Fauna activity on soils developing on dead logs in an ancient inland temperate rainforest of North British Columbia (Canada)

Journal of Soils and Sediments - The aim of the study was to compare the feeding activity of soil fauna in forest floor soil and in soil layer developing on dead cedar logs in temperate ancient...     

Influence of the fungal hyperparasite Trichoderma harzianum on the growth of Epichloë typhina,an agent of choke disease in grasses

Journal of Plant Diseases and Protection - In its sexual stage, the fungus Epichloë typhina (Ascomycetes: Clavicipitaceae) is a pathogen that causes choke disease in many grass species. It...     

Impact of Cameraria ohridella on Aesculus hippocastanum growth and long-term effects of trunk injection with pesticides

Defoliation caused annually by Cameraria ohridella has a considerable impact on the general condition of horse chestnut trees. We investigated the consequences of tree endotherapy against this insect. Wood samples, leaves and insect specimens were collected ten years after the treatment (injection) with pesticides. Insect invasion was manifested in all investigated trees by distinct radial growth depression. Treatment resulted in a growth upturn, while non-treated trees maintained decreased growth. The overall foliage infestation level was lower in treated trees, but pupal mass and potential fecundity of insect females were not affected. Our study revealed a long-lasting, positive effect of endotherapy on trees’ appearance and growth.     

Phylogenetic,genetic, and phenotypic diversity of Pseudomonas syringae pv. syringae strains isolated from citrus blast and black pit in Tunisia

Citrus blast and black pit caused by Pseudomonas syringae pv. syringae (Pss) is the only bacterial disease reported in Tunisian Citrus orchards. The phylogenetic relationship between Pss strains was studied based on multilocus sequence analysis (MLSA), using partial sequences of housekeeping genes rpoD, rpoB, gyrB, cts, and pfk for 14 representative Pss Citrus strains, including the reference strain LMG5496. The MLSA revealed that the studied Tunisian Citrus strains are closely related to LMG5496 and cluster in phylogroup 02. Based on the cts gene, the majority of Citrus strains clustered in clades “a” and “b”. However, five strains were placed in a newly defined clade “g”. We describe the presence of six different type III secreted effectors (T3SEs). These were found with frequencies of 100% for the effector hopAN1 and the helper hrpK1, 65% for hopT1-2, and 14% for hopN1, hopR1, and hopQ1-2. Investigation of copper resistance showed that 67% of our Pss Citrus strains from Tunisia are resistant to copper sulphate in vitro, and the copper resistance genes copABCDR were detected in 23% of the strains. Our results present new data concerning the genetic diversity and phylogeny, presence of T3SEs, and copper resistance within the Pss populations that affect Citrus in Tunisia.     

Genetic variability of Polish tomato black ring virus isolates and their satellite RNAs

Tomato black ring virus (TBRV), a member of the Nepovirus genus, is a serious plant pathogen distributed worldwide. It causes significant damage to several economically important crops, such as artichoke or strawberry. The TBRV bipartite genome consists of two polyadenylated single-stranded positive-sense RNA molecules, which may be accompanied by subviral particles such as defective interfering RNAs (DI RNAs) and satellite RNAs (satRNAs). In this study, we obtained the complete genome sequence of six TBRV isolates originating from different hosts and determined the presence of eight TBRV satRNAs. Subsequently, genetic variability, recombination, phylogenetic and selection pressure analyses were performed. The results revealed that the TBRV population is genetically diverse. The occurrence of potential recombination events, evidence of positive selection pressure acting on particular codons and the diversification of satRNAs within the TBRV population indicated that the virus mutates and can rapidly adapt to new environmental conditions or hosts. The presented data shed some light on TBRV evolutionary dynamics and epidemiology.     

Effect of nanosilver(nAg) on disinfection,growth, and chemical composition of young barley leaves under in vitro conditions

Cereals, including barley, have been playing a key role in human diet for a long time. The objective of the present study was to determine the effect of nanosilver(nAg) on limitation of infections, morphological features, and their chemical composition of young barley seedlings under in vitro condition. Addition of 0, 2, 4, 6 and 8 mg dm~(–3) nAg into MS medium was used.Obtained results showed that the effect on the morphological features depended on the nAg concentration. The addition of 6 and 8 mg dm~(–3) nAg into MS medium limited the number of infected barley embryos in vitro, whereas 4 and 8 mg dm~(–3) nAg resulted in the highest seedlings with the longest roots. nAg in the medium affected the colour of leaves and increased the contents of chlorophyll and β-carotene, in particular in seedlings growing in MS medium supplied with 6 mg dm~(–3) nAg.The addition of 8 mg dm~(–3) had the greatest effect on the contents of vitamin C and E in young barley seedlings. It was found that the contents of K and Ca in the young barley leaves were lower, as compared to control plants. The presence of 6 mg dm~(–3) nAg in the medium resulted in an increased contents of N, Mg, Zn, Cu, and P. Hence, a diversified effect of nAg on individual groups of polyphenolic compounds was noticed. The presence of 2 and 8 mg dm~(–3) nAg caused higher content values of polyphenolic compounds in young barley leaves.     

