胡萝卜根中主要类胡萝卜素含量相关QTL的精细定位

以白色的野生胡萝卜‘松滋野生’(Ws)和橘色的栽培胡萝卜品种‘Amsterdam’(Af)为亲本构建的回交重组自交系(BIL)为试材,基于低倍重测序技术开发SNP标记,构建了由1 976个Bin标记组成,包含29 435个SNP标记的遗传图谱。图谱总距离834.28 c M,平均图距0.42 c M。通过对胡萝卜肉质根中类胡萝卜素含量相关QTL分析,在连锁群LG04和LG08中检测到调控α–胡萝卜素、β–胡萝卜素、ζ–胡萝卜素、叶黄素、玉米黄质和总类胡萝卜素含量的主效QTL(M-QTL)2、2、3、2、2和2个,表型贡献率为11.47%~19.18%;另检测到调控α–胡萝卜素、β–胡萝卜素、ζ–胡萝卜素、玉米黄质和总类胡萝卜素含量的上位性QTL(E-QTL)1、1、2、1和1个,表型贡献率为2.50%~3.66%。在M-QTL显著区间内共检索到36个有功能注释的预测基因,其中Dck018297为ζ–胡萝卜素脱氢酶2基因,与调控β–胡萝卜素合成和总类胡萝卜素含量有关;Dck008006为乙烯响应因子2.2的同源基因,与调控α–胡萝卜素、ζ–胡萝卜素合成有关;Dck029898为转录因子b HLH135的同源基因,与调控玉米黄质合成有关。     

基于特征金字塔注意力与深度卷积网络的多目标生猪检测

在生猪饲养环境中,猪只黏连、杂物遮挡等给生猪个体多目标检测带来很大困难。该研究以猪圈群养生猪为研究对象,以视频帧为数据源,提出一种适用于生猪形体检测的特征金字塔注意力(FeaturePyramidAttention,FPA)与Tiny-YOLO相结合的模型FPA-Tiny-YOLO。该模型将注意力信息融入到特征提取过程,在不大幅增加计算量的前提下即可提升特征提取能力、提高检测精度。对8栏日龄20～105 d的45头生猪视频截取图像进行图像处理,获得标注图片4 102张,构建了4种深度FPA模块分别加入YOLOV3与Tiny-YOLO模型中。试验表明,深度为3的FPA模块(即FPA-3)的Tiny-YOLO模型在测试集上对群养生猪多目标检测的召回率Recall、F1与平均检测精度m AP指标值最佳,分别达到86.09%、91.47%和85.85%,比未引入FPA模块的Tiny-YOLO模型均有不同程度的提高。选用不同的IOU(Intersection Over Union)和score阈值超参数值对模型预测结果均有不同程度影响;将测试集图像按照是否黏连与遮挡划分4种场景来探究该模型的鲁棒性。试验表明,加入FPA-3模块后Tiny-YOLO的Recall、F1与m AP比Tiny-YOLO分别提升6.73、4.34和7.33个百分点,说明特征金字塔注意力信息有利于精确、有效地对不同场景群养生猪进行多目标检测。研究结果可为后续开展生猪身份识别和行为分析移动端应用提供参考。     

Analysis on Genetic Diversity and Phyletic Evolution of mtDNA Cytb Gene in Zhongdian Yak

In order to investigate the genetic diversity and the origin of evolutionary relationship of Zhongdian yak,we analyzed the complete sequence of 15 individuals Cytb gene,its sequence polymorphism was analyzed,and the phylogenetic tree was constructed.The results showed that the length of the nucleotide sequence were 1 140 bp,with nucleotide frequencies of 26.3%,31.8%,13.1% and 28.8% for T,A,G and C,respectively.Three haplotypes were identified of 15 individuals,with 3 polymorphic sites,including two conversions,one transversion,haplotype diversity was 0.2571 and nucleotide diversity was 0.00035.Phylogenetic analysis suggested that Zhongdian yak and Bos mutusc clustered firstly,then gathered with Bison bison,which indicated that there were high genetic similarity and closer genetic relationship,genetic similarity with other cattle genus was relatively low.Combining with the proof of molecular biology and paleontology,the result supported the point that Bos grunniens and Bos mutus were classified as an alone genus in Bovinae.     

