Simulating evolution of glyphosate resistance in Lolium rigidum II: past, present and future glyphosate use in Australian cropping

Glyphosate is a key component of weed control strategies in Australia and worldwide. Despite widespread and frequent use, evolved resistance to glyphosate is rare. A herbicide resistance model, parameterized for Lolium rigidum has been used to perform a number of simulations to compare predicted rates of evolution of glyphosate resistance under past, present and projected future use strategies. In a 30‐year wheat, lupin, wheat, oilseed rape crop rotation with minimum tillage (100% shallow depth soil disturbance at sowing) and annual use of glyphosate pre‐sowing, L. rigidum control was sustainable with no predicted glyphosate resistance. When the crop establishment system was changed to annual no‐tillage (15% soil disturbance at sowing), glyphosate resistance was predicted in 90% of populations, with resistance becoming apparent after between 10 and 18 years when sowing was delayed. Resistance was predicted in 20% of populations after 25–30 years with early sowing. Risks of glyphosate resistance could be reduced by rotating between no‐tillage and minimum‐tillage establishment systems, or by rotating between glyphosate and paraquat for pre‐sowing weed control. The double knockdown strategy (sequential full rate applications of glyphosate and paraquat) reduced risks of glyphosate and paraquat resistance to <2%. Introduction of glyphosate‐resistant oilseed rape significantly increased predicted risks of glyphosate resistance in no‐tillage systems even when the double knockdown was practised. These increased risks could be offset by high crop sowing rates and weed seed collection at harvest. When no selective herbicides were available in wheat crops, the introduction of glyphosate‐resistant oilseed rape necessitated a return to a minimum‐tillage crop establishment system.     

Assessing the sustainability of cropping systems in single- and multi-site studies. A review of methods

The multiple new challenges facing agriculture require the development of innovative cropping systems with high environmental, economic and social performances. Many research programmes are currently focusing on the design of such cropping systems. Some include the multicriteria assessment of cropping systems by diverse methods and approaches. Some of these research programmes are supported by experimental or farmers’ networks, generating new opportunities for data analysis and raising new research and methodological questions. In this article, we provide an overview based on a review of 56 articles, comparing the various methods for sustainability assessment in single- and multi-site studies. Articles were classified according to three characteristics: (i) their objectives, (ii) the study design (single- vs. multi-site), (iii) the type of system assessed (fictitious vs. real). Our analysis was structured around four items: (i) the variables used to describe cropping systems and production situations and the use of these variables in the assessment process, (ii) the criteria and associated indicators assessed, (iii) the methods used to explore multiple aspects of the performance of cropping systems, (iv) the use of reference values. We identified key points to be taken into account in multi-site studies. The application of the proposed guidelines to experimental networks should facilitate the identification of high-performance cropping systems and the identification of the drivers of cropping system performance.     

Identification of a phytoplasma associated with pomegranate little leaf disease in Iran

During 2012–2014 surveys for the presence of phytoplasma diseases in Fars province (Iran), pomegranate little leaf symptoms were observed in several orchards in Khafr and Neyriz areas. Samples collected from symptomatic plants positively reacted in nested PCR assays using P1/P7 followed by R16F2n/R16R2 primer pairs producing the expected 1,250 bp DNA fragments. Real and virtual RFLP analysis showed that the sequences of phytoplasma strains from Khafr and Neyriz (KPLL and NPLL strains, respectively) were identical to each other and belong to 16SrII phytoplasma group, subgroup D. Phylogenetic analysis of the R16F2n⁄R16R2 DNA region confirmed that KPLL and NPLL phytoplasmas were enclosed in the same clade as other 16SrII-D subgroup phytoplasmas. This is the first reported occurrence of a 16SrII phytoplasma infecting pomegranate trees.     

Simulating farming practices within a region using a stochastic bio-decisional model: Application to irrigated maize in south-western France

Agricultural is a major contributor to environmental resource management problems. Modelling the distribution of agricultural land use to evaluate current situations or scenarios is an important issue for policy-makers and natural resource managers. A promising approach is the use of bio-decisional models based on decision rules. However, at the regional scale, the large number of farmers makes it difficult to identify decision rules, and the diversity of farmers' decisions is rarely considered. To this end, we developed SIMITKO, a spatialised and stochastic bio-decisional model, able to simulate the spatial and temporal variability in farming practices. We focused on the choice of varietal earliness and sowing practices of maize (Zea mays L.) in the Baïse sector (south-western France). Model development was based on statistical analyses of surveys of farmers’ practices to identify their current strategies, the best variables to describe the practices and the probabilities associated with the values of the variables for each strategy. We tested SIMITKO by simulating the dynamics of areas sown with maize. Comparing model predictions of practices to observed data showed generally good predictions of sowing dynamics but less satisfactory predictions of varietal earliness choices. Possible improvements are suggested.     

