全球植物科学领域发展态势分析

基于农业科技创新的发展需求,为农业科技资源的有效配置提供支撑,从文献计量角度对全球植物科学领域研究现状及态势进行分析。利用定性、定量相结合的方法构建检索策略,基于Web of Science数据库及文献计量分析工具,对文献发表量、文献主要贡献国家、机构、期刊及发文量较高的作者H指数进行统计分析。结果表明,1995—2018年植物科学领域的文章发表量整体上呈现稳定增长趋势,学科呈现蓬勃发展的整体势头。美国和中国是文献主要贡献国家,文献量和总被引频次显著高于其他国家,但美国及欧洲国家的篇均被引数量高于中国。从全球来看,中国科研机构在发文数量占有绝对优势,而德国马克思普朗克的文章篇均被引数量高,达到10以上。对2016—2018年的高被引文献(Top10)进行内容分析,并通过高频词共现主题聚类可视化分析。从论文影响力及主题词规模2个维度表征领域内研究方向。结果表明,“植物应对生物及非生物胁迫”、“基因编辑技术”、“基因组学分析”、“植物生殖发育调控”是近年来植物科学的高关注度研究方向,主题内容与前期的需求调研相符,初步预测这些研究方向将对农业创新发展起到重要推动作用。     

The economic benefits and costs of trees in urban forest stewardship: A systematic review

Understanding the benefits provided by urban trees is important to justify investment and improve stewardship. Many studies have attempted to quantify the benefits of trees in monetary terms, though fewer have quantified the associated costs of planting and maintaining them. This systematic review examines the methods used to jointly analyse the costs and benefits of trees in the urban landscape, assesses the relative balance of benefits and costs, and attempts to understand the wide variation in economic values assigned in different studies. The benefits most frequently studied are those related to environmental regulation and property values, and the available data show that these usually outweigh the costs. Aesthetic, amenity, and shading benefits have also been shown to provide significant economic benefits, while benefits in terms of water regulation, carbon reduction and air quality are usually more modest. Variation in benefits and costs among studies is attributed largely to differences in the species composition and age structure of urban tree populations, though methodological differences also play a role. Comparison between studies is made difficult owing to differences in spatiotemporal scope, and in the way urban forest composition and demographic structure were reported. The overwhelming majority of studies concern deciduous trees in Northern America, and much less is known about urban forests in other regions, especially in the tropics. Future work should thus seek to fill these knowledge gaps, and standardise research protocols across cities. In light of ambitious goals in many cities to increase tree cover, ongoing advances in valuation methods need to provide a more comprehensive accounting of benefits and costs, and to better integrate economic assessment into the decision-making process.     

Phenological and physiological evaluation of first and second cropping periods of sorghum and maize crops

Environmental conditions influence phenology and physiological processes of plants. It is common for maize and sorghum to be sown at two different periods: the first cropping (spring/summer) and the second cropping (autumn/winter). The phenological cycle of these crops varies greatly according to the planting season, and it is necessary to characterize the growth and development to facilitate the selection of the species best adapted to the environment. The aim of this study was to characterize phenological phases and physiological parameters in sorghum and maize plants as a function of environmental conditions from the first cropping and second cropping periods. Two parallel experiments were conducted with both crops. The phenological characterization was based on growth analyses (plant height, leaf area and photoassimilate partitioning) and gas exchange evaluations (net assimilation rate, stomatal conductance, transpiration and water-use efficiency). It was found that the vegetative stage (VS) for sorghum and maize plants was 7 and 21 days, respectively, longer when cultivated during the second cropping. In the first cropping, the plants were taller than in the second cropping, regardless of the crop. The stomatal conductance of sorghum plants fluctuated in the second cropping during the development period, while maize plants showed decreasing linear behaviour. Water-use efficiency in sorghum plants was higher during the second cropping compared with the first cropping. In maize plants, in the second cropping, the water-use efficiency showed a slight variation in relation to the first cropping. It was concluded that the environmental conditions as degree-days, temperature, photoperiod and pluvial precipitation influence the phenology and physiology of both crops during the first and the second cropping periods, specifically cycle duration, plant height, leaf area, net assimilation rate, stomatal conductance and water-use efficiency, indicating that both crops respond differentially to environmental changes during the growing season.     

大花君子兰叶绿体基因组及其特征

采用Illumina MiSeq测序平台对大花君子兰（Clivia miniata）叶片总DNA进行测序，通过组装获得了其叶绿体基因组（cpDNA）全长序列（158 114 bp）。对其cpDNA注释得到135个基因，包含87个蛋白编码基因、40个tRNA基因和8个rRNA基因。采用生物信息学方法对获得的cpDNA进行简单序列重复（SSR）分析和密码子偏好性分析。结果显示：①大花君子兰cpDNA中共有61个SSR位点，其中单核苷酸、二核苷酸、三核苷酸、四核苷酸、五核苷酸和六核苷酸重复数分别为38、9、2、8、3和1个，多数SSR分布在基因间隔区；②大花君子兰cpDNA密码子偏爱以A或U（T）结尾，亮氨酸使用频率最高，半胱氨酸使用频率最低。基于24种植物的cpDNA全长和23种植物的叶绿体ycf2基因序列进行系统发育分析，结果显示大花君子兰与石蒜科植物在同一分支，显示最近的亲缘关系，支持大花君子兰属于石蒜科。基于叶绿体ycf2的系统发育分析结果与基于cpDNA全长的系统发育分析研究结果大部分相同，支持ycf2基因可以代替cpDNA全长用于植物系统发育分析。     