Micro-hydrological and micro-meteorological controls on survival and population growth of the whorl snail Vertigo geyeri Lindholm, 1925 in groundwater fed wetlands

Vertigo geyeri is a rare, tiny species of mollusc, living in calcareous, spring fed wetlands. It is considered to be threatened within the EU community; therefore it is protected under Annex II of the EU Habitat Directive (92/43/EEC). This snail has very specific micro-habitat requirements, which up to now were largely unknown. This study was initiated to provide more information on the detailed micro-hydrogeological and micro-meteorological requirements for this microscopic species in order to manage their future existence on Pollardstown Fen, Ireland and at other sites. The micro-habitat of the snail was studied during an extensive research project carried on Pollardstown Fen in Ireland during the period 2002-2005 being the first national (and possibly international) study of that scale. The results show that high relative humidity (above 80%) and close proximity to a phreatic water surface (approximately 0.1 m below ground surface) are the most important factors for maintaining populations of the snail.     

Effects of agri-environment management for stone curlews on other biodiversity

Two-hectare unsown, tilled fallow plots put in place under agri-environment schemes for stone curlews Burhinus oedicnemus in England were surveyed for other bird species, brown hares Lepus europaeus, carabid beetles, vascular plants, butterflies and bumblebees. The results were compared with those from surveys within the crop in the same field and in neighbouring fields. This was done to test whether agri-environment management targeted at a single species also provided benefits to wider biodiversity. All groups except carabid beetles were more abundant, more likely to be recorded, or more species rich on plots than within the crop. Carabid beetle activity–density and species richness did not differ between the plot and the crop; activity–density of one functional group (predators) was lower on plots than in the crop. Six rare arable plant species were recorded, predominantly from plots, and the plots are considered to perform comparably to other agri-environment options available in England designed specifically for arable plants. One red-listed bird species of conservation concern (skylark Alauda arvensis) was more abundant on plots than in the crop, and three other red-listed species (linnet Carduelis cannabina, yellowhammer Emberiza citrinella, corn bunting E. calandra) were more likely to be recorded on plots than in the crop. A fifth (lapwing Vanellus vanellus) was almost exclusively recorded from plots, and was more likely to be recorded on plots categorised as in good condition for stone curlews. These results demonstrate that fallow plots that have been put in place for the recovery of stone curlews have considerable value for a range of other farmland biodiversity, although management for stone curlews may be detrimental to some taxa, such as carabid beetles, that are sensitive to the relatively frequent spring tillage that these plots receive.     

Depolymerization degree of water-extractable arabinoxylans in rye bread: characteristics of inbred lines used for breeding of bread cultivars

The water-extractable arabinoxylans (WE AXs) present in rye bread govern its viscous properties, which may be related to reduced risk of cardiovascular diseases and diabetes. Breads made from rye cultivars generally exhibit higher AX-dependent extract viscosities (Cyran, M. R.; Saulnier, L. Food Chemistry2012, 131, 667-676) when compared with those produced from inbred lines used for their breeding. To give further details about this trend, the WE AXs were isolated from breads of lines and structurally characterized by HPSEC and (1)H NMR spectroscopy. The extract viscosities of endosperm and whole-meal breads were usually comparable, in contrast to those made from rye cultivars with higher viscosity of endosperm bread. The WE AXs present in breads obtained from inbred lines were characterized by the higher degradation degrees than those in breads from cultivars, as indicated by their HPSEC-RI profiles. This was associated with considerably lower proportions of 2-Xylp in their backbones. Besides, a level of endoxylanase activity in flours from inbred lines was much higher than that in flours from cultivars. Breeding of hybrid rye cultivars for production of high-viscosity bread requires the proper components. They may be preliminarily selected from populations with high WE AX contents and relatively low levels of endoxylanase activity by using the overall viscosity test for starting flours. However, further measurement of AX-dependent extract viscosity in test breads made from such lines may verify their usefulness completely.     

Biological Removal of Azo and Triphenylmethane Dyes and Toxicity of Process By-Products

Increasing environmental pollution is connected with broad applications of dyes and imperfection of dyeing technology. Decolourization of triphenylmethane brilliant green and disazo Evans blue by bacterial and fungal strains and toxicity (phyto- and zootoxicity) of degradation by-products were investigated. Influence of incubation method on dyes removal was evaluated (static, semi-static, shaken). Dead biomass was used for sorption estimation. Toxicity of treated dyes was measured to estimate possible influence on aquatic ecosystems. The zootoxicity test was done with Daphnia magna and phytotoxicity with Lemna minor. Samples were classified according to ACE 89/BE 2/D3 Final Report Commission EC. The best results of removal for all tested strains were reached in shaken samples. In opposite to fungi, bacterial strains decolourized brilliant green more effectively than Evans blue. The most effective bacterial strain was Erwinia spp. (s12) and fungal strains were Polyporus picipes (RWP17) and Pleurotus ostreatus (BWPH and MB). Decolourization of brilliant green was connected with decrease of zootoxicity (D. magna) and phytotoxicity (L. minor). Removal of Evans blue was connected with no changes in zootoxicity and decrease of phytotoxicity in most of samples.