Genotypic Variation for Tolerance to Transient Drought During the Reproductive Phase of Brassica rapa

Brassica rapa L. is a genetically diverse parent species of the allotetraploid species, oilseed rape (B. napus) and a potential source of drought tolerance for B. napus. We examined the effect of a 13‐day drought stress period during the early reproductive phase, relative to a well‐watered (WW) control, on subsequent growth and development in nine accessions of B. rapa and one accession of Brassica juncea selected for their wide morphological and genetic diversity. We measured leaf water potential, stomatal conductance, water use, and leaf and bud temperatures during the stress period and aboveground dry weight of total biomass at maturity. Dry weight of seeds and reproductive tissue were not useful measures of drought tolerance due to self‐incompatibility in B. rapa. The relative total biomass (used as the measure of drought tolerance in this study) of the 10 accessions exposed to drought stress ranged from 47 % to 117 % of the WW treatment and was negatively correlated with leaf‐to‐air and bud‐to‐air temperature difference when averaged across the 13‐day stress period. Two wild‐type (B. rapa ssp. sylvestris) accessions had higher relative total and non‐reproductive biomass at maturity and cooler leaves and buds than other types. We conclude that considerable genotypic variation for drought tolerance exists in B. rapa and cooler leaves and buds during a transient drought stress in the early reproductive phase may be a useful screening tool for drought tolerance.     

Incorporating local ecological knowledge into urban riparian restoration in a mountainous region of Southwest China

Modern cities use straightened and concrete watercourses with simple greening for riparian zones, which has been criticised for insensitivity to natural system integrity and cultural identity. This increases the challenge to urban ecologists, landscape designers and managers to conceive innovative and effective design solutions that do not jeopardise hydraulic efficiency yet are culturally acceptable to local communities. This paper introduces the field of local ecological knowledge (LEK) as rich sources of inspiration and design solutions to meet this challenge. LEK refers to knowledge and practices of various local cultures about the relationship of living beings (including humans) with their environments. Wepropose a pragmatic framework that integrates LEK with modern landscape design. It includes steps: (1) investigate existing practices, skills andmeasures relating to LEK; (2) explore how and whereLEKcan inspire or integrate withdesign. Here we propose three aspects for integration in accordance with the nature of landscaping process: overall structure, component and maintenance.(3)evaluate and test the integration in terms of its acceptability by local communities. Taking the riparian revegetation project of Hanfeng Lake Urban Wetland Park (Chongqing Municipality) as an example, we illustrate the utility of this framework. 11 local common practices relating to LEK were identified. According to thethree aspects for integration, alternative design solutions were offered. The survey showed that LEK based designwas more highly valued than other conventional ways in terms of useracceptance. We conclude that LEK provides actionable ecologically sound and culturally desirablesolutions for urbanlandscape. We also recognise that LEK evolveswith changing environments and new harmonious and dynamic human-nature relationships arecontinually re-forming. The process of acquisition and application of LEK could encourage multidisciplinary and synthetic approaches to urban ecosystems. Such adaptability and interdisciplinary engagementare crucial totoday’schanging and complexurban environments.     

A comparative study of extraction methods reveals preferred solvents for cystine knot peptide isolation from Momordica cochinchinensis seeds

MCoTI-I and MCoTI-II (short for Momordica cochinchinensis Trypsin Inhibitor-I and -II, respectively) are attractive candidates for developing novel intracellular-targeting drugs because both are exceptionally stable and can internalize into cells. These seed-derived cystine knot peptides are examples of how natural product discovery efforts can lead to biomedical applications. However, discovery efforts are sometimes hampered by the limited availability of seed materials, highlighting the need for efficient extraction methods. In this study, we assessed five extraction methods using M. cochinchinensis seeds, a source of well-characterized cystine knot peptides. The most efficient extraction of nine known cystine knot peptides was achieved by a method based on acetonitrile/water/formic acid (25:24:1), followed by methods based on sodium acetate (20 mM, pH 5.0), ammonium bicarbonate (5 mM, pH 8.0), and boiling water. On average, the yields obtained by these four methods were more than 250-fold higher than that obtained using dichloromethane/methanol (1:1) extraction, a previously applied standard method. Extraction using acetonitrile/water/formic acid (25:24:1) yielded the highest number of reconstructed masses within the majority of plant-derived cystine knot peptide mass range but only accounted for around 50% of the total number of masses, indicating that any single method may result in under-sampling. Applying acetonitrile/water/formic acid (25:24:1), boiling water, and ammonium bicarbonate (5 mM, pH 8.0) extractions either successively or discretely significantly increased the sampling number. Overall, acetonitrile/water/formic acid (25:24:1) can facilitate efficient extraction of cystine-knot peptides from M. cochinchinensis seeds but for discovery purposes the use of a combination of extraction methods is recommended where practical.     