利用SOM聚类分析及主成分分析方法鉴定小麦品种萌发期耐盐性

为了研究不同小麦品种萌发期的耐盐性,为小麦萌发期耐盐性鉴定提供快速、准确的鉴定方法和理论依据。本研究以40个冬小麦品种为试验材料,通过主成分分析法(PCA)与神经网络自组织映射(SOM)聚类分析法,研究盐胁迫对40个小麦品种萌发期各项形态指标的影响。主成分分析法结果表明,发芽势、发芽率、最长根长、第一片叶长及胚芽鞘长在PCA下载荷量最大;根据SOM聚类分析结果,‘德抗961’等4个小麦品种属于高度耐盐品种,‘济麦22’等14个小麦品种属于耐盐性品种,‘济麦20’等16个品种属于中等耐盐性品种,‘鲁麦21’等6个小麦品种属于盐敏感性品种。发芽势、发芽率、最长根长、第一片叶长、胚芽鞘长能够作为萌发期小麦耐盐性筛选的主要评价指标,并且结合主成分、SOM聚类分析方法进行小麦萌发期耐盐性鉴定更为科学、方便。     

4种植物油热氧化同步荧光光谱分析

以亚麻籽油、大豆油、菜籽油与葵花籽油为原料,在不同温度条件下氧化并测定其不同时间的同步荧光光谱,分析同步荧光光谱及荧光物质变化情况。结果表明,4种植物油不同温度下的同步荧光光谱峰变化主要集中在300~415 nm内,且随着加热时间的延长存在波动现象;在50℃和150℃加热氧化条件下,300,330,375,415 nm这4个峰都存在明显的波动现象;二维相关分析表明,这4个峰的荧光强度变化速率不同,不同油变化差异较大;同种油在不同温度下,4个峰的波动情况、相互关系、变化速率均有明显差异。这些峰的变化与油脂氧化过程中荧光物质和油脂氧化程度的变化有关,可以利用同步荧光光谱的变化特性作为监控油脂氧化的依据。     

体外产气法评价全株藜麦与全株玉米混合青贮饲料饲用价值

为提高全株藜麦的饲料化利用率，寻找其与全株玉米的最佳青贮比，试验共设全株藜麦与全株玉米比为100：0，90：10，80：20等11个组合进行青贮发酵，发酵60 d后测定各组青贮料的体外产气发酵指标，使用灰色关联度分析筛选出最佳青贮比例。结果表明，体外发酵至36 h时，各处理组GP趋于稳定，体外发酵减弱接近停止；全株藜麦与全株玉米比例为90：10时，该青贮饲料组合的粗蛋白（CP）和粗脂肪（EE）含量显著高于其他各组（P<0.05），乙酸（AA）、总挥发性脂肪酸（TVFA）含量以及氨态氮（NH₃-N）浓度显著高于其他各处理（P<0.05）。分析表明，全株藜麦与全株玉米比例为90：10时，混合青贮饲料的营养品质和产气发酵特性综合表现最好，可作为优质混合青贮饲料在家畜养殖中推广使用。     

New Polyketides from the Antarctic Fungus Pseudogymnoascus sp. HSX2#-11

The species Pseudogymnoascus is known as a psychrophilic pathogenic fungus with a ubiquitous distribution in Antarctica. Meanwhile, the study of its secondary metabolites is infrequent. Systematic research of the metabolites of the fungus Pseudogymnoascus sp. HSX2#-11, guided by the method of molecular networking, led to the isolation of one novel polyketide, pseudophenone A (1), along with six known analogs (2–7). The structure of the new compound was elucidated by extensive spectroscopic investigation and single-crystal X-ray diffraction. Pseudophenone A (1) is a dimer of diphenyl ketone and diphenyl ether, and there is only one analog of 1 to the best of our knowledge. Compounds 1 and 2 exhibited antibacterial activities against a panel of strains. This is the first time to use molecular networking to study the metabolic profiles of Antarctica fungi.     

马疱疹病毒1型主要毒力基因分析及TK基因缺失载体的构建

为了解新疆马疱疹病毒1型（EHV-1）主要毒力基因遗传进化情况并构建TK基因缺失株，本研究以EHV-1 XJ2015株DNA为模板，对其主要毒力基因TK、gI和gE全长进行克隆、测序及生物信息学分析，并扩增TK基因左右重组臂TKL和TKR，构建质粒pUC-TKLR，将扩增后的增强绿色荧光蛋白（EGFP，含有CMV+polyA）插入pUC-TKLR质粒，构建TK基因缺失打靶质粒。TK、gI和gE基因同源性分析结果显示，XJ2015株与国外EHV-1分离株TK、gI和gE基因同源性均较高，分别为99.8%~100.0%、99.6%~100.0%和99.9%~100.0%；与EHV-3分离株同源性均最低，分别为72.9%、59.4%和62.1%；遗传进化分析显示，3个基因均与国外EHV-1同属于一个遗传进化分支，与EHV-9和EHV-4进化关系较近，但与EHV-3进化关系较远，表明XJ2015毒株与国外EHV-1毒株TK、gI、gE基因核苷酸上差异不明显，没有明显的地域性特征，功能基因保守且进化缓慢，同源基因功能相同或相近；经PCR扩增、酶切、测序及转染鉴定，本试验成功构建了用于TK基因缺失的打靶质粒pUC-TKLR-EGFP。通过对EHV-1主要毒力基因的分析及TK基因缺失打靶载体的构建，为新疆地区马鼻肺炎流行病学调查分析、TK基因缺失株的构建提供理论依据。