Turbulent mixing and mesoscale distributions of late-stage fish larvae on the NW Shelf of Western Australia

Light traps were deployed to describe vertical and cross‐shelf distributions of late‐stage larval fishes during five cruises in each of the 1997/98 and 1998/99 summers in the region of the Gulf of Exmouth on the southern North West Shelf of Western Australia. At each light trap station on a cross‐shelf transect we measured water temperature, salinity and chlorophyll a and used vertical plankton tows to estimate zooplankton biomass and copepod abundance. Current meters were deployed on moorings near the transect and the data used to model flows and mixing on the NW Shelf and in the Gulf. The majority of reef, pelagic and baitfish larvae (81, 83 and 66% respectively) were collected at only two stations that marked the boundary between stratified waters offshore and well‐mixed water within the Gulf. Most baitfishes (primarily Spratelloides spp.) were captured by traps deployed near the seabed, while reef fishes (mostly pomacentrids, lethrinids and siganids) and pelagic species (mostly scombrids and carangids) were captured in traps deployed near surface. Catch composition varied between summers with 64% of baitfishes collected in the first summer, while the majority of reef and pelagic fishes (81 and 80% respectively) were captured in the second summer. Modelling of circulation showed that the velocity of tidal currents was enhanced by constriction of flow between NW Cape and South Muiron Island and by shallowing of the shelf. Flood‐tide intrusions of water allowed the thermocline to move up the continental shelf, upwelling cool nutrient‐rich water that was then mixed throughout the entire water column at stations in the mouth of the Gulf. This upwelling and mixing resulted in higher chlorophyll a concentrations and copepod abundances either as a result of local in situ growth or advection/aggregation processes, and may account for the great abundances of late‐stage fish larvae in the mouth of the Gulf.     

Simulation and quantification of enrichment and retention processes in the southern Benguela upwelling ecosystem

Important environmental processes for the survival and recruitment of early life stages of pelagic fishes have been synthesized through Bakun's fundamental triad as enrichment, concentration and retention processes (A. Bakun, 1996, Patterns in the Ocean. Ocean Processes and Marine Population Dynamics. San Diego, CA, USA: University of California Sea Grant). This conceptual framework states that from favourable spawning habitats, eggs and larvae would be transported to and/or retained in places where food originating from enrichment areas would be concentrated. We propose a method for quantifying two of the triad processes, enrichment and retention, based on the Lagrangian tracking of particles transported within water velocity fields generated by a three‐dimensional hydrodynamic model. We apply this method to the southern Benguela upwelling ecosystem, constructing putative maps of enrichment and retention. We comment on these maps regarding main features of the circulation in the region, and investigate seasonal variability of the processes. We finally discuss the results in relation to available knowledge on the reproductive strategies of two pelagic clupeoid species abundant in the southern Benguela, anchovy (Engraulis encrasicolus) and sardine (Sardinops sagax). Our approach is intended to be sufficiently generic so as to allow its application to other upwelling systems.     

Microhabitat use by Iberian nase Chondrostoma polylepis and Iberian chub Squalius carolitertii in three small streams, north-west Portugal

Abstract –  Microhabitat use of Iberian nase Chondrostoma polylepis (Steindachner 1865) and Iberian chub Squalius carolitertii (Doadrio 1988) was studied in three small streams of the Lima basin, north-west Portugal. Measurements were made for 210 and 248 individuals, respectively, distributed in two size classes, based on fish ages, during winter, spring, summer and autumn 1998. Both species moved to shallow and slow-flowing microhabitats in summer and autumn, but this mainly reflected seasonal variation in microhabitat availability. Larger individuals of both species used deeper and lower percentage cover areas than smaller conspecifics, however significant ontogenetic differences were only found for water velocity. Different patterns of nonrandom microhabitat use were displayed by both cyprinids. Larger I. nase were in deeper and more discovered waters than those available in the habitat, whereas I. chub was over-represented in slow-flowing areas. There was no evidence of interspecific competition for microhabitat, therefore it is unlikely that spatial resource was limited during the present study.     