2017-2018年吉林部分地区规模化猪场猪细环病毒的遗传变异分析

为了解猪细环病毒（Torque teno sus virus, TTSuVs）在吉林部分规模化猪场的流行及其遗传变异情况。本研究对2017-2018年间，来自吉林地区10家规模化猪场的574份血清样本进行TTSuVs流行情况调查。并根据收地点，对20株TTSuVs进行ORF1全基因序列扩增及遗传变异性分析。结果显示：TTSuV1感染率为35.0%；TTSuV2感染率为63.2%；TTSuV1与TTSuV2混合感染率为30.3％；10株TTSuV1测序株之间的核苷酸同源性为75.7%-94.7%，氨基酸同源性为48.1%-88.2%；10株TTSuV2测序株之间的核苷酸同源性为77.5%-93.7%，氨基酸同源性为70.6%-87.4%；且吉林地区流行的TTSuV1均属于TTSuV1-lb型，而TTSuV2流行情况较为复杂，各种亚型均有涉及。     

Over 40% of 450 registered wheat cultivars (Triticum aestivum) worldwide are composed of multiple biotypes

Many of 450 common wheat cultivars bred and registered during the twentieth century in 12 countries were proved, due to seed-by-seed analysis, to be composed of two or more biotypes differing in their alleles at the gliadin (Gli) loci. These multiple biotypes may be regarded as authentic progeny of the respective parent lines, as evidenced by the gliadin composition of the respective parents. Therefore, the official claim for each cultivar to be uniform is commonly not maintained in practice. The most frequent was a non-uniform cultivar composed of two biotypes differing at one Gli locus, but there were cultivars represented by a large set of related genotypes differing at several Gli loci. The proportion of the multi-biotype cultivars was never less than 15% for a country collection, exceeding 50% in other countries. This proportion differed significantly between neighbouring countries. In Australia, all multi-biotype cultivars were found in eastern states; in the state of Victoria, their frequency was statistically higher than in the rest of the country. The proportion of multi-biotype cultivars among newly-released cultivars decreased with time in Australia and the UK. Thus, the non-uniformity of registered cultivars represents a general and important phenomenon of common wheat as a crop.     

Land surface temperature retrieval for arid regions based on Landsat-8 TIRS data:a case study in Shihezi,Northwest China

Scientific interest in geophysical information about land surface temperature （LST） is ever increasing, as such information provides a base for a large number of applications, including environmental and agricultural monitoring. Therefore, the research of LST retrieval has become a hot topic. Recent availability of Landsat-8 satel- lite imagery provides a new data source for LST retrieval. Hence, exploring an adaptive method with reliable ac- curacy seems to be essential. In this study, basing on features of Landsat-8 TIRS thermal infrared channels, we re-calculated parameters in the atmospheric transmittance empirical models of the existing split-window algorithm, and estimated the ground emissivity with the help of the land cover classification map of the study area. Further- more, a split-window algorithm was rebuilt by virtual of the estimation model of the updated atmospheric transmit- tance and the ground emissivity, and then a remote sensing retrieval for the LST of Shihezi city in Xinjiang Uygur autonomous region of Northwest China was conducted on the basis of this modified algorithm. Finally, precision validation of the new model was implemented by using the MODIS LST products. The results showed that the LST retrieval from Landsat-8 TIRS data based on our algorithm has a higher credibility, and the retrieved LST is more consistent with the MODIS LST products. This indicated that the modified algorithm is suitable for retrieving LST with competitive accuracy. With higher resolutions, Landsat-8 TIRS data may provide more accurate observation for LST retrieval.     

Genetic analysis and QTL mapping of growth period traits and plant height traits in soybean recombinant inbred lines from Dongnong 47 × PI 317334-B

High and stable yield is the main goal of soybean genetic improvement. In this study, association analysis was used to detect the quantitative trait loci (QTL) for the plant height, and soybean growth period using 182 SSR markers in the RIL population of 136 F_4:8 lines, which developed from a cross between photoperiod-insensitive cultivar ‘Dongnong 47’ and photoperiod-sensitive variety PI317334–B. The results showed that 33 QTLs related to soybean growth period and plant height traits were detected by compound interval mapping, and were located on 12 linkage groups including N, C1, C2, J, D1a, B2, E, G, A2, O, L, I, with the contribution rate of 7.85–33.84%. These QTL loci and linkage markers related to soybean photoperiod sensitivity, would be helpful to identify key genes that control soybean photoperiod sensitivity, and provide an important basis for the breeding of new photoperiod-insensitive soybean varieties based on molecular design breeding.