections to the Cover Date.     

Estimating the consequences of habitat fragmentation on extinction risk in dynamic landscapes

Analyzing the population dynamic consequences of spatio-temporal changes in landscape structure is a formidable challenge for spatial ecology. One key population dynamic process in fragmented landscapes is the influence of isolation on colonization rate and thereby on the occurrence of species in habitat fragments, but it is not obvious how isolation should be measured in landscapes that are affected by on-going habitat loss and fragmentation. We suggest the following procedure for the measurement of spatio-temporal isolation. First, a historical record of habitat loss and fragmentation in the landscape is prepared based on snapshots of the extent of the suitable habitat for the focal species. Second, a metapopulation model is used to simulate the occurrence of the species in this landscape, assuming the empirically observed landscape change. The model-predicted pattern of habitat occupancy at a particular point in time (usually the present time) is then compared with empirical observations on the occurrence of the species. We describe a metapopulation model that has been constructed for this purpose, and we apply it to a changing landscape of boreal forests in eastern Finland. We give an example on the occurrence of four threatened polyporous fungi in 18 small fragments of old-growth forest. In none of the species does the current isolation of the fragments nor the time since their isolation explain the occurrence of the species in the study fragments, but in three species the model-predicted occupancy probability had a significant effect on the observed abundance of the species. The model-predicted occupancy probabilities were also calculated by ignoring past landscape changes, that is, by assuming that the landscape had remained in the present configuration for a long time. These probabilities had a significant effect on the abundance of only one of the four species, suggesting that the occurrence of the species tracks landscapes changes with a noticable time lag.This revised version was published online in May 2005 with corrections to the Cover Date.     

Fish nursery habitat function of the main channel,floodplain tributaries and oxbow lakes of a medium‐sized river

Small, adventitious tributaries (<3 orders of magnitude smaller than the stream it flows into) are a conspicuous feature of many river–floodplain systems, but their value as fish reproduction and nursery habitat is not well understood compared to oxbow lakes and the main river channel (MRC). Moreover, connectivity of tributaries to the MRC is often less impacted by anthropogenic modifications (e.g., dams and levees) compared to oxbow lakes. From April to July 2012, larval and juvenile fish were collected in the Fourche LaFave River (Arkansas, USA) system to better understand fish nursery habitat function of tributaries relative to oxbow lakes and the MRC. Nonmetric multidimensional scaling ordination of juvenile and larval fish genera revealed distinct fish assemblages in MRC and floodplain habitats. Ordination of juvenile fish at the species level resulted in distinct fish assemblages in tributary versus oxbow lake habitats. Tributaries had more unique species and higher abundance of shared species than oxbow lakes and MRC. Additionally, of the 46 species identified, all but six were collected in lower tributary reaches. Connectivity was strongly associated with both ordinations and was important in describing patterns of fish variation among habitats and between tributaries. Of the tributaries sampled, the least fragmented stream had the most similar fish assemblages between upper and lower sections. Findings of this study revealed tributaries are an important, yet overlooked, feature in the river–floodplain model. Especially in years of drought, channel–floodplain connectivity can be limited, but tributaries can be used by fishes for reproduction and nursery habitat.     

Applying spatial conservation prioritization software and high-resolution GIS data to a national-scale study in forest conservation

We apply a recently developed conservation prioritization method (Zonation algorithm) to a national-scale conservation planning task. The Finnish Forest and Park Service (Metsähallitus) was given the mandate to expand the current protected areas in southern Finland by 10 000 ha. The question is which areas should be selected out of the total area of 1 760 000 ha. The data available include a nation-wide GIS data set describing general features of forests at the resolution of 25 m × 25 m for entire Finland and another data set about biodiversity features within the current state-managed conservation areas. Ecologically, the key information includes forest age and the volume of growing stock for 20 forest types representing different productivity classes and dominant tree species. Our analysis employs four different connectivity components to identify forest areas that are (i) locally of high quality and internally well connected, (ii) well connected to surrounding high-quality forests, (iii) well connected to existing conservation areas, and (iv) large enough to allow efficient implementation. Expert evaluation of the results suggested that the present quantitative analysis was helpful in identifying areas with high conservation value systematically across southern Finland. Our analysis also showed that the highest forest conservation potential in Finland is located on privately owned land. The present techniques can be applied to many large-scale planning and management projects.     

High levels of habitat loss and fragmentation limit reproductive success by reducing home range size and provisioning rates of Northern saw-whet owls

Studies of the effects of habitat fragmentation have been heavily biased toward population and community questions, with less attention on the effects of habitat loss and fragmentation on individual behaviour and reproduction. We studied the effects of habitat amount and configuration on the foraging behaviour, provisioning rates and physiological condition of breeding male northern saw-whet owls (Aegolius acadicus) nesting in the fragmented aspen parkland of central Alberta, Canada. We then examined the relationship between provisioning behaviour and both reproductive success, and juvenile physiological condition. Males nesting in areas with little forest cover and large inter-patch distances spent more time perching, maintained smaller home ranges, and provisioned their nests less frequently. However, home range size and provisioning rates levelled off in landscapes with moderate to high forest cover. Male owls breeding in areas with low forest cover, and those raising large broods, also exhibited higher levels of chronic stress, as measured by heterophil/lymphocyte (H/L) ratios. Predictably, males that provisioned the nest less often fledged fewer young, which, in turn, exhibited higher variation in physiological condition. These results suggest that low levels of habitat loss and fragmentation may be beneficial to saw-whet owls, potentially by increasing prey abundance. However, high levels of habitat loss and fragmentation appeared to reduce the foraging efficiency of male saw-whet owls, increase their levels of physiological stress, and reduce their reproductive success. Increasing habitat loss and fragmentation may ultimately decrease population sizes of saw whet owls in this area and other species that are similarly affected by changes to in habitat composition or configuration.     

最小生成树算法的一种实现方法及其在代数理论上的探讨

图论中最小生成树问题的算法在现实中应用非常广泛,本文先根据其中的Kruskal算法的步骤并结合数据结构中单链表的特点对在计算机中如何实现这一问题进行了阐述和分析,最后又更加深入地探讨了如何利用代数理论来判定最小生成树涉及到的简单无向图连通性问题。     

A Practical Map-Analysis Tool for Detecting Potential Dispersal Corridors

We describe the Pathway Analysis Through Habitat (PATH) tool, which can predict the location of potential corridors of animal movement between patches of habitat within any map. The algorithm works by launching virtual entities that we call `walkers' from each patch of habitat in the map, simulating their travel as they journey through land cover types in the intervening matrix, and finally arrive at a different habitat `island.' Each walker is imbued with a set of user-specified habitat preferences that make its walking behavior resemble a particular animal species. Because the tool operates in parallel on a supercomputer, large numbers of walkers can be efficiently simulated. The importance of each habitat patch as a source or a sink for a species is calculated, consistent with existing concepts in the metapopulation literature. The manipulation of a series of contrived artificial landscapes demonstrates that the location of potential dispersal corridors and relative source and sink importance among patches can be purposefully altered in expected ways. Finally, potential dispersal corridors are predicted among remnant woodlots within three actual landscape maps. The U.S. Government’s right to retain a non-exclusive, royalty-free license in and to any copyright is acknowledged.