Assessing the role of the aquatic Natura 2000 network to protect both freshwater European species of community interest and threatened species in a Mediterranean region

1. The European Natura 2000 (N2K) network of protected areas stands out as the main conservation strategy in the European Union to preserve biodiversity under the auspices of the Convention on Biological Diversity.
2. The management of N2K sites is mainly focused on protecting the biological elements as Special Areas of Conservation for habitats or species listed in the European Habitats Directive, or as Special Protection Areas for birds listed in the European Birds Directive for which the site was designated. It seems urgent, therefore, to discriminate which N2K sites are really providing effective protection for aquatic biodiversity.
3. Although the main objective of N2K is to protect species listed in the Birds and Habitats Directives, the conservation status of threatened species included in the European Red List of the IUCN must also be a concern for the European Union.
4. Focusing on Central Spain as a case study, the aim of this work was to evaluate how far aquatic N2K (i.e. N2K sites designated for the occurrence of freshwater elements) is effective in protecting both those aquatic species in the Directives [referred to here as Species of Community Importance (SCI) and threatened species (TS)].
5. Most of the N2K sites in the study area have been designated using aquatic elements, which means that N2K could theoretically provide appropriate mechanisms to preserve aquatic biodiversity. However, N2K provides a low percentage of overlap with some of the hotspots identified for both TS and SCI. Surprisingly, TS are in general similarly or even better represented than SCI by N2K.
6. N2K may provide good coverage for aquatic biodiversity, mainly by acting as an umbrella for other species, but it could be improved by addressing some spatial gaps, thereby making it more relevant to current challenges such as climate change and other human impacts.

     

Spatial correlation patterns in coastal environmental variables and survival rates of salmon in the north-east Pacific Ocean

We examined spatial correlations for three coastal variables [upwelling index, sea surface temperature (SST), and sea surface salinity (SSS)] that might affect juvenile salmon ( Oncorhynchus spp.) during their early marine life. Observed correlation patterns in environmental variables were compared with those in survival rates of pink ( O. gorbuscha ), chum ( O. keta ), and sockeye ( O. nerka ) salmon stocks to help identify appropriate variables to include in models of salmon productivity. Both the upwelling index and coastal SST were characterized by strong positive correlations at short distances, which declined slowly with distance in the winter months, but much more rapidly in the summer. The SSS had much weaker and more variable correlations at all distances throughout the year. The distance at which stations were no longer correlated (spatial decorrelation scale) was largest for the upwelling index (> 1000 km), intermediate for SST (400–800 km in summer), and shortest for SSS (< 400 km). Survival rate indices of salmon showed moderate positive correlations among adjacent stocks that decreased to zero at larger distances. Spatial decorrelation scales ranged from approximately 500 km for sockeye salmon to approximately 1000 km for chum salmon. We conclude that variability in the coastal marine environment during summer, as well as variability in salmon survival rates, are dominated by regional scale variability of several hundred to 1000 km. The correlation scale for SST in the summer most closely matched the observed correlation scales for survival rates of salmon, suggesting that regional-scale variations in coastal SST can help explain the observed regional-scale covariation in survival rates among salmon stocks.     

Relative importance of gulf and shelf waters for spawning and recruitment of Australian anchovy, Engraulis australis, in South Australia

Gonosomatic indices and egg and larval densities observed from 1986 to 2001 suggest that the peak spawning season of the Australian anchovy (Engraulis australis) in South Australia occurs during January to March (summer and autumn). This coincides with the spawning season of sardine (Sardinops sagax) and the period when productivity in shelf waters is enhanced by upwelling. Anchovy eggs were abundant throughout gulf and shelf waters, but the highest densities occurred in the northern parts of Spencer Gulf and Gulf St Vincent where sea surface temperatures (SST) were 24–26°C. In contrast, larvae >10 mm total length (TL) were found mainly in shelf waters near upwelling zones where SSTs were relatively low (<20°C) and levels of chlorophyll a (chl a) relatively high. Larvae >15 mm TL were collected only from shelf waters near upwelling zones. The high levels of larval abundance in the upwelling zones may reflect higher levels of recruitment to later stages in these areas compared with the gulfs. The sardine spawns mainly in shelf waters; few eggs and no larvae were collected from the northern gulfs. The abundance of anchovy eggs and larvae in shelf waters increased when sardine abundance was reduced by large‐scale mortality events, and decreased as the sardine numbers subsequently recovered. We hypothesize that the upwelling zones provide optimal conditions for the survival of larval anchovy in South Australia, but that anchovy can only utilize these zones effectively when the sardine population is low. At other times, northern gulf waters of South Australia may provide a refuge for the anchovy that the sardine cannot utilize.     