Identification and validation of root length QTLs for water stress resistance in hexaploid wheat (<Emphasis Type="Italic">Titicum aestivum</Emphasis> L.)

Thorough understanding of the genetic mechanisms governing drought adaptive traits can facilitate drought resistance improvement. This study was conducted to identify chromosome regions harbouring QTLs contributing for water stress resistance in wheat. A RIL mapping population derived from a cross between W7984 (Synthetic) and Opata 85 was phenotyped for root length and root dry weight under water stress and non-stress growing conditions. ANOVA showed highly significant (p ≤ 0.01) variation among the RILs for both traits. Root length and root dry weight showed positive and significant (p ≤ 0.01) phenotypic correlation. Broad sense heritability was 86% for root length under stress and 65% for root dry weight under non-stress conditions. A total of eight root length and five root dry weight QTLs were identified under both water conditions. Root length QTLs Qrln.uwa.1BL, Qrln.uwa.2DS, Qrln.uwa.5AL and Qrln.uwa.6AL combined explained 43% of phenotypic variation under non-stress condition. Opata was the source of favourable alleles for root length QTLs under non-stress condition except for Qrln.uwa.6AL. Four stress specific root length QTLs, Qrls.uwa.1AS, Qrls.uwa.3AL, Qrls.uwa.7BL.1 and Qrls.uwa.7BL.2 jointly explained 47% of phenotypic variation. Synthetic wheat contributed favourable alleles for Qrls.uwa.1AS and Qrls.uwa.3AL. Two stable root dry weight QTLs on chromosomes 4AL and 5AL were consistently found in both water conditions. Three validation populations were developed by crossing cultivars Lang, Yitpi, and Chara with Synthetic W7984 to transfer two of the QTLs identified under stress condition. The F_2.3 and F_3.4 validation lines were phenotyped under the same level of water stress as RILs to examine the effect of these QTLs. There were 13.5 and 14.5% increases in average root length due to the inheritance of Qrls.uwa.1AS and Qrls.uwa.3AL, respectively. The result indicated that closely linked SSR markers Xbarc148 (Qrls.uwa.1AS) and Xgwm391 (Qrls.uwa.3AL) can be incorporated into MAS for water stress improvement in wheat.     

Soil fauna across Central European sandstone ravines with temperature inversion: From cool and shady to dry and hot places

Sandstone massifs with their deep ravines or gorges offer the instructive opportunity to study the response of organisms to steep environmental gradients. In 2008–2010, many groups of soil fauna were studied along transects across three ravines in the Bohemian Switzerland National Park (north-western Czech Republic), a part of the Elbe Sandstone Massif. Each transect included five sampling positions: two opposite edges, two opposite mid-slope positions, and the ravine bottom. The ravines had a specific microclimate characterized by temperature inversion. In general, the cooler and more humid ravine bottoms had also less acid soil with lower carbon content but enriched by litter of deciduous trees and herbs. The other transect positions were characterized by spruce (mid-slopes) and pine (edges) stands with mor humus, exposed to drought in the upper parts. The soil animal communities (identified to species level) differed substantially in dependence on their position along the transects. Ravine bottoms hosted a diverse soil fauna, including a rich macrofauna. The thick duff layer of acid soils on the slopes and edges hosted a poorer fauna but supported high densities of important decomposers such as enchytraeids, oribatid mites and microbivorous nematodes. In general, these were higher on the slopes, presumably due to the drought exposure of the edges. Vertical position in the ravine and soil pH were the most important factors explaining community composition. This confirmed that the area's high geomorphological diversity, leading to steep microclimatic gradients and heterogenous soil conditions, is a major cause of its high biodiversity. A shift in community structure in the lower parts of the ravines, observed after the first half of the study period, was possibly caused by summer flash floods. An increased frequency and severity of dry spells and flash floods due to heavy rains, predicted by relevant climate warming scenarios, will probably have an detrimental effect on the ravines'soil fauna.     

Drought Stress in Grain Legumes during Reproduction and Grain Filling

Water scarcity is a major constraint limiting grain legume production particularly in the arid and semi‐arid tropics. Different climate models have predicted changes in rainfall distribution and frequent drought spells for the future. Although drought impedes the productivity of grain legumes at all growth stages, its occurrence during reproductive and grain development stages (terminal drought) is more critical and usually results in significant loss in grain yield. However, the extent of yield loss depends on the duration and intensity of the stress. A reduction in the rate of net photosynthesis, and poor grain set and grain development are the principal reasons for terminal drought‐induced loss in grain yield. Insight into the impact and resistance mechanism of terminal drought is required for effective crop improvement programmes aiming to improve resistance to terminal drought in grain legumes. In this article, the impact of terminal drought on leaf development and senescence, light harvesting and carbon fixation, and grain development and grain composition is discussed. The mechanisms of resistance, management options, and innovative breeding and functional genomics strategies to improve resistance to terminal drought in grain legumes are also discussed.