Identification of potential genomic regions for egg weight by a haplotype-based genome-wide association study using Bayesian methods

ABSTRACT

1. Theoretically, haplotype blocks might be a more suitable alternative to SNP genotypes as they are usually better at capturing multi-allelic QTL effects, compared to individual SNP genotypes in genome-wide association studies. The objectives of this study were to identify genomic regions related to egg weight traits by Bayesian methods (BayesA, BayesB, and BayesN) that fit fixed-length haplotypes using GenSel software.

2. Genotypes at 294,705 SNPs, that were common on a 600K Affymetrix chip, were phased for an egg-laying hen population of 1,063 birds. Recorded traits included first egg weight (FEW) and average egg weight at 28, 36, 56, 66, 72 and 80 weeks of age.

2. Fitting 1Mb haplotypes from BayesB resulted in the highest proportion of genetic variance explained for the egg weight traits. Based on the trait, the genetic variance explained by each marker ranged from 27% to 76%.

3. Different haplotype windows associated with egg weight traits only explained a small percentage of the genetic variance.

4. The top one 1-Mb window on GGA1 explained approximately 4.05% of total genetic variance for the FEW. Candidate genes, including PRKAR2B, HMGA2, LEMD3, GRIP1, EHBP1, MAP3K7, and MYH were identified for egg weight traits.

5. Several genomic regions, potentially associated with egg weight traits, were identified, some of which overlapped with known genes and previously reported QTL regions for egg production traits.     

拥挤度和杀虫剂对蚜虫翅型分化和生长繁殖的影响

[目的]为了全面评价田间杀虫剂对害虫的非致死作用,[方法]我们选择了亚致死剂量吡虫啉和种群拥挤作为处理因子,测度了大豆蚜的产蚜量、成蚜寿命、若蚜历期及有翅蚜数量等指标,评价两个因子对蚜虫的寄主植株上种群的增殖力和转移扩散风险的影响性质及大小。[结果]结果表明：亚致死剂量吡虫啉对大豆蚜植株上种群有明显降低繁殖率的作用,从而有效减轻本地危害；另外,用药导致有翅蚜的数量显著降低,能降低蚜虫转移为害的风险。拥挤降低了第一代蚜虫种群的繁殖力,对第二代种群繁殖力没有显著影响。另一方面,拥挤造成有翅蚜数量增加,会增加蚜虫转移为害的风险。药剂和拥挤存在显著交互作用。[结论]研究表明：亚致死剂量的吡虫啉会降低大豆蚜后代的在原植株上的为害和转移为害,拥挤会消减药剂在植株上的控害作用,也会增加蚜虫转移为害的风险。     

Interactions between crop biomass and development of foliar diseases in winter wheat and the potential to graduate the fungicide dose according to crop biomass

Foliar pathogens such as Zymoseptoria tritici and Puccinia striiformis causing septoria leaf blotch and yellow rust respectively can cause serious yield reduction in winter wheat production, and control of the diseases often requires several fungicide applications during the growing season. Control is typically carried out using a constant fungicide dose in the entire field although there may be large differences in crop development and biomass across the field. The objective of the study reported in this paper was to test whether the fungicide dose response curve controlling septoria leaf blotch and other foliar diseases in winter wheat was dependent on crop development and biomass level. If such a biomass dependent dose response was found it was further the purpose to evaluate the potential to optimize fungicide inputs in winter wheat crops applying a site-specific crop density dependent fungicide dose. The study was carried out investigating fungicide dose response controlling foliar diseases in winter wheat at three biomass densities obtained growing the crop at three nitrogen levels and using variable seed rates. Further the field experiments included three fungicide dose rates at each biomass level, an untreated control, and 75%, 50% and 33% of the recommended fungicide dose rate and the experiments were replicated for three years. Crop biomass had a significant influence on occurrence of septoria and yellow rust with greater disease severity at increasing crop biomass. In two of three years, the interaction of crop biomass and fungicide dose rate had a significant influence on disease severity indicating a biomass-dependent dose response. The interaction occurred in the two years with high yield potential in combination with severe disease attack. If the variation in crop density and biomass level obtained in the study is representative of the variation found cultivating winter wheat in heterogeneous fields, then there seems to be scope for optimizing fungicide input against foliar diseases site-specific adapting the dose according to crop density/biomass.     

规模化蛋鸡场病原菌溯源与生物安全防控研究

细菌病严重威胁蛋鸡健康,以抗生素为主导的细菌病传统防控方式会导致病原菌耐药性严重、鸡蛋药物残留,影响蛋品安全。要保证蛋鸡产蛋期不用抗菌药物而又能生产出"无菌、无抗"的鸡蛋,是国内外技术难题。本团队以规模化蛋鸡场全封闭鸡舍为研究对象,基于PFGE、MLST、全基因组测序等技术,探明了蛋鸡病原菌的种类及基因组特征;对病原菌的耐药性研究表明,蛋鸡病原菌多重耐药严重,依靠药物防控的方式亟待转变;对规模化蛋鸡场细菌溯源研究结果表明,鸡舍生物媒介(鼠、苍蝇等)和非生物媒介(空气、饮水、饲料、鸡粪等)是蛋鸡病原菌的重要传染来源和传播途径;对规模化蛋鸡场生物安全量化评价结果表明,外部和内部生物安全权重高达92.2%。根据溯源和生物安全权重分析结果,提出了在规模化全封闭蛋鸡舍将蛋鸡细菌病从药物防控转变为生物安全防控的新策略;创新了规模化蛋鸡场细菌病防控的系统技术,实现蛋鸡规模养殖整个产蛋期不用抗生素,为生产"无菌、无抗"安全鸡蛋提供技术支撑。     

芽孢杆菌微生态制剂对京红1号蛋鸡产蛋性能和蛋品质的影响

试验旨在研究芽孢杆菌微生态制剂对京红1号蛋鸡产蛋性能和蛋品质的影响。选择健康、体况良好的404日龄京红1号蛋鸡960只,随机分为4组,每组6个重复,每个重复40只。对照组饲喂基础日粮,试验Ⅰ组饲喂基础日粮+益倍佳(凝结芽孢杆菌),试验Ⅱ组饲喂基础日粮+赐尔健(纳豆芽孢杆菌),试验Ⅲ组饲喂添加地衣芽孢杆菌+枯草芽孢杆菌(1∶1)混合制剂的日粮,试验组微生态制剂的添加量均为300 mg/kg。试验期25 d,其中预饲期5 d。结果显示,与对照组相比,试验组蛋鸡产蛋率均显著提高(P<0.05),破、软蛋率均显著降低(P<0.05),试验Ⅰ、Ⅱ组料蛋比显著降低(P<0.05)。与对照组相比,Ⅱ组鸡蛋平均蛋重显著提高了2.25%(P<0.05);试验组Ⅰ、Ⅱ的蛋黄相对重、蛋壳相对重、哈氏单位均无显著影响(P>0.05);试验Ⅲ组蛋壳颜色为1~3级的鸡蛋比例明显增多,差异显著(P<0.05)。综上所述,添加微生态制剂赐尔健(纳豆芽孢杆菌)可显著提高京红1号产蛋率和平均蛋重,显著降低料蛋比和破、软蛋率;添加枯草芽孢杆菌+地衣芽孢杆菌(1∶1)混合制剂可使蛋壳颜色加深的鸡蛋比例显著增多。     

不同饲粮粗蛋白质水平下黑水虻蛋白替代豆粕对蛋鸡生产性能、蛋清品质及血清蛋白质代谢指标的影响

本试验旨在探讨不同饲粮粗蛋白质水平下黑水虻蛋白替代豆粕对蛋鸡生产性能、蛋清品质及血清蛋白质代谢指标的影响。采用单因素随机试验设计,选用252只产蛋率相近的33周龄罗曼白蛋鸡,随机分为3组,每组7个重复,每重复12只鸡。各组分别饲喂标准回肠可消化氨基酸(SIDAA)平衡模式下配制的不同粗蛋白质水平(16.50%、14.85%、13.20%)的玉米-豆粕-黑水虻蛋白饲粮,各组黑水虻蛋白与豆粕提供等量的粗蛋白质。预试期2周,正试期12周。结果表明:1)与16.50%组相比,14.85组%和13.20%组的产蛋率和平均日采食量无显著影响(P>0.05),平均蛋重显著降低(P<0.05),料蛋比显著升高(P<0.05);13.20%组的产蛋量显著降低(P<0.05),14.85%组的产蛋量无显著差异(P>0.05)。2)与16.50%组相比,14.85%组的平均蛋重、蛋清重、浓蛋白重、蛋白高度、哈氏单位和蛋清比例均无显著差异(P>0.05);13.20%组的平均蛋重、浓蛋白重、蛋白高度显著降低(P<0.05),蛋清重和哈氏单位呈下降趋势(P=0.0513和P=0.0673)。3)各组血清谷草转氨酶、谷丙转氨酶活性及总蛋白、白蛋白、尿酸含量无显著差异(P>0.05)。16.50%和13.20%饲粮粗蛋白质水平对蛋鸡输卵管膨大部分泌功能有轻微不良影响。由此可见,在SIDAA模式下,以黑水虻蛋白替代豆粕并使饲粮粗蛋白质水平降低至14.85%时对鸡蛋蛋清品质无不良影响。     

Effect of energy and protein levels on performance,egg quality,and nutrient digestibility of laying pigeons

A total of 3,240 female Taisheng pigeons at 40 wk age were fed 9 diets containing 3 ME levels (2,630, 2,770, and 2,940 kcal/kg) and 3 CP levels (14.0, 15.0, and 16.0%) in a factorial arrangement. These diets were fed to investigate the effects of ME and CP on performance, egg quality, and nutrient digestibility. Female pigeons were housed under the same managerial conditions and randomly assigned into 9 treatments (6 replicates of 60 birds each). Two female–female paired pigeons housed in one cage were under a 16L:8D lighting cycle. Feed in pellet form and water were provided for ad libitum consumption. The study lasted 12 wk. As dietary ME level increased from 2,630 to 2,940 kcal/kg, BW, egg production, and apparent DM, crude fat (CF), and phosphorus (i.e., P) digestibilities increased (P < 0.05), feed intake decreased (P < 0.05), and feed conversion efficiency increased (P < 0.05). Increasing the level of dietary protein from 14 to 16% resulted in an increased (P < 0.05) BW, shell percentage, length of the major axis, and DM digestibility. Therefore, dietary ME had a greater influence on the performance of Taisheng laying pigeons than did dietary protein.     

Effect of storage duration on egg quality,embryo mortality and hatchability in FUNAAB-ɑ chickens

Effect of extended storage on egg quality, embryo mortality and hatchability in FUNAAB-ɑ chickens was determined. Hatchable eggs (n = 288; weighing 53.2 ± 4.67 g) collected from a flock of FUNAAB-ɑ layer breeder hens aged 32 weeks were stored in egg tray with broad end up under 16 ± 1.5°C for either 0, 4, 8, 12, 16 or 20 d. Before incubation, eight eggs from each group were evaluated for internal and external quality traits. Remaining eggs were set in an incubator and transferred into hatcher on embryonic day 18. Data collected were subjected to one-way analysis of variance. Egg weight loss (EWL; p < .001), surface area (p < .001), yolk diameter (p < .001), inner and outer blastoderm diameters (p < .05) and dead in germ (DIG; p < .001) increased with storage duration while yolk height (p < .001), yolk index (p < .001), albumen weight (p < .05), albumen height (p < .05), albumen index (p < .01), Haugh's unit (HU; p < .05), fertility (p < .001), hatchability of set (HATCHS; p < .001) and fertile eggs (p < .05) decreased. Weight losses of 0, 1.2, 2.2, 3.4, 4.6 and 6.1% were recorded in egg stored for 0, 4, 8, 12, 16 and 20 days respectively. Eggs stored beyond 8 days exhibited higher DIG and lower HATCHS. Shell percentage in 4 days storage (11.4%) was lower (p < .05) than in 16 days storage (13.4%). Shell thickness was similar in eggs stored for 0 to 12 days, but 8 days storage (0.60 mm) had thinner (p < .01) shell than day 16 (0.71 mm) and day 20 (0.73 mm) storage. Internal quality unit (IQU) was higher (p < .05) in fresh eggs (180.4) than in 12 days (167.8) and 20 days (167.8) stored eggs. Extended storage of FUNAAB-ɑ eggs caused EWL, surface area shrinkage, lowered HU and IQU, loss of yolk and albumen quality, increased blastoderm diameters and DIG, and decreased egg fertility and HATCHS from day 8 forward. Storing FUNAAB-ɑ eggs beyond 8 days reduced quality parameters; therefore, other mitigating factors are recommended when storing beyond 8 days.     

维生素E对蛋鸡产蛋后期产蛋性能和蛋品质的影响

文章旨在研究日粮中不同梯度维生素E添加水平对蛋鸡产蛋后期产蛋性能和蛋品质的影响。试验选择60周龄罗曼白壳商品蛋鸡300羽,试验随机分为5组,添加水平分别为0(对照组),30、60、120、240 mg/kg,每组6个重复,每个重复10羽鸡,预试期1周,正试期8周。结果表明:与对照组相比,蛋鸡产蛋后期日粮中添加120 mg/kg的维生素E可显著提高蛋鸡产蛋后期产蛋性能(P<0.05);与对照组相比,蛋鸡产蛋后期日粮中添加120 mg/kg的维生素E可显著提高蛋壳硬度、蛋壳相对重、蛋黄相对重以及蛋黄颜色(P<0.05),蛋黄总胆固醇含量极显著降低(P<0.01)。综上所述,在蛋鸡产蛋后期日粮中添加120 mg/kg的维生素E可显著改善其产蛋性能和蛋品质。