镂空型人工鱼礁流场效应的数值模拟研究

应用CFD软件对中空结构梯形台鱼礁和方型鱼礁在非定常流作用下的三维流场进行了数值模拟,揭示了两类鱼礁形成的上升流、背涡流的规模和强度,分析了单体鱼礁和组合鱼礁的流场差异。数值模拟结果表明:梯形台鱼礁上升流区最大速度约为来流速度的0.58~0.67倍、上升流区平均速度约为来流速度的0.15~0.19倍、而上升流区的最大高度为礁体高度的2.12~2.49倍,背涡流区平均速度约为来流速度的0.35~0.36倍、背涡流区的最大宽度约为礁体宽度的1.40~1.61倍、组合鱼礁背涡流区的最大长度约为礁体高度的4.06~4.17倍;方型鱼礁上升流区最大速度约为来流速度的0.56~0.61倍、上升流区平均速度约为来流速度的0.15~0.17倍、而上升流区的最大高度为礁体高度的2.22~2.63倍,背涡流区平均速度约为来流速度的0.30~0.35倍、背涡流区的最大宽度约为礁体宽度的1.75~2.00倍、组合鱼礁背涡流区的最大长度约为礁体高度的3.90~4.06倍。从流场调控效果来看,在相同模拟工况下,选择方型鱼礁比梯形台鱼礁能够更好地发挥鱼礁的环境资源修复功能。     

Measuring inbreeding and inbreeding depression on pig growth from pedigree or SNP‐derived metrics

Multilocus homozygosity, measured as the proportion of the autosomal genome in homozygous genotypes or in runs of homozygosity, was compared with the respective pedigree inbreeding coefficients in 64 Iberian pigs genotyped using the Porcine SNP60 Beadchip. Pigs were sampled from a set of experimental animals with a large inbreeding variation born in a closed strain with a completely recorded multi‐generation genealogy. Individual inbreeding coefficients calculated from pedigree were strongly correlated with the different SNP‐derived metrics of homozygosity (r = 0.814–0.919). However, unequal correlations between molecular and pedigree inbreeding were observed at chromosomal level being mainly dependent on the number of SNPs and on the correlation between heterozygosities measured across different loci. A panel of 192 SNPs of intermediate frequencies was selected for genotyping 322 piglets to test inbreeding depression on postweaning growth performance (daily gain and weight at 90 days). The negative effects on these traits of homozygosities calculated from the genotypes of 168 quality‐checked SNPs were similar to those of inbreeding coefficients. The results support that few hundreds of SNPs may be useful for measuring inbreeding and inbreeding depression, when the population structure or the mating system causes a large variance of inbreeding.     

Differences in stability effects on the marine survival of hatchery pink salmon (Oncorhynchus gorbuscha) within the upwelling and downwelling domains of the northeast Pacific Ocean

Regional coastal conditions have a strong influence on juvenile salmon survival during their critical first months in the marine environment. Salmon (genus Oncorhynchus) survival has been thought to be favored within the high latitude downwelling domain if water column stabilities increase, whereas stability may have the opposite effect in upwelling‐dominated lower latitudes. In this study, the relationships between water column stabilities during early marine residence of pink salmon (Oncorhynchus gorbuscha) in both the upwelling and downwelling domains of the northeast Pacific Ocean and marine survival rates for hatchery stocks ranging from Vancouver Island, British Columbia, to Kodiak Island, Alaska, were explored. Contrary to expectation, there was no clear difference in the effect of stability on marine survival rates in the downwelling and upwelling domains. In both domains, marine survival rates increased for pink salmon stocks that experienced below‐average stability on the inner shelf during early marine residence. Stability effects from the outer shelf showed no consistent relationship to marine survival within the northeast Pacific.     

Vertical distribution and migration of fish larvae in the NW Iberian upwelling system during the winter mixing period: implications for cross‐shelf distribution

The vertical distribution and vertical migrations of fish larvae and implications for their cross‐shelf distribution were investigated in the northern limit of the NE Atlantic upwelling region during the late winter mixing period of 2012. The average positive values of the upwelling index for February and March of this year were far from normal, although the average hydrographic conditions during the period of study were of downwelling and the water column was completely mixed. Fish larvae, most in the preflexion stage, were concentrated in the upper layers of the water column and their distribution was depth stratified, both day and night. However, the larval fish community was not structured in the vertical plane and fish larvae did not show significant diel vertical migration (DVM), although five species showed ontogenetic vertical migration. In regions of coastal upwelling and in the absence of DVM, the location of fish larvae in the water column is crucial for their cross‐shelf distribution. Thus, the cross‐shelf distribution of the six most abundant species collected in this study can be explained by the surface onshore flow associated with coastal downwelling, retaining larvae of the coastal spawning species with a relatively shallow distribution in the shelf region and transporting larvae of slope spawning species onto the shelf. The wide vertical distribution shown by larvae of the offshore spawning species could be an adaptation of these species to ensure that some larvae reach the inshore nursery